Literature DB >> 21754550

2,4-Bis(4-fluoro-phen-yl)-2,3-dihydro-1H-1,5-benzodiazepine.

Zeliha Baktır, Mehmet Akkurt, S Samshuddin, B Narayana, H S Yathirajan.   

Abstract

In the title compound, C(21)H(16)F(2)N(2), the seven-membered 1,4-diazepine ring of the benzodiazepine ring system adopts a distorted-boat conformation. The benzene ring of this system makes dihedral angles of 18.6 (2) and 78.8 (2)° with those of two fluoro-phenyl substituents. In the crystal, inversion dimers linked by two weak C-H⋯F hydrogen bonds generate R(2) (2)(20) ring motifs. There are also weak N-H⋯π and C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21754550      PMCID: PMC3089231          DOI: 10.1107/S1600536811015455

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: An et al. (2007 ▶); Bibila Mayaya Bisseyou et al. (2010 ▶); Harrison et al. (2005 ▶); Peeters et al. (1997 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For graph-set nomenclature of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C21H16F2N2 M = 334.36 Monoclinic, a = 12.9151 (4) Å b = 6.0438 (3) Å c = 21.2851 (7) Å β = 92.147 (3)° V = 1660.27 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 294 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: refined from ΔF (XABS2; Parkin et al., 1995 ▶) T min = 0.981, T max = 0.981 3413 measured reflections 3413 independent reflections 1226 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.151 S = 1.04 3413 reflections 233 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811015455/hb5848sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015455/hb5848Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811015455/hb5848Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H16F2N2F(000) = 696
Mr = 334.36Dx = 1.338 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1691 reflections
a = 12.9151 (4) Åθ = 2.5–26.3°
b = 6.0438 (3) ŵ = 0.10 mm1
c = 21.2851 (7) ÅT = 294 K
β = 92.147 (3)°Block, pale yellow
V = 1660.27 (11) Å30.20 × 0.20 × 0.20 mm
Z = 4
Rigaku R-AXIS RAPID-S diffractometer3413 independent reflections
Radiation source: Sealed Tube1226 reflections with I > 2σ(I)
Graphite MonochromatorRint = 0.000
Detector resolution: 10.0000 pixels mm-1θmax = 26.5°, θmin = 3.2°
dtprofit.ref scansh = −16→16
Absorption correction: part of the refinement model (ΔF) [XABS2 (Parkin et al., 1995); Cubic fit to sinθ/λ, 24 parameters]k = 0→7
Tmin = 0.981, Tmax = 0.981l = 0→26
3413 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.P)2 + 1.2828P] where P = (Fo2 + 2Fc2)/3
3413 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.16 e Å3
2 restraintsΔρmin = −0.18 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.2985 (2)0.5093 (5)0.38988 (13)0.1156 (16)
F20.6025 (2)−0.0519 (5)0.58369 (17)0.1365 (18)
N1−0.0014 (3)0.2319 (7)0.60658 (19)0.0764 (17)
N20.1477 (3)−0.0519 (6)0.67436 (16)0.0667 (16)
C10.0446 (4)−0.0259 (7)0.6923 (2)0.0649 (17)
C20.0114 (4)−0.1609 (7)0.7400 (2)0.0747 (19)
C3−0.0881 (4)−0.1566 (8)0.7601 (2)0.084 (2)
C4−0.1587 (4)−0.0156 (9)0.7299 (2)0.090 (2)
C5−0.1280 (4)0.1161 (8)0.6815 (2)0.083 (2)
