Literature DB >> 21754503

2-[2-(Benzyl-sulfan-yl)phen-yl]-1,1,3,3-tetra-methyl-guanidine.

Adam Neuba1, Ulrich Flörke, Gerald Henkel.   

Abstract

The mol-ecular structure of the title compound, C(18)H(23)N(3)S, shows it to be a derivative of an amino-thio-phenol possessing a tetra-methyl-guanidine group with a localized C=N double bond of 1.304 (2) Å and a protected thiol functional group as an S-benzyl thio-ether. The two aromatic ring planes make a dihedral angle of 67.69 (6)°.

Entities:  

Year:  2011        PMID: 21754503      PMCID: PMC3089166          DOI: 10.1107/S1600536811014577

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthesis, see: Neuba (2009 ▶); Lindoy & Livingstone (1968 ▶); Herres-Pawlis et al. (2005 ▶). For related structures, see: Neuba et al. (2007a ▶,b ▶,c ▶); Herres et al. (2004 ▶); Raab et al. (2003 ▶, 2002 ▶); Peters et al. (2008 ▶). For complexes of metal centres with bis­(tetra­methylguanidino)propyl­ene and amine guanidine hybrids, see: Harmjanz (1997 ▶); Waden (1999 ▶); Pohl et al. (2000 ▶); Schneider (2000 ▶); Wittmann (1999 ▶); Wittmann et al. (2001 ▶); Herres et al. (2005 ▶); Herres-Pawlis et al. (2009 ▶); Börner et al. (2007 ▶, 2009 ▶). For sulfur guanidine hybrids based on amino­thio­phenol and cysteamine, see: Neuba (2009 ▶); Neuba et al. (2008a ▶,b ▶, 2010 ▶, 2011 ▶).

