Literature DB >> 21754590

Aqua-bis-(3,5-dimethyl-1H-pyrazole-κN)(oxydiacetato-κO,O',O'')copper(II) dihydrate.

Yan-Li Wang1, Guang-Jun Chang, Bing-Xin Liu.   

Abstract

In the title compound, [Cu(C(4)H(4)O(5))(C(5)n class="Species">H(8)N(2))(2)(H(2)O)]·2H(2)O, the Cu(II) cation assumes a distorted octa-hedral coordination geometry formed by two 3,5-dimethyl-1H-pyrazole ligands, one oxydiacetate (ODA) dianion and one coordinated water mol-ecule. The tridentate ODA ligand chelates to the Cu cation in a facial configuration with a longer Cu-O bond [2.597 (3) Å], and both chelating rings display envelope conformations. In the mol-ecule, the two pyrazole rings are twisted with respect to each other at a dihedral angle of 57.5 (3)°. Extensive inter-molecular O-H⋯O and N-H⋯O hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2011        PMID: 21754590      PMCID: PMC3120427          DOI: 10.1107/S1600536811015169

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyrazole compounds, see: Haanstra et al. (1990 ▶); Mukherjee (2000 ▶). For the structure of a related n class="Chemical">ODA complex, see: Wu et al. (2003 ▶).

Experimental

Crystal data

[Cu(C4H4O5)(C5n class="Species">H8N2)2(H2O)]·2H2O M = 441.93 Triclinic, a = 7.5502 (12) Å b = 10.6264 (17) Å c = 12.687 (2) Å α = 92.219 (2)° β = 104.880 (2)° γ = 93.769 (2)° V = 980.0 (3) Å3 Z = 2 Mo Kα radiation μ = 1.16 mm−1 T = 295 K 0.25 × 0.19 × 0.15 mm

