Literature DB >> 21754591

Aqua-(2,2'-diamino-4,4'-bi-1,3-thia-zole-κN,N)(pyridine-2,6-dicarboxyl-ato-κO,N,O)zinc tetra-hydrate.

Yan-Li Wang1, Guang-Jun Chang, Bing-Xin Liu.   

Abstract

The title compound, [Zn(C(7)H(3)NO(4))(C(6)H(6)N(4)S(2))(H(2)O)]·4H(2)O, assumes a distorted octa-hedral coordination geometry around the Zn(2+) cation, formed by a diamino-bithia-zole (DABT) mol-ecule, a pyridine-2,6-dicarboxyl-ate anion and a water mol-ecule. The pyridine-2,6-dicarboxyl-ate anion chelates to the Zn(II) atom with a facial configuration. Within the chelating DABT ligand, the two thia-zole rings are twisted by a dihedral angle of 14.52 (8)° with respect to each other. O-H⋯O and N-H⋯O hydrogen bonds occur in the crystal structure.

Entities:  

Year:  2011        PMID: 21754591      PMCID: PMC3120585          DOI: 10.1107/S1600536811015145

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For potential applications of transition metal complexes of 2,2′-diamino-4,4′-bi-1,3-thia­zole (DABT), see: Sun et al. (1997 ▶). For general background to metal complexes with DABT, see: Liu et al. (2003 ▶). For related structures, see: Liu & Xu (2004 ▶, 2005 ▶); Liu et al. (2005 ▶).

