Literature DB >> 21754599

Chloridotetra-pyridine-copper(II) dicyanamidate pyridine disolvate.

Susanne Wöhlert, Mario Wriedt, Inke Jess, Christian Näther.   

Abstract

In the crystal structure of the title compound, [CuCl(C(5)H(5)N)(4)][N(CN)(2)]·2C(6)H(5)N, the copper(II) cations are coordinated by one chloride anion and four N-bonded pyridine ligands into discrete complexes. The copper(II) cation shows a square-pyramidal coordination environment, with the chloride anion in the apical position. However, there is one additional chloride anion at 3.0065 (9) Å, leading to a disorted octa-hedral coordination mode for copper. The copper(II) cation, the chloride ligand and the central N atom of the dicyanamide anion are located on twofold rotation axes. Two pyridine solvent molecules are observed in general positions.

Entities:  

Year:  2011        PMID: 21754599      PMCID: PMC3120354          DOI: 10.1107/S1600536811016187

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to this work, see: Wriedt et al. (2009a ▶,b ▶). For structures of transition metal dicyanamides, see: Wriedt & Näther (2011 ▶) and for a related structure, see: Potočňák et al. (2006) ▶. For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

[CuCl(C5H5N)4](C2N3)·2C6H5N M = 639.64 Orthorhombic, a = 15.2859 (6) Å b = 17.6577 (9) Å c = 11.4818 (9) Å V = 3099.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.83 mm−1 T = 170 K 0.48 × 0.18 × 0.08 mm