Data collection

Bruker SMART 1000 diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.767, T max = 0.840 5085 measured reflections 3389 independent reflections 2663 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.133 S = 1.05 3389 reflections 244 parameters H-atom parameters constrained Δρmax = 0.97 e Å−3 Δρmin = −0.64 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015169/xu5195sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015169/xu5195Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C4H4O5)(C5H8N2)2(H2O)]·2H2OZ = 2
Mr = 441.93F(000) = 462
Triclinic, P1Dx = 1.498 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5502 (12) ÅCell parameters from 2650 reflections
b = 10.6264 (17) Åθ = 2.0–25.0°
c = 12.687 (2) ŵ = 1.16 mm1
α = 92.219 (2)°T = 295 K
β = 104.880 (2)°Prism, blue
γ = 93.769 (2)°0.25 × 0.19 × 0.15 mm
V = 980.0 (3) Å3
Bruker SMART 1000 diffractometer3389 independent reflections
Radiation source: fine-focus sealed tube2663 reflections with I > 2σ(I)
graphiteRint = 0.023
ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −8→8
Tmin = 0.767, Tmax = 0.840k = −10→12
5085 measured reflectionsl = −15→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0597P)2 + 1.5674P] where P = (Fo2 + 2Fc2)/3
3389 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.97 e Å3
0 restraintsΔρmin = −0.64 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu0.03356 (7)0.40147 (5)0.29056 (4)0.02518 (19)
O10.2664 (4)0.5043 (3)0.4150 (2)0.0366 (8)
H1A0.33780.56750.40960.055*
H1B0.27730.49520.48260.055*
O31−0.1202 (4)0.5234 (3)0.3466 (2)0.0273 (7)
O32−0.3929 (4)0.5595 (3)0.3709 (2)0.0426 (9)
O330.0910 (4)0.5157 (3)0.1841 (2)0.0346 (7)
O340.0182 (5)0.6530 (3)0.0567 (3)0.0453 (9)
O35−0.2706 (4)0.4198 (3)0.1414 (2)0.0373 (8)
N110.1915 (5)0.2768 (3)0.2429 (3)0.0283 (8)
N120.1713 (5)0.2466 (4)0.1347 (3)0.0334 (9)
H12A0.10380.27810.08880.040*
N21−0.0679 (5)0.2709 (3)0.3726 (3)0.0291 (8)
N22−0.0561 (5)0.2859 (3)0.4817 (3)0.0305 (9)
H22A−0.01390.34840.51050.037*
C110.2563 (7)0.1441 (4)0.1202 (4)0.0381 (12)
C120.3380 (7)0.1053 (5)0.2215 (4)0.0395 (12)
H120.40790.03620.23750.047*
C130.2950 (6)0.1905 (4)0.2959 (4)0.0324 (10)
C140.2536 (9)0.0916 (6)0.0080 (4)0.0608 (17)
H14A0.18220.1420−0.04590.091*
H14B0.19980.0062−0.00220.091*
H14C0.37700.09320.00050.091*
C150.3537 (8)0.1923 (5)0.4175 (4)0.0482 (14)
H15A0.30350.26160.44760.072*
H15B0.48540.20200.44170.072*
H15C0.30990.11440.44140.072*
C21−0.1237 (7)0.1816 (4)0.5189 (4)0.0326 (10)
C22−0.1789 (7)0.0966 (4)0.4317 (4)0.0379 (12)
H22−0.23070.01480.43210.046*
C23−0.1438 (6)0.1538 (4)0.3425 (4)0.0299 (10)
C24−0.1240 (9)0.1774 (6)0.6367 (4)0.0567 (16)
H24A−0.07280.25690.67430.085*
H24B−0.05140.11120.66920.085*
H24C−0.24780.16140.64220.085*
C25−0.1799 (7)0.1017 (5)0.2272 (4)0.0418 (12)
H25A−0.14020.16430.18380.063*
H25B−0.30910.07940.19840.063*
H25C−0.11350.02800.22530.063*