Experimental

Crystal data

[Zn(C7H3NO4)(C6H6N4S2)(H2O)]·4H2O M = 518.82 Monoclinic, a = 10.0529 (19) Å b = 7.0833 (13) Å c = 27.720 (6) Å β = 93.960 (3)° V = 1969.2 (7) Å3 Z = 4 Mo Kα radiation μ = 1.52 mm−1 T = 295 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.701, T max = 0.796 9851 measured reflections 3471 independent reflections 2238 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.119 S = 1.03 3471 reflections 281 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.60 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015145/ff2006sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015145/ff2006Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H3NO4)(C6H6N4S2)(H2O)]·4H2OF(000) = 1064
Mr = 518.82Dx = 1.750 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3380 reflections
a = 10.0529 (19) Åθ = 2.0–25.0°
b = 7.0833 (13) ŵ = 1.52 mm1
c = 27.720 (6) ÅT = 295 K
β = 93.960 (3)°Prism, yellow
V = 1969.2 (7) Å30.25 × 0.20 × 0.15 mm
Z = 4
Bruker SMART APEX diffractometer3471 independent reflections
Radiation source: fine-focus sealed tube2238 reflections with I > 2σ(I)
graphiteRint = 0.074
Detector resolution: 10.0 pixels mm-1θmax = 25.0°, θmin = 2.4°
ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −8→8
Tmin = 0.701, Tmax = 0.796l = −22→32
9851 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0374P)2 + 1.648P] where P = (Fo2 + 2Fc2)/3
3471 reflections(Δ/σ)max < 0.001
281 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.60 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn0.79367 (6)0.53096 (9)0.32687 (2)0.0278 (2)
O10.6001 (3)0.3881 (5)0.33361 (13)0.0323 (9)
H1A0.62060.26020.34430.031 (15)*
H1B0.54560.44650.35670.06 (2)*
O210.6938 (3)0.8166 (5)0.32814 (13)0.0322 (9)
O220.6230 (4)1.0365 (5)0.37777 (13)0.0352 (9)
O230.8776 (4)0.2804 (5)0.36725 (13)0.0330 (9)
O240.9366 (4)0.1804 (6)0.44238 (14)0.0460 (11)
N110.7611 (4)0.5270 (6)0.25153 (14)0.0249 (10)
N120.5302 (4)0.4822 (7)0.23428 (16)0.0401 (13)
H12A0.51900.44320.26730.048*
H12B0.47890.44570.21160.048*
N130.9917 (4)0.5795 (6)0.30709 (15)0.0270 (11)
N141.1350 (4)0.5784 (7)0.37784 (17)0.0434 (13)
H14A1.07730.60540.39910.052*
H14B1.21890.59430.38570.052*
N210.7907 (4)0.6039 (6)0.39887 (15)0.0238 (10)
S110.68935 (14)0.5508 (2)0.16108 (5)0.0368 (4)
S121.23955 (13)0.5564 (2)0.29119 (5)0.0348 (4)
C110.8759 (5)0.5611 (7)0.22697 (18)0.0250 (12)
C120.8558 (5)0.5786 (8)0.1793 (2)0.0333 (14)
H120.92250.60260.15850.040*
C130.6547 (5)0.5153 (7)0.22092 (18)0.0265 (12)
C141.0006 (5)0.5681 (7)0.25667 (19)0.0255 (12)
C151.1253 (5)0.5557 (8)0.2422 (2)0.0323 (13)
H151.14670.54780.21020.039*
C161.1095 (5)0.5723 (8)0.3291 (2)0.0306 (13)
C210.7370 (5)0.7687 (7)0.41205 (18)0.0243 (12)
C220.7300 (6)0.8163 (8)0.45964 (19)0.0348 (14)
H220.69380.93130.46820.042*
C230.7783 (6)0.6894 (8)0.4950 (2)0.0364 (14)
H230.77550.71930.52760.044*
C240.8303 (5)0.5195 (7)0.4814 (2)0.0324 (14)
H240.86140.43240.50460.039*
C250.8355 (5)0.4801 (7)0.43272 (19)0.0270 (12)