Data collection

Stoe IPDS-1 diffractometer Absorption correction: numerical (X-SHAPE; Stoe & Cie, 1998) ▶ T min = 0.825, T max = 0.941 16623 measured reflections 3708 independent reflections 3220 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.093 S = 1.03 3708 reflections 198 parameters 1 restraint H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.56 e Å−3 Absolute structure: Flack (1983 ▶), 1771 Friedel pairs Flack parameter: 0.00 (2) Data collection: IPDS (Stoe & Cie, 1998) ▶; cell refinement: IPDS ▶; data reduction: IPDS ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CIFTAB in SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811016187/im2272sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016187/im2272Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CuCl(C5H5N)4](C2N3)·2C6H5NF(000) = 1324
Mr = 639.64Dx = 1.371 Mg m3
Orthorhombic, Iba2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: I 2 -2cCell parameters from 16623 reflections
a = 15.2859 (6) Åθ = 2.7–28°
b = 17.6577 (9) ŵ = 0.83 mm1
c = 11.4818 (9) ÅT = 170 K
V = 3099.1 (3) Å3Block, blue
Z = 40.48 × 0.18 × 0.08 mm
Stoe IPDS-1 diffractometer3708 independent reflections
Radiation source: fine-focus sealed tube3220 reflections with I > 2σ(I)
graphiteRint = 0.046
φ scansθmax = 28.0°, θmin = 2.7°
Absorption correction: numerical (X-SHAPE; Stoe & Cie, 1998)h = −20→20
Tmin = 0.825, Tmax = 0.941k = −23→23
16623 measured reflectionsl = −15→15
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.034w = 1/[σ2(Fo2) + (0.0648P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.093(Δ/σ)max = 0.001
S = 1.03Δρmax = 0.71 e Å3
3708 reflectionsΔρmin = −0.56 e Å3
198 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0056 (6)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1740 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.00 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.50000.78178 (3)0.01901 (12)
Cl10.50000.50001.01993 (7)0.01916 (17)
N10.51436 (10)0.38455 (9)0.77683 (18)0.0175 (3)
C20.49213 (17)0.26597 (16)0.6798 (2)0.0291 (6)
H20.46640.23830.61770.035*
C30.54374 (17)0.22991 (13)0.7620 (2)0.0310 (5)
H30.55380.17690.75700.037*
C40.58055 (16)0.27172 (12)0.8518 (2)0.0288 (5)
H40.61600.24790.90910.035*
C50.56461 (14)0.34873 (12)0.8560 (2)0.0222 (4)
H50.59000.37750.91720.027*
N110.63287 (11)0.50796 (9)0.77505 (18)0.0169 (3)
C110.67644 (14)0.54903 (11)0.8549 (2)0.0193 (4)
H110.64400.57680.91120.023*
C120.76675 (16)0.55225 (14)0.8580 (2)0.0257 (5)
H120.79600.58240.91440.031*
C130.81395 (14)0.51051 (14)0.7770 (3)0.0294 (5)
H130.87610.51140.77770.035*
C140.76982 (15)0.46773 (14)0.6956 (2)0.0264 (5)
H140.80100.43860.63970.032*
C150.67906 (14)0.46793 (13)0.6968 (2)0.0210 (4)
H150.64850.43880.64040.025*
C10.47896 (16)0.34335 (13)0.6904 (2)0.0225 (4)
H10.44350.36830.63420.027*
N210.79940 (15)0.79986 (11)0.5241 (2)0.0355 (5)
C210.7555 (2)0.75937 (16)0.6032 (2)0.0369 (6)
H210.72490.78590.66250.044*
C220.7521 (2)0.68134 (18)0.6039 (3)0.0413 (7)
H220.71930.65520.66150.050*
C230.79745 (19)0.64167 (15)0.5190 (3)0.0444 (7)
H230.79700.58790.51780.053*
C240.8428 (2)0.68182 (16)0.4368 (3)0.0401 (7)
H240.87410.65660.37670.048*
C250.8419 (2)0.75980 (16)0.4435 (3)0.0378 (6)
H250.87400.78700.38640.045*
N300.93807 (17)0.38709 (14)0.5329 (4)0.0628 (8)
C300.96901 (19)0.44145 (16)0.5161 (4)0.0527 (9)
N311.00000.50000.4511 (5)0.0835 (19)
U11U22U33U12U13U23
Cu10.01452 (16)0.01243 (16)0.0301 (2)−0.00084 (13)0.0000.000
Cl10.0229 (3)0.0194 (3)0.0151 (4)0.0001 (3)0.0000.000
N10.0189 (8)0.0146 (7)0.0188 (7)−0.0016 (6)0.0009 (7)0.0003 (7)
C20.0405 (16)0.0208 (12)0.0259 (13)−0.0078 (10)0.0045 (9)−0.0045 (7)
C30.0379 (13)0.0177 (10)0.0375 (15)0.0035 (10)0.0098 (10)0.0000 (8)
C40.0334 (12)0.0230 (11)0.0299 (11)0.0106 (10)0.0009 (10)0.0057 (9)
C50.0251 (11)0.0206 (9)0.0210 (9)0.0034 (9)−0.0008 (8)0.0023 (8)