C31−0.2937 (6)0.5131 (4)0.3171 (3)0.0293 (10)
C32−0.3894 (6)0.4403 (5)0.2100 (4)0.0374 (11)
H32A−0.44060.35920.22570.045*
H32B−0.49040.48650.17120.045*
C33−0.2287 (7)0.5301 (5)0.0895 (4)0.0425 (13)
H33A−0.28900.59960.11340.051*
H33B−0.27890.51560.01120.051*
C34−0.0253 (7)0.5683 (4)0.1126 (3)0.0328 (11)
O1W0.3682 (9)0.7458 (7)0.0748 (6)0.147 (3)
H1WA0.27880.69400.07710.221*
H1WB0.38370.73890.01090.221*
O2W0.4093 (11)0.1824 (6)0.7222 (6)0.155 (3)
H2WA0.39740.24100.67780.232*
H2WB0.48680.21110.78360.232*
U11U22U33U12U13U23
Cu0.0271 (3)0.0284 (3)0.0217 (3)0.0038 (2)0.0086 (2)0.0027 (2)
O10.0293 (18)0.049 (2)0.0288 (16)−0.0038 (15)0.0052 (14)−0.0014 (15)
O310.0236 (17)0.0296 (16)0.0273 (15)0.0019 (13)0.0050 (13)−0.0020 (13)
O320.0310 (19)0.067 (2)0.0319 (17)0.0094 (17)0.0119 (15)−0.0013 (16)
O330.0377 (19)0.0389 (19)0.0288 (16)0.0048 (15)0.0104 (14)0.0091 (14)
O340.058 (2)0.045 (2)0.0338 (18)0.0047 (18)0.0123 (17)0.0152 (16)
O350.039 (2)0.044 (2)0.0291 (16)−0.0013 (16)0.0119 (14)−0.0023 (14)
N110.031 (2)0.033 (2)0.0234 (18)0.0047 (17)0.0108 (16)0.0030 (15)
N120.039 (2)0.038 (2)0.0264 (19)0.0089 (18)0.0127 (17)0.0060 (17)
N210.033 (2)0.034 (2)0.0227 (18)0.0052 (17)0.0113 (16)0.0016 (16)
N220.038 (2)0.028 (2)0.0274 (19)0.0005 (17)0.0130 (17)−0.0018 (15)
C110.043 (3)0.034 (3)0.041 (3)0.008 (2)0.019 (2)−0.002 (2)
C120.039 (3)0.037 (3)0.049 (3)0.012 (2)0.019 (2)0.006 (2)
C130.030 (3)0.036 (3)0.035 (2)0.007 (2)0.013 (2)0.007 (2)
C140.083 (5)0.059 (4)0.047 (3)0.018 (3)0.026 (3)−0.009 (3)
C150.051 (3)0.057 (3)0.038 (3)0.023 (3)0.008 (2)0.012 (2)
C210.037 (3)0.033 (3)0.033 (2)0.006 (2)0.015 (2)0.009 (2)
C220.048 (3)0.028 (3)0.040 (3)−0.004 (2)0.018 (2)0.003 (2)
C230.027 (2)0.029 (2)0.035 (2)0.0009 (19)0.0103 (19)−0.0027 (19)
C240.081 (5)0.057 (4)0.038 (3)−0.002 (3)0.026 (3)0.011 (3)
C250.043 (3)0.042 (3)0.038 (3)−0.005 (2)0.012 (2)−0.009 (2)
C310.028 (3)0.037 (3)0.023 (2)0.005 (2)0.0072 (19)0.0093 (19)
C320.028 (3)0.055 (3)0.029 (2)−0.003 (2)0.009 (2)−0.003 (2)
C330.041 (3)0.058 (3)0.031 (2)0.014 (3)0.009 (2)0.012 (2)
C340.044 (3)0.036 (3)0.020 (2)0.006 (2)0.011 (2)−0.002 (2)
O1W0.111 (5)0.152 (6)0.182 (7)−0.049 (5)0.062 (5)−0.026 (5)
O2W0.176 (8)0.094 (5)0.180 (7)−0.003 (5)0.022 (6)0.031 (5)
Cu—O331.960 (3)C14—H14B0.9600
Cu—N211.995 (4)C14—H14C0.9600
Cu—N112.015 (3)C15—H15A0.9600
Cu—O312.020 (3)C15—H15B0.9600
Cu—O12.228 (3)C15—H15C0.9600
O1—H1A0.8500C21—C221.360 (6)
O1—H1B0.8500C21—C241.498 (6)
O31—C311.263 (5)C22—C231.381 (6)
O32—C311.246 (5)C22—H220.9300
O33—C341.266 (5)C23—C251.495 (6)
O34—C341.245 (5)C24—H24A0.9600
O35—C321.421 (5)C24—H24B0.9600
O35—C331.424 (6)C24—H24C0.9600
N11—C131.332 (5)C25—H25A0.9600
N11—N121.364 (5)C25—H25B0.9600
N12—C111.329 (6)C25—H25C0.9600
N12—H12A0.7732C31—C321.519 (6)
N21—C231.334 (6)C32—H32A0.9700
N21—N221.366 (5)C32—H32B0.9700
N22—C211.342 (6)C33—C341.512 (7)
N22—H22A0.7550C33—H33A0.9700