C6−0.0273 (4)0.1150 (7)0.6613 (2)0.0669 (17)
C70.0768 (4)0.4074 (7)0.6097 (2)0.0674 (17)
C80.1593 (3)0.3499 (7)0.66113 (19)0.0675 (17)
C90.2006 (3)0.1161 (7)0.6576 (2)0.0635 (17)
C100.3074 (3)0.0767 (7)0.6375 (2)0.0652 (17)
C110.3591 (4)0.2231 (8)0.6009 (2)0.080 (2)
C120.4584 (4)0.1818 (9)0.5813 (2)0.095 (3)
C130.5044 (4)−0.0120 (10)0.6017 (3)0.094 (3)
C140.4580 (4)−0.1612 (8)0.6392 (2)0.085 (2)
C150.3579 (4)−0.1181 (7)0.6567 (2)0.0735 (17)
C160.1258 (3)0.4366 (7)0.5464 (2)0.0628 (17)
C170.1274 (3)0.2722 (7)0.5013 (2)0.0710 (17)
C180.1843 (4)0.2974 (9)0.4478 (2)0.083 (2)
C190.2394 (4)0.4894 (10)0.4416 (2)0.081 (2)
C200.2382 (4)0.6561 (8)0.4837 (2)0.080 (2)
C210.1800 (3)0.6298 (7)0.5363 (2)0.0721 (17)
H1N−0.060 (2)0.265 (10)0.588 (2)0.1640*
H20.05840−0.258400.759200.0900*
H3−0.10780−0.245900.793100.1010*
H4−0.22690−0.010500.742500.1080*
H5−0.176300.209200.661700.1000*
H70.048 (4)0.552 (4)0.621 (2)0.1640*
H8A0.216700.452200.658100.0810*
H8B0.129600.371300.701900.0810*
H110.326500.354400.588700.0960*
H120.492300.280400.555600.1140*
H140.49250−0.288600.652700.1020*
H150.32380−0.219600.681400.0880*
H170.089800.142900.507000.0850*
H180.185000.187800.417100.0990*
H200.275700.785200.477600.0960*
H210.177100.744200.565400.0860*
U11U22U33U12U13U23
F10.117 (3)0.135 (3)0.098 (2)0.027 (2)0.0457 (19)0.034 (2)
F20.080 (2)0.133 (3)0.199 (4)0.019 (2)0.040 (2)0.037 (3)
N10.065 (3)0.093 (3)0.071 (3)−0.011 (2)0.002 (2)0.014 (2)
N20.063 (3)0.064 (2)0.073 (3)0.001 (2)0.003 (2)0.001 (2)
C10.065 (3)0.066 (3)0.064 (3)−0.005 (3)0.006 (2)0.001 (2)
C20.078 (4)0.070 (3)0.076 (3)0.000 (3)0.002 (3)0.003 (3)
C30.088 (4)0.088 (4)0.077 (4)0.001 (3)0.020 (3)0.014 (3)
C40.073 (4)0.109 (4)0.090 (4)0.005 (3)0.015 (3)0.011 (3)
C50.069 (3)0.098 (4)0.083 (4)0.009 (3)0.013 (3)0.012 (3)
C60.066 (3)0.072 (3)0.063 (3)0.001 (3)0.008 (2)0.002 (2)
C70.069 (3)0.069 (3)0.064 (3)0.004 (3)0.000 (2)0.004 (3)
C80.072 (3)0.064 (3)0.066 (3)−0.001 (2)−0.003 (2)−0.003 (2)
C90.064 (3)0.061 (3)0.065 (3)0.005 (2)−0.004 (2)0.000 (2)
C100.062 (3)0.067 (3)0.066 (3)−0.004 (3)−0.006 (2)0.000 (2)
C110.062 (3)0.082 (4)0.096 (4)0.001 (3)0.000 (3)0.015 (3)
C120.071 (4)0.102 (4)0.113 (5)0.003 (3)0.013 (3)0.031 (3)
C130.056 (3)0.105 (5)0.123 (5)0.012 (3)0.015 (3)0.010 (4)
C140.067 (4)0.078 (4)0.109 (4)0.005 (3)0.003 (3)0.010 (3)
C150.069 (3)0.067 (3)0.084 (3)−0.007 (3)−0.002 (3)−0.001 (3)
C160.061 (3)0.061 (3)0.066 (3)0.004 (2)−0.004 (2)0.002 (2)
C170.073 (3)0.068 (3)0.072 (3)0.003 (3)0.003 (3)0.001 (3)
C180.091 (4)0.084 (4)0.074 (4)0.016 (3)0.007 (3)−0.006 (3)
C190.078 (4)0.099 (4)0.067 (3)0.020 (3)0.017 (3)0.023 (3)
C200.080 (4)0.074 (4)0.085 (4)0.006 (3)0.006 (3)0.017 (3)
C210.077 (3)0.068 (3)0.071 (3)0.002 (3)−0.002 (3)0.001 (3)
F1—C191.368 (5)C14—C151.384 (7)
F2—C131.359 (6)C16—C211.382 (6)
N1—C61.413 (6)C16—C171.382 (6)
N1—C71.464 (6)C17—C181.387 (6)
N2—C11.408 (6)C18—C191.370 (8)
N2—C91.282 (6)C19—C201.349 (7)
N1—H1N0.86 (3)C20—C211.381 (6)
C1—C61.406 (7)C2—H20.9300
C1—C21.383 (6)C3—H30.9300
C2—C31.370 (7)C4—H40.9300
C3—C41.388 (7)C5—H50.9300
C4—C51.372 (7)C7—H70.98 (3)
C5—C61.385 (7)C8—H8A0.9700
C7—C81.539 (6)C8—H8B0.9700