N110.0163 (6)0.0175 (8)0.0169 (8)−0.0007 (6)−0.0013 (7)−0.0001 (6)
C110.0228 (10)0.0172 (9)0.0179 (9)−0.0039 (8)0.0000 (8)−0.0005 (8)
C120.0233 (11)0.0296 (11)0.0241 (10)−0.0074 (9)−0.0035 (9)0.0011 (9)
C130.0178 (8)0.0386 (13)0.0317 (11)−0.0009 (9)0.0028 (11)0.0067 (10)
C140.0220 (12)0.0289 (12)0.0282 (11)0.0027 (10)0.0037 (9)0.0021 (10)
C150.0214 (11)0.0214 (10)0.0201 (9)0.0007 (9)0.0021 (9)−0.0017 (8)
C10.0274 (11)0.0200 (10)0.0202 (8)−0.0050 (9)−0.0013 (9)−0.0002 (9)
N210.0417 (12)0.0274 (9)0.0375 (10)0.0003 (9)0.0084 (11)0.0080 (9)
C210.0384 (15)0.0408 (16)0.0314 (12)0.0044 (13)0.0074 (9)0.0092 (10)
C220.0395 (15)0.0433 (16)0.0412 (15)−0.0056 (13)0.0035 (11)0.0181 (12)
C230.0511 (16)0.0258 (11)0.0562 (17)−0.0071 (12)−0.0008 (14)0.0103 (12)
C240.0467 (19)0.0304 (13)0.0431 (14)−0.0018 (13)0.0081 (11)0.0023 (11)
C250.0447 (17)0.0327 (13)0.0362 (12)−0.0063 (12)0.0129 (11)0.0090 (11)
N300.0391 (13)0.0320 (12)0.117 (2)0.0062 (11)−0.0058 (16)0.0096 (19)
C300.0252 (11)0.0321 (15)0.101 (3)−0.0010 (12)0.0075 (16)−0.0040 (16)
N310.105 (5)0.091 (4)0.054 (3)−0.054 (3)0.0000.000
Cu1—N112.0374 (16)C13—C141.378 (4)
Cu1—N11i2.0374 (16)C13—H130.9500
Cu1—N12.0511 (16)C14—C151.387 (3)
Cu1—N1i2.0511 (16)C14—H140.9500
Cu1—Cl12.7344 (9)C15—H150.9500
N1—C11.345 (3)C1—H10.9500
N1—C51.348 (3)N21—C251.333 (4)
C2—C31.385 (4)N21—C211.337 (3)
C2—C11.386 (4)C21—C221.379 (4)
C2—H20.9500C21—H210.9500
C3—C41.387 (3)C22—C231.386 (5)
C3—H30.9500C22—H220.9500
C4—C51.382 (3)C23—C241.368 (4)
C4—H40.9500C23—H230.9500
C5—H50.9500C24—C251.379 (4)
N11—C151.344 (3)C24—H240.9500
N11—C111.346 (3)C25—H250.9500
C11—C121.382 (3)N30—C301.087 (4)
C11—H110.9500C30—N311.360 (4)
C12—C131.389 (4)N31—C30ii1.360 (4)
C12—H120.9500
N11—Cu1—N11i175.66 (12)C11—C12—H12120.7
N11—Cu1—N187.76 (6)C13—C12—H12120.7
N11i—Cu1—N192.12 (6)C14—C13—C12119.39 (19)
N11—Cu1—N1i92.12 (6)C14—C13—H13120.3
N11i—Cu1—N1i87.76 (6)C12—C13—H13120.3
N1—Cu1—N1i176.83 (12)C13—C14—C15118.8 (2)
N11—Cu1—Cl192.17 (6)C13—C14—H14120.6
N11i—Cu1—Cl192.17 (6)C15—C14—H14120.6
N1—Cu1—Cl191.59 (6)N11—C15—C14122.2 (2)
N1i—Cu1—Cl191.59 (6)N11—C15—H15118.9
C1—N1—C5118.27 (18)C14—C15—H15118.9
C1—N1—Cu1121.01 (15)N1—C1—C2122.6 (2)
C5—N1—Cu1120.58 (15)N1—C1—H1118.7
C3—C2—C1118.4 (2)C2—C1—H1118.7
C3—C2—H2120.8C25—N21—C21115.6 (2)
C1—C2—H2120.8N21—C21—C22123.9 (3)
C2—C3—C4119.5 (2)N21—C21—H21118.1
C2—C3—H3120.2C22—C21—H21118.1
C4—C3—H3120.2C21—C22—C23118.8 (2)
C5—C4—C3118.6 (2)C21—C22—H22120.6
C5—C4—H4120.7C23—C22—H22120.6
C3—C4—H4120.7C24—C23—C22118.4 (2)
N1—C5—C4122.5 (2)C24—C23—H23120.8
N1—C5—H5118.7C22—C23—H23120.8
C4—C5—H5118.7C23—C24—C25118.3 (3)
C15—N11—C11118.64 (17)C23—C24—H24120.9
C15—N11—Cu1120.85 (14)C25—C24—H24120.9
C11—N11—Cu1120.31 (15)N21—C25—C24125.0 (2)
N11—C11—C12122.3 (2)N21—C25—H25117.5
N11—C11—H11118.9C24—C25—H25117.5
C12—C11—H11118.9N30—C30—N31156.9 (5)
C11—C12—C13118.7 (2)C30ii—N31—C30113.5 (5)
  5 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Thermal decomposition reactions as tool for the synthesis of new metal thiocyanate diazine coordination polymers with cooperative magnetic phenomena.

Authors:  Mario Wriedt; Sina Sellmer; Christian Näther
Journal:  Inorg Chem       Date:  2009-07-20       Impact factor: 5.165

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Directed synthesis of μ-1,3,5 bridged dicyanamides by thermal decomposition of μ-1,5 bridged precursor compounds.

Authors:  Mario Wriedt; Christian Näther
Journal:  Dalton Trans       Date:  2010-12-14       Impact factor: 4.390

5.  Coordination polymer changing its magnetic properties and colour by thermal decomposition: synthesis, structure and properties of new thiocyanato iron(II) coordination polymers based on 4,4'-bipyridine as ligand.

Authors:  Mario Wriedt; Sina Sellmer; Christian Näther
Journal:  Dalton Trans       Date:  2009-08-12       Impact factor: 4.390

  5 in total

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