C11—C121.367 (7)C33—H33B0.9700
C11—C141.503 (6)O1W—H1WA0.8499
C12—C131.395 (6)O1W—H1WB0.8500
C12—H120.9300O2W—H2WA0.8499
C13—C151.491 (6)O2W—H2WB0.8748
C14—H14A0.9600
O33—Cu—N21168.02 (14)H15A—C15—H15B109.5
O33—Cu—N1188.43 (13)C13—C15—H15C109.5
N21—Cu—N1191.13 (14)H15A—C15—H15C109.5
O33—Cu—O3194.10 (12)H15B—C15—H15C109.5
N21—Cu—O3186.76 (13)N22—C21—C22106.1 (4)
N11—Cu—O31176.92 (12)N22—C21—C24120.3 (4)
O33—Cu—O187.35 (12)C22—C21—C24133.6 (5)
N21—Cu—O1104.62 (13)C21—C22—C23107.5 (4)
N11—Cu—O194.36 (13)C21—C22—H22126.2
O31—Cu—O184.00 (12)C23—C22—H22126.2
Cu—O1—H1A130.6N21—C23—C22109.6 (4)
Cu—O1—H1B120.0N21—C23—C25121.4 (4)
H1A—O1—H1B107.7C22—C23—C25129.0 (4)
C31—O31—Cu122.4 (3)C21—C24—H24A109.5
C34—O33—Cu125.6 (3)C21—C24—H24B109.5
C32—O35—C33113.1 (4)H24A—C24—H24B109.5
C13—N11—N12105.3 (3)C21—C24—H24C109.5
C13—N11—Cu132.4 (3)H24A—C24—H24C109.5
N12—N11—Cu120.7 (3)H24B—C24—H24C109.5
C11—N12—N11111.5 (4)C23—C25—H25A109.5
C11—N12—H12A124.7C23—C25—H25B109.5
N11—N12—H12A122.8H25A—C25—H25B109.5
C23—N21—N22105.4 (3)C23—C25—H25C109.5
C23—N21—Cu131.4 (3)H25A—C25—H25C109.5
N22—N21—Cu123.0 (3)H25B—C25—H25C109.5
C21—N22—N21111.4 (4)O32—C31—O31123.9 (4)
C21—N22—H22A131.2O32—C31—C32117.4 (4)
N21—N22—H22A117.3O31—C31—C32118.8 (4)
N12—C11—C12107.3 (4)O35—C32—C31113.2 (4)
N12—C11—C14121.6 (4)O35—C32—H32A108.9
C12—C11—C14131.1 (5)C31—C32—H32A108.9
C11—C12—C13105.8 (4)O35—C32—H32B108.9
C11—C12—H12127.1C31—C32—H32B108.9
C13—C12—H12127.1H32A—C32—H32B107.7
N11—C13—C12110.1 (4)O35—C33—C34114.0 (4)
N11—C13—C15122.3 (4)O35—C33—H33A108.8
C12—C13—C15127.6 (4)C34—C33—H33A108.8
C11—C14—H14A109.5O35—C33—H33B108.8
C11—C14—H14B109.5C34—C33—H33B108.8
H14A—C14—H14B109.5H33A—C33—H33B107.7
C11—C14—H14C109.5O34—C34—O33123.1 (5)
H14A—C14—H14C109.5O34—C34—C33115.8 (4)
H14B—C14—H14C109.5O33—C34—C33121.1 (4)
C13—C15—H15A109.5H1WA—O1W—H1WB107.7
C13—C15—H15B109.5H2WA—O2W—H2WB108.2
D—H···AD—HH···AD···AD—H···A
O1—H1A···O32i0.852.212.798 (5)126
O1—H1B···O32ii0.851.972.764 (5)156
O1W—H1WA···O340.851.932.707 (8)151
O1W—H1WB···O35iii0.852.453.097 (8)133
O2W—H2WA···O32ii0.852.233.024 (8)156
O2W—H2WB···O1Wiv0.881.872.741 (10)171
N12—H12A···O34iii0.772.032.773 (5)163
N22—H22A···O31ii0.752.202.904 (5)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O32i0.852.212.798 (5)126
O1—H1B⋯O32ii0.851.972.764 (5)156
O1W—H1WA⋯O340.851.932.707 (8)151
O1W—H1WB⋯O35iii0.852.453.097 (8)133
O2W—H2WA⋯O32ii0.852.233.024 (8)156
O2W—H2WB⋯O1Wiv0.881.872.741 (10)171
N12—H12A⋯O34iii0.772.032.773 (5)163
N22—H22A⋯O31ii0.752.202.904 (5)155

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2,2'-Diamino-4,4'-bi-1,3-thiazole-kappa2N3,N3')(oxydiacetato-kappa3O,O',O")copper(II) monohydrate.

Authors:  Zhi Yong Wu; Duan Jun Xu; Yue Luo; Jing Yun Wu; Michael Y Chiang
Journal:  Acta Crystallogr C       Date:  2003-07-12       Impact factor: 1.172

  2 in total

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