C7—C161.520 (6)C11—H110.9300
C8—C91.513 (6)C12—H120.9300
C9—C101.479 (6)C14—H140.9300
C10—C111.369 (6)C15—H150.9300
C10—C151.400 (6)C17—H170.9300
C11—C121.386 (7)C18—H180.9300
C12—C131.376 (8)C20—H200.9300
C13—C141.358 (8)C21—H210.9300
C6—N1—C7120.6 (4)F1—C19—C18117.4 (4)
C1—N2—C9120.4 (4)C18—C19—C20123.3 (4)
C7—N1—H1N116 (4)C19—C20—C21118.2 (5)
C6—N1—H1N105 (3)C16—C21—C20121.2 (4)
N2—C1—C6123.7 (4)C1—C2—H2119.00
C2—C1—C6119.0 (5)C3—C2—H2119.00
N2—C1—C2117.1 (4)C2—C3—H3121.00
C1—C2—C3122.6 (4)C4—C3—H3121.00
C2—C3—C4118.3 (4)C3—C4—H4120.00
C3—C4—C5120.0 (5)C5—C4—H4120.00
C4—C5—C6122.1 (5)C4—C5—H5119.00
C1—C6—C5117.9 (4)C6—C5—H5119.00
N1—C6—C1121.1 (4)N1—C7—H7113 (3)
N1—C6—C5120.5 (4)C8—C7—H7107 (3)
N1—C7—C16110.7 (4)C16—C7—H7107 (2)
N1—C7—C8109.1 (3)C7—C8—H8A109.00
C8—C7—C16110.9 (4)C7—C8—H8B109.00
C7—C8—C9114.3 (3)C9—C8—H8A109.00
N2—C9—C8122.2 (4)C9—C8—H8B109.00
C8—C9—C10119.9 (4)H8A—C8—H8B108.00
N2—C9—C10117.8 (4)C10—C11—H11119.00
C9—C10—C15118.7 (4)C12—C11—H11119.00
C9—C10—C11122.7 (4)C11—C12—H12122.00
C11—C10—C15118.6 (4)C13—C12—H12122.00
C10—C11—C12122.1 (4)C13—C14—H14121.00
C11—C12—C13116.9 (5)C15—C14—H14121.00
C12—C13—C14123.8 (5)C10—C15—H15120.00
F2—C13—C14119.0 (5)C14—C15—H15120.00
F2—C13—C12117.3 (5)C16—C17—H17119.00
C13—C14—C15118.1 (5)C18—C17—H17120.00
C10—C15—C14120.7 (4)C17—C18—H18121.00
C17—C16—C21118.6 (4)C19—C18—H18121.00
C7—C16—C17123.3 (4)C19—C20—H20121.00
C7—C16—C21117.8 (4)C21—C20—H20121.00
C16—C17—C18120.9 (4)C16—C21—H21119.00
C17—C18—C19117.7 (4)C20—C21—H21119.00
F1—C19—C20119.3 (5)
C6—N1—C7—C832.4 (5)C7—C8—C9—N2−74.6 (5)
C6—N1—C7—C16154.7 (4)N2—C9—C10—C11159.0 (4)
C7—N1—C6—C1−67.0 (6)N2—C9—C10—C15−21.1 (6)
C7—N1—C6—C5120.7 (5)C8—C9—C10—C11−24.2 (6)
C9—N2—C1—C640.9 (6)C8—C9—C10—C15155.7 (4)
C9—N2—C1—C2−144.4 (4)C9—C10—C11—C12−178.6 (4)
C1—N2—C9—C85.1 (6)C15—C10—C11—C121.5 (7)
C1—N2—C9—C10−178.2 (4)C9—C10—C15—C14−179.7 (4)
N2—C1—C6—C5176.5 (4)C11—C10—C15—C140.2 (7)
N2—C1—C2—C3−177.7 (4)C10—C11—C12—C13−1.6 (7)
C6—C1—C2—C3−2.7 (7)C11—C12—C13—F2−178.8 (5)
N2—C1—C6—N13.9 (7)C11—C12—C13—C140.1 (8)
C2—C1—C6—N1−170.7 (4)F2—C13—C14—C15−179.6 (5)
C2—C1—C6—C51.8 (6)C12—C13—C14—C151.5 (8)
C1—C2—C3—C42.0 (7)C13—C14—C15—C10−1.6 (7)
C2—C3—C4—C5−0.5 (7)C7—C16—C17—C18−171.8 (4)
C3—C4—C5—C6−0.3 (7)C21—C16—C17—C181.7 (6)
C4—C5—C6—C1−0.4 (7)C7—C16—C21—C20171.2 (4)
C4—C5—C6—N1172.2 (4)C17—C16—C21—C20−2.6 (6)
N1—C7—C8—C948.6 (5)C16—C17—C18—C190.6 (7)
N1—C7—C16—C21163.2 (4)C17—C18—C19—F1177.5 (4)
C8—C7—C16—C1797.9 (5)C17—C18—C19—C20−2.2 (8)
C8—C7—C16—C21−75.6 (5)F1—C19—C20—C21−178.4 (4)
N1—C7—C16—C17−23.3 (6)C18—C19—C20—C211.3 (8)
C16—C7—C8—C9−73.5 (4)C19—C20—C21—C161.2 (7)
C7—C8—C9—C10108.7 (4)
Cg1 and Cg2 are the centroids of the benzene rings of the two fluorophenyl substituents (C10–C15 and C16–C21, respectively).
D—H···AD—HH···AD···AD—H···A
C5—H5···F1i0.932.543.469 (6)175
N1—H1N···Cg2i0.86 (3)2.82 (5)3.601 (4)151 (4)
C2—H2···Cg1ii0.932.893.640 (5)138
C11—H11···Cg20.932.793.494 (5)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the benzene rings of the two fluorophenyl substituents (C10–C15 and C16–C21, respectively).