C260.6810 (5)0.8848 (8)0.3697 (2)0.0287 (13)
C270.8889 (5)0.2973 (7)0.4127 (2)0.0298 (13)
O1W0.4314 (4)0.5366 (7)0.40173 (16)0.0453 (11)
H1WA0.44540.66140.40850.06 (2)*
H1WB0.45380.47850.42560.08 (3)*
O2W0.5018 (4)1.2043 (6)0.45001 (16)0.0533 (12)
H2WA0.55631.17780.43030.06 (2)*
H2WB0.54131.18460.47820.05 (2)*
O3W0.9102 (4)0.1298 (5)0.54438 (17)0.0485 (12)
H3WA0.92290.13800.51110.11 (3)*
H3WB0.97300.03900.55800.051 (18)*
O4W0.6334 (4)0.1492 (6)0.54252 (14)0.0465 (11)
H4WA0.60740.03510.55390.14 (4)*
H4WB0.71920.13380.53880.05 (2)*
U11U22U33U12U13U23
Zn0.0276 (4)0.0333 (4)0.0226 (4)0.0023 (3)0.0028 (3)0.0000 (3)
O10.034 (2)0.032 (2)0.031 (2)0.0021 (18)0.0031 (18)0.0038 (18)
O210.034 (2)0.040 (2)0.022 (2)0.0082 (18)−0.0013 (17)0.0010 (18)
O220.045 (2)0.024 (2)0.037 (2)0.0128 (19)0.0054 (19)0.0033 (18)
O230.037 (2)0.028 (2)0.035 (2)0.0057 (17)0.0031 (19)−0.0012 (18)
O240.065 (3)0.033 (2)0.040 (3)0.022 (2)0.004 (2)0.005 (2)
N110.025 (2)0.027 (3)0.022 (2)0.001 (2)0.0027 (19)0.003 (2)
N120.030 (3)0.065 (4)0.024 (3)0.000 (3)−0.003 (2)0.001 (2)
N130.022 (2)0.031 (3)0.028 (3)−0.0009 (19)0.003 (2)0.000 (2)
N140.023 (3)0.073 (4)0.035 (3)−0.003 (2)0.004 (2)−0.002 (3)
N210.021 (2)0.026 (3)0.024 (3)0.0024 (19)0.0020 (19)0.000 (2)
S110.0403 (9)0.0476 (10)0.0221 (8)0.0015 (7)−0.0013 (6)0.0025 (7)
S120.0238 (7)0.0401 (9)0.0412 (9)0.0012 (6)0.0064 (7)0.0010 (7)
C110.026 (3)0.025 (3)0.024 (3)0.000 (2)0.002 (2)−0.005 (2)
C120.036 (3)0.038 (4)0.027 (3)−0.002 (3)0.008 (3)0.002 (3)
C130.028 (3)0.029 (3)0.023 (3)0.006 (2)0.002 (2)−0.007 (2)
C140.031 (3)0.021 (3)0.025 (3)0.003 (2)0.004 (2)−0.002 (2)
C150.036 (3)0.035 (3)0.027 (3)0.000 (3)0.011 (3)0.003 (3)
C160.030 (3)0.033 (3)0.030 (3)−0.001 (3)0.004 (3)0.001 (3)
C210.027 (3)0.024 (3)0.022 (3)0.000 (2)0.002 (2)−0.001 (2)
C220.044 (4)0.031 (3)0.029 (3)0.013 (3)0.004 (3)−0.003 (3)
C230.046 (4)0.043 (4)0.020 (3)0.006 (3)0.007 (3)−0.001 (3)
C240.044 (3)0.026 (3)0.027 (3)0.011 (3)0.003 (3)0.006 (3)
C250.027 (3)0.025 (3)0.029 (3)0.000 (2)0.004 (2)0.006 (3)
C260.027 (3)0.027 (3)0.032 (4)−0.006 (3)0.003 (3)−0.003 (3)
C270.034 (3)0.019 (3)0.038 (4)0.001 (2)0.006 (3)0.002 (3)
O1W0.045 (3)0.046 (3)0.044 (3)0.007 (2)0.001 (2)−0.001 (2)
O2W0.059 (3)0.067 (3)0.035 (3)0.023 (2)0.010 (3)0.010 (2)
O3W0.054 (3)0.040 (3)0.052 (3)0.021 (2)0.008 (2)0.006 (2)
O4W0.050 (3)0.050 (3)0.040 (3)0.004 (2)0.006 (2)−0.002 (2)
Zn—N212.064 (4)S11—C131.737 (5)
Zn—N112.092 (4)S12—C151.717 (6)
Zn—N132.129 (4)S12—C161.736 (5)
Zn—O12.213 (3)C11—C121.328 (7)
Zn—O232.232 (4)C11—C141.452 (7)
Zn—O212.260 (4)C12—H120.9300
O1—H1A0.9713C14—C151.346 (7)
O1—H1B0.9633C15—H150.9300
O21—C261.264 (6)C21—C221.368 (7)
O22—C261.250 (6)C21—C261.510 (7)
O23—C271.264 (6)C22—C231.393 (7)
O24—C271.239 (6)C22—H220.9300
N11—C131.321 (6)C23—C241.375 (7)
N11—C111.401 (6)C23—H230.9300
N12—C131.351 (6)C24—C251.382 (7)
N12—H12A0.9708C24—H240.9300
N12—H12B0.8256C25—C271.521 (7)
N13—C161.294 (7)O1W—H1WA0.9122
N13—C141.409 (6)O1W—H1WB0.7978
N14—C161.359 (7)O2W—H2WA0.8216