Experimental

Crystal data

C18H23N3S M = 313.45 Monoclinic, a = 7.869 (2) Å b = 26.850 (7) Å c = 8.314 (2) Å β = 106.959 (5)° V = 1680.2 (8) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 120 K 0.42 × 0.33 × 0.29 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.923, T max = 0.946 14278 measured reflections 3988 independent reflections 2816 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.091 S = 0.92 3988 reflections 203 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.34 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811014577/bt5518sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014577/bt5518Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H23N3SF(000) = 672
Mr = 313.45Dx = 1.239 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 842 reflections
a = 7.869 (2) Åθ = 2.7–27.7°
b = 26.850 (7) ŵ = 0.19 mm1
c = 8.314 (2) ÅT = 120 K
β = 106.959 (5)°Block, colourless
V = 1680.2 (8) Å30.42 × 0.33 × 0.29 mm
Z = 4
Bruker SMART APEX diffractometer3988 independent reflections
Radiation source: sealed tube2816 reflections with I > 2σ(I)
graphiteRint = 0.066
φ and ω scansθmax = 27.9°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −10→9
Tmin = 0.923, Tmax = 0.946k = −35→35
14278 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: difference Fourier map
wR(F2) = 0.091H-atom parameters constrained
S = 0.92w = 1/[σ2(Fo2) + (0.0443P)2] where P = (Fo2 + 2Fc2)/3
3988 reflections(Δ/σ)max = 0.001
203 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.48274 (6)0.392868 (13)0.76377 (5)0.02350 (11)
N10.64141 (18)0.33140 (4)0.56770 (16)0.0214 (3)
N20.93294 (17)0.29594 (4)0.63993 (16)0.0232 (3)
N30.68294 (18)0.24922 (4)0.50838 (17)0.0239 (3)
C10.7516 (2)0.29479 (5)0.57258 (18)0.0203 (3)
C21.0512 (2)0.27118 (7)0.5595 (2)0.0362 (4)
H2A0.98060.25240.46150.054*
H2B1.12940.24830.63950.054*
H2C1.12310.29610.52320.054*
C31.0191 (2)0.33296 (6)0.7646 (2)0.0291 (4)
H3A1.05870.36090.70890.044*
H3B1.12200.31790.84660.044*
H3C0.93490.34500.82250.044*
C40.4983 (2)0.24676 (6)0.4081 (2)0.0311 (4)
H4A0.42230.24450.48250.047*
H4B0.48000.21730.33540.047*
H4C0.46780.27680.33850.047*
C50.7491 (2)0.20329 (5)0.5999 (2)0.0309 (4)
H5A0.87320.20790.66660.046*
H5B0.74140.17600.51960.046*
H5C0.67720.19520.67460.046*
C60.6947 (2)0.38116 (5)0.56372 (19)0.0192 (3)
C70.7988 (2)0.39792 (5)0.4653 (2)0.0233 (3)
H7A0.84700.37440.40520.028*
C80.8338 (2)0.44823 (6)0.4527 (2)0.0252 (4)
H8A0.90420.45890.38380.030*
C90.7656 (2)0.48271 (5)0.5412 (2)0.0236 (3)
H9A0.79050.51710.53430.028*
C100.6610 (2)0.46705 (5)0.63978 (19)0.0220 (3)
H10A0.61530.49080.70090.026*
C110.6223 (2)0.41684 (5)0.65010 (18)0.0192 (3)
C120.4411 (2)0.44748 (5)0.8758 (2)0.0243 (4)
H12A0.55490.46150.94630.029*
H12B0.37970.47330.79470.029*
C130.3272 (2)0.43232 (5)0.98479 (19)0.0210 (3)
C140.4001 (2)0.40508 (6)1.1318 (2)0.0274 (4)
H14A0.52260.39661.16350.033*
C150.2967 (3)0.39029 (6)1.2317 (2)0.0317 (4)
H15A0.34800.37191.33160.038*
C160.1184 (3)0.40237 (6)1.1860 (2)0.0332 (4)
H16A0.04670.39191.25390.040*
C170.0442 (2)0.42969 (6)1.0417 (2)0.0329 (4)
H17A−0.07810.43841.01130.039*
C180.1484 (2)0.44444 (6)0.9414 (2)0.0266 (4)
H18A0.09670.46300.84200.032*
U11U22U33U12U13U23
S10.0297 (2)0.01664 (17)0.0296 (2)−0.00079 (16)0.01715 (18)−0.00202 (15)
N10.0224 (7)0.0167 (6)0.0277 (7)−0.0022 (5)0.0116 (6)−0.0044 (5)
N20.0206 (7)0.0215 (6)0.0263 (7)−0.0002 (5)0.0047 (6)−0.0055 (5)
N30.0234 (7)0.0164 (6)0.0296 (7)−0.0001 (5)0.0043 (6)−0.0045 (5)
C10.0237 (9)0.0187 (7)0.0199 (8)−0.0011 (6)0.0089 (7)−0.0020 (6)
C20.0267 (10)0.0419 (10)0.0414 (11)0.0044 (8)0.0121 (9)−0.0069 (8)
C30.0288 (10)0.0255 (8)0.0281 (9)−0.0054 (7)0.0008 (8)−0.0025 (7)
C40.0253 (10)0.0251 (8)0.0400 (10)−0.0031 (7)0.0049 (8)−0.0076 (7)
C50.0350 (10)0.0193 (7)0.0367 (10)0.0001 (7)0.0076 (9)−0.0016 (7)
C60.0175 (8)0.0181 (7)0.0219 (8)−0.0009 (6)0.0058 (7)−0.0018 (6)