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯F1i0.932.543.469 (6)175
N1—H1NCg2i0.86 (3)2.82 (5)3.601 (4)151 (4)
C2—H2⋯Cg1ii0.932.893.640 (5)138
C11—H11⋯Cg20.932.793.494 (5)134

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Do C-H...O and C-H...pi interactions help to stabilize a non-centrosymmetric structure for racemic 2,3-dibromo-1,3-diphenylpropan-1-one?

Authors:  William T A Harrison; H S Yathirajan; B K Sarojini; B Narayana; H G Anilkumar
Journal:  Acta Crystallogr C       Date:  2005-11-30       Impact factor: 1.172

  2 in total
  13 in total

1.  1,3-Bis(4-fluoro-phen-yl)-N,N'-(propane-1,3-diyl-idene)dihydroxyl-amine.

Authors:  S Samshuddin; Ray J Butcher; Mehmet Akkurt; B Narayana; H S Yathirajan; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

2.  (2E)-1-(3,4-Dichloro-phen-yl)-3-(2-hy-droxy-phen-yl)prop-2-en-1-one.

Authors:  Jerry P Jasinski; James A Golen; Prakash S Nayak; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

3.  (E)-1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)-3-(6-meth-oxy-naphthalen-2-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; S Samshuddin; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16

4.  (E)-1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)-3-(4-nitro-phen-yl)prop-2-en-1-one.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; S Samshuddin; Badiadka Narayana; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-05

5.  3,5-Bis(4-meth-oxy-phen-yl)-4,5-dihydro-isoxazole.

Authors:  S Samshuddin; Ray J Butcher; Mehmet Akkurt; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

6.  (E)-1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)-3-phenyl-prop-2-en-1-one.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; S Samshuddin; Badiadka Narayana; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

7.  (E)-1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)-3-(4-meth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; S Samshuddin; Badiadka Narayana; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16

8.  (2E)-1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)-3-(4-fluoro-phen-yl)prop-2-en-1-one.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; S Samshuddin; Badiadka Narayana; Balladka K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22

9.  (2E)-1-(4-Chloro-phen-yl)-3-(4-nitro-phen-yl)prop-2-en-1-one.

Authors:  T S Yamuna; H S Yathirajan; Jerry P Jasinski; Amanda C Keeley; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-27

10.  2-[3,5-Bis(4-meth-oxy-phen-yl)-4,5-di-hydro-1H-pyrazol-1-yl]-4,6-bis-(4-meth-oxy-phen-yl)pyrimidine.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; S Samshuddin; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.