N14—H14A0.8749O2W—H2WB0.8624
N14—H14B0.8645O3W—H3WA0.9418
N21—C251.339 (6)O3W—H3WB0.9604
N21—C211.347 (6)O4W—H4WA0.9116
S11—C121.725 (6)O4W—H4WB0.8825
N21—Zn—N11163.19 (16)C11—C12—S11111.1 (4)
N21—Zn—N13106.55 (16)C11—C12—H12124.5
N11—Zn—N1380.18 (16)S11—C12—H12124.5
N21—Zn—O187.78 (14)N11—C13—N12124.0 (5)
N11—Zn—O190.03 (15)N11—C13—S11113.4 (4)
N13—Zn—O1159.90 (15)N12—C13—S11122.5 (4)
N21—Zn—O2375.18 (15)C15—C14—N13115.0 (5)
N11—Zn—O23121.17 (15)C15—C14—C11127.9 (5)
N13—Zn—O2385.97 (15)N13—C14—C11117.0 (4)
O1—Zn—O2384.17 (13)C14—C15—S12110.5 (4)
N21—Zn—O2174.03 (14)C14—C15—H15124.7
N11—Zn—O2189.34 (14)S12—C15—H15124.7
N13—Zn—O21106.47 (15)N13—C16—N14124.8 (5)
O1—Zn—O2190.79 (14)N13—C16—S12114.8 (4)
O23—Zn—O21148.96 (13)N14—C16—S12120.4 (4)
Zn—O1—H1A106.4N21—C21—C22121.6 (5)
Zn—O1—H1B113.8N21—C21—C26113.3 (4)
H1A—O1—H1B108.5C22—C21—C26125.0 (5)
C26—O21—Zn115.4 (3)C21—C22—C23118.7 (5)
C27—O23—Zn115.5 (3)C21—C22—H22120.6
C13—N11—C11110.9 (4)C23—C22—H22120.6
C13—N11—Zn134.9 (3)C24—C23—C22119.5 (5)
C11—N11—Zn113.9 (3)C24—C23—H23120.3
C13—N12—H12A118.5C22—C23—H23120.3
C13—N12—H12B112.8C23—C24—C25119.1 (5)
H12A—N12—H12B121.5C23—C24—H24120.5
C16—N13—C14110.3 (4)C25—C24—H24120.5
C16—N13—Zn135.5 (4)N21—C25—C24121.2 (5)
C14—N13—Zn111.7 (3)N21—C25—C27114.3 (5)
C16—N14—H14A126.0C24—C25—C27124.5 (5)
C16—N14—H14B111.6O22—C26—O21124.7 (5)
H14A—N14—H14B118.9O22—C26—C21118.9 (5)
C25—N21—C21119.9 (4)O21—C26—C21116.4 (5)
C25—N21—Zn119.2 (3)O24—C27—O23127.1 (5)
C21—N21—Zn120.8 (3)O24—C27—C25117.2 (5)
C12—S11—C1389.5 (3)O23—C27—C25115.7 (5)
C15—S12—C1689.3 (3)H1WA—O1W—H1WB107.4
C12—C11—N11115.2 (5)H2WA—O2W—H2WB106.1
C12—C11—C14128.9 (5)H3WA—O3W—H3WB107.3
N11—C11—C14116.0 (4)H4WA—O4W—H4WB103.6
D—H···AD—HH···AD···AD—H···A
O1—H1A···O22i0.971.842.778 (5)163
O1—H1B···O1W0.961.872.827 (6)174
O1W—H1WA···O4Wii0.912.102.812 (6)134
O1W—H1WB···O2Wi0.802.102.775 (6)142
O2W—H2WA···O220.821.932.692 (6)155
O2W—H2WB···O4Wiii0.861.972.830 (6)178
O3W—H3WA···O240.941.942.880 (6)174
O3W—H3WB···O24iv0.961.802.694 (6)153
O4W—H4WA···O2Wii0.912.022.863 (6)153
O4W—H4WB···O3W0.881.922.783 (6)167
N12—H12A···O10.972.002.873 (6)149
N12—H12B···O21v0.832.192.984 (5)161
N14—H14A···O3Wvi0.882.443.043 (6)126
N14—H14B···O1Wvii0.862.193.022 (6)162
Table 1

Selected bond lengths (Å)

Zn—N212.064 (4)
Zn—N112.092 (4)
Zn—N132.129 (4)
Zn—O12.213 (3)
Zn—O232.232 (4)
Zn—O212.260 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O22i0.971.842.778 (5)163
O1—H1B⋯O1W0.961.872.827 (6)174
O1W—H1WA⋯O4Wii0.912.102.812 (6)134
O1W—H1WB⋯O2Wi0.802.102.775 (6)142
O2W—H2WA⋯O220.821.932.692 (6)155
O2W—H2WB⋯O4Wiii0.861.972.830 (6)178
O3W—H3WA⋯O240.941.942.880 (6)174
O3W—H3WB⋯O24iv0.961.802.694 (6)153
O4W—H4WA⋯O2Wii0.912.022.863 (6)153
O4W—H4WB⋯O3W0.881.922.783 (6)167
N12—H12A⋯O10.972.002.873 (6)149
N12—H12B⋯O21v0.832.192.984 (5)161
N14—H14A⋯O3Wvi0.882.443.043 (6)126
N14—H14B⋯O1Wvii0.862.193.022 (6)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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