C70.0221 (9)0.0230 (8)0.0277 (8)0.0002 (6)0.0119 (7)−0.0037 (6)
C80.0228 (9)0.0273 (8)0.0279 (9)−0.0026 (7)0.0111 (7)0.0035 (7)
C90.0242 (9)0.0168 (7)0.0289 (9)−0.0020 (6)0.0061 (7)0.0020 (6)
C100.0228 (9)0.0173 (7)0.0252 (8)0.0013 (6)0.0059 (7)−0.0012 (6)
C110.0182 (8)0.0195 (7)0.0209 (8)−0.0004 (6)0.0071 (7)−0.0002 (6)
C120.0305 (10)0.0174 (7)0.0280 (9)0.0022 (6)0.0131 (8)−0.0036 (6)
C130.0258 (9)0.0169 (7)0.0218 (8)0.0007 (6)0.0092 (7)−0.0061 (6)
C140.0259 (9)0.0296 (8)0.0267 (9)0.0056 (7)0.0076 (8)−0.0013 (7)
C150.0425 (11)0.0296 (8)0.0243 (9)0.0015 (8)0.0117 (8)0.0015 (7)
C160.0423 (12)0.0292 (9)0.0372 (10)−0.0078 (8)0.0260 (9)−0.0093 (7)
C170.0224 (10)0.0332 (9)0.0451 (11)0.0010 (7)0.0129 (9)−0.0113 (8)
C180.0282 (10)0.0235 (8)0.0281 (9)0.0028 (7)0.0082 (8)−0.0025 (6)
S1—C111.7661 (15)C6—C111.413 (2)
S1—C121.8175 (15)C7—C81.389 (2)
N1—C11.3035 (19)C7—H7A0.9500
N1—C61.4033 (18)C8—C91.384 (2)
N2—C11.373 (2)C8—H8A0.9500
N2—C31.4536 (19)C9—C101.386 (2)
N2—C21.455 (2)C9—H9A0.9500
N3—C11.3804 (18)C10—C111.390 (2)
N3—C41.451 (2)C10—H10A0.9500
N3—C51.4628 (19)C12—C131.505 (2)
C2—H2A0.9800C12—H12A0.9900
C2—H2B0.9800C12—H12B0.9900
C2—H2C0.9800C13—C181.385 (2)
C3—H3A0.9800C13—C141.396 (2)
C3—H3B0.9800C14—C151.380 (2)
C3—H3C0.9800C14—H14A0.9500
C4—H4A0.9800C15—C161.381 (3)
C4—H4B0.9800C15—H15A0.9500
C4—H4C0.9800C16—C171.382 (2)
C5—H5A0.9800C16—H16A0.9500
C5—H5B0.9800C17—C181.387 (2)
C5—H5C0.9800C17—H17A0.9500
C6—C71.391 (2)C18—H18A0.9500
C11—S1—C12102.33 (7)C8—C7—H7A119.2
C1—N1—C6121.20 (13)C6—C7—H7A119.2
C1—N2—C3121.30 (13)C9—C8—C7119.62 (14)
C1—N2—C2122.01 (13)C9—C8—H8A120.2
C3—N2—C2114.35 (14)C7—C8—H8A120.2
C1—N3—C4118.43 (13)C8—C9—C10120.05 (14)
C1—N3—C5120.43 (14)C8—C9—H9A120.0
C4—N3—C5113.92 (13)C10—C9—H9A120.0
N1—C1—N2126.77 (14)C9—C10—C11120.61 (14)
N1—C1—N3118.33 (15)C9—C10—H10A119.7
N2—C1—N3114.87 (13)C11—C10—H10A119.7
N2—C2—H2A109.5C10—C11—C6119.88 (14)
N2—C2—H2B109.5C10—C11—S1124.60 (12)
H2A—C2—H2B109.5C6—C11—S1115.51 (11)
N2—C2—H2C109.5C13—C12—S1108.58 (10)
H2A—C2—H2C109.5C13—C12—H12A110.0
H2B—C2—H2C109.5S1—C12—H12A110.0
N2—C3—H3A109.5C13—C12—H12B110.0
N2—C3—H3B109.5S1—C12—H12B110.0
H3A—C3—H3B109.5H12A—C12—H12B108.4
N2—C3—H3C109.5C18—C13—C14118.55 (15)
H3A—C3—H3C109.5C18—C13—C12121.19 (14)
H3B—C3—H3C109.5C14—C13—C12120.25 (15)
N3—C4—H4A109.5C15—C14—C13120.91 (16)
N3—C4—H4B109.5C15—C14—H14A119.5
H4A—C4—H4B109.5C13—C14—H14A119.5
N3—C4—H4C109.5C14—C15—C16119.81 (16)
H4A—C4—H4C109.5C14—C15—H15A120.1
H4B—C4—H4C109.5C16—C15—H15A120.1
N3—C5—H5A109.5C15—C16—C17120.10 (16)
N3—C5—H5B109.5C15—C16—H16A120.0
H5A—C5—H5B109.5C17—C16—H16A120.0
N3—C5—H5C109.5C16—C17—C18119.97 (17)
H5A—C5—H5C109.5C16—C17—H17A120.0
H5B—C5—H5C109.5C18—C17—H17A120.0
C7—C6—N1123.59 (13)C13—C18—C17120.66 (16)
C7—C6—C11118.26 (13)C13—C18—H18A119.7
N1—C6—C11117.77 (13)C17—C18—H18A119.7
C8—C7—C6121.54 (14)
C6—N1—C1—N228.2 (2)C9—C10—C11—S1−177.01 (12)
C6—N1—C1—N3−153.64 (14)C7—C6—C11—C10−2.2 (2)
C3—N2—C1—N121.5 (2)N1—C6—C11—C10−175.37 (14)
C2—N2—C1—N1−140.14 (17)C7—C6—C11—S1176.95 (12)
C3—N2—C1—N3−156.70 (13)N1—C6—C11—S13.76 (18)
C2—N2—C1—N341.6 (2)C12—S1—C11—C10−7.87 (16)
C4—N3—C1—N112.7 (2)C12—S1—C11—C6173.05 (12)
C5—N3—C1—N1−135.83 (16)C11—S1—C12—C13−178.03 (11)
C4—N3—C1—N2−168.95 (14)S1—C12—C13—C18−105.18 (15)
C5—N3—C1—N242.6 (2)S1—C12—C13—C1474.12 (16)
C1—N1—C6—C742.6 (2)C18—C13—C14—C150.3 (2)
C1—N1—C6—C11−144.63 (15)C12—C13—C14—C15−179.05 (14)
N1—C6—C7—C8173.60 (15)C13—C14—C15—C160.2 (2)
C11—C6—C7—C80.8 (2)C14—C15—C16—C17−0.8 (2)
C6—C7—C8—C90.7 (2)C15—C16—C17—C180.9 (2)
C7—C8—C9—C10−0.9 (2)C14—C13—C18—C17−0.2 (2)
C8—C9—C10—C11−0.5 (2)C12—C13—C18—C17179.14 (14)
C9—C10—C11—C62.0 (2)C16—C17—C18—C13−0.4 (2)
  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1,8-bis(tetramethylguanidino)naphthalene (TMGN): a new, superbasic and kinetically active "proton sponge".

Authors:  Volker Raab; Jennifer Kipke; Ruth M Gschwind; Jörg Sundermeyer
Journal:  Chemistry       Date:  2002-04-02       Impact factor: 5.236

3.  N,N'-Bis(dipiperidin-1-ylmethylene)propane-1,3-diamine and N,N'-bis(1,3-dimethylperhydropyrimidin-2-ylidene)propane-1,3-diamine.

Authors:  Sonja Herres; Ulrich Flörke; Gerald Henkel
Journal:  Acta Crystallogr C       Date:  2004-04-30       Impact factor: 1.172

4.  1,8-bis(dimethylethyleneguanidino)naphthalene: tailoring the basicity of bisguanidine "proton sponges" by experiment and theory.

Authors:  Volker Raab; Klaus Harms; Jörg Sundermeyer; Borislav Kovacević; Zvonimir B Maksić
Journal:  J Org Chem       Date:  2003-11-14       Impact factor: 4.354

5.  Mono- and diprotonation of the superbasic bisguanidine 1,2-Bis(N,N,N',N'-tetramethylguanidino)benzene (btmgb) and Pt II and Pt IV complexes of chelating bisguanidines and guanidinates.

Authors:  Anastasia Peters; Ute Wild; Olaf Hübner; Elisabeth Kaifer; Hans-Jörg Himmel
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

6.  Phenolate hydroxylation in a bis(mu-oxo)dicopper(III) complex: lessons from the guanidine/amine series.

Authors:  Sonja Herres-Pawlis; Pratik Verma; Roxana Haase; Peng Kang; Christopher T Lyons; Erik C Wasinger; Ulrich Flörke; Gerald Henkel; T Daniel P Stack
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

7.  Lactide polymerisation with air-stable and highly active zinc complexes with guanidine-pyridine hybrid ligands.

Authors:  Janna Börner; Ulrich Flörke; Klaus Huber; Artjom Döring; Dirk Kuckling; Sonja Herres-Pawlis
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

  7 in total

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