Literature DB >> 21754495

(2E)-2-[2-(Cyclo-hexyl-carbamothio-yl)hydrazinylidene]-propanoic acid.

Md Abu Affan, Md Abdus Salam, Fasihuddin B Ahmad, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title thio-urea derivative, C(10)H(17)n class="Chemical">N(3)O(2)S, the carboxyl group and the least-squares plane through the cyclo-hexyl ring are twisted out of the plane through the central CN(3)S residue; the respective dihedral angles are 7.18 (8) and 62.29 (4)°. The conformation about the azomethine bond [1.275 (2) Å] is E. The NH groups are anti, with one forming an intra-molecular N-H⋯N hydrogen bond. The main feature of the crystal structure is the formation of linear supra-molecular chains along [110] mediated by alternating pairs of O-H⋯O and pairs of N-H⋯S hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754495      PMCID: PMC3089072          DOI: 10.1107/S1600536811014449

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related thio­urea structures, see: Normaya et al. (2011 ▶); n class="Species">Salam et al. (2011 ▶).

Experimental

Crystal data

C10H17N3O2S M = 243.33 Monoclinic, a = 8.9204 (2) Å b = 6.0350 (2) Å c = 22.4750 (6) Å β = 90.051 (3)° V = 1209.93 (6) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent Supernova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.687, T max = 1.000 7394 measured reflections 2723 independent reflections 2251 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.143 S = 0.98 2723 reflections 158 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811014449/hb5851sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014449/hb5851Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H17N3O2SF(000) = 520
Mr = 243.33Dx = 1.336 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3312 reflections
a = 8.9204 (2) Åθ = 2.3–29.1°
b = 6.0350 (2) ŵ = 0.26 mm1
c = 22.4750 (6) ÅT = 100 K
β = 90.051 (3)°Prism, colourless
V = 1209.93 (6) Å30.30 × 0.20 × 0.10 mm
Z = 4
Agilent Supernova Dual diffractometer with an Atlas detector2723 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2251 reflections with I > 2σ(I)
MirrorRint = 0.036
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.5°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −6→7
Tmin = 0.687, Tmax = 1.000l = −29→29
7394 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
2723 reflections(Δ/σ)max = 0.001
158 parametersΔρmax = 0.36 e Å3
3 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.07001 (5)1.46426 (7)0.59008 (2)0.01940 (18)
O10.65476 (14)0.6300 (2)0.54143 (6)0.0209 (3)
O20.53180 (13)0.7099 (2)0.45694 (6)0.0196 (3)
N10.80028 (16)1.0010 (2)0.53480 (7)0.0156 (3)
N20.88614 (16)1.1878 (2)0.53543 (7)0.0170 (3)
N30.94326 (16)1.0938 (3)0.63114 (7)0.0169 (3)
C10.62814 (18)0.7522 (3)0.49413 (8)0.0164 (4)
C20.72145 (19)0.9564 (3)0.48899 (8)0.0162 (4)
C30.7098 (2)1.0904 (3)0.43363 (8)0.0211 (4)
H3A0.69041.24550.44400.032*
H3B0.62731.03390.40910.032*
H3C0.80391.08000.41130.032*
C40.96146 (18)1.2376 (3)0.58689 (8)0.0156 (4)
C51.00682 (18)1.1176 (3)0.69060 (7)0.0157 (4)
H51.10551.19510.68710.019*
C61.0336 (2)0.8900 (3)0.71759 (9)0.0210 (4)
H6A1.10370.80540.69210.025*
H6B0.93770.80760.71940.025*
C71.0991 (2)0.9113 (3)0.78024 (8)0.0221 (4)
H7A1.11160.76180.79770.026*
H7B1.19940.98110.77790.026*
C80.9984 (2)1.0501 (3)0.82063 (9)0.0235 (4)
H8A0.90190.97250.82670.028*
H8B1.04711.06890.85990.028*
C90.9696 (2)1.2771 (3)0.79289 (9)0.0250 (4)
H9A0.89881.36100.81820.030*
H9B1.06481.36110.79120.030*
C100.9048 (2)1.2561 (3)0.73033 (8)0.0212 (4)
H10A0.80461.18580.73250.025*
H10B0.89241.40550.71280.025*
H10.602 (2)0.514 (3)0.5431 (12)0.040 (7)*
H20.892 (2)1.275 (3)0.5035 (6)0.026 (6)*
H30.888 (2)0.976 (2)0.6260 (11)0.029 (6)*
U11U22U33U12U13U23
S10.0251 (3)0.0177 (3)0.0154 (3)−0.00825 (16)−0.0030 (2)0.00088 (18)
O10.0233 (6)0.0208 (7)0.0185 (7)−0.0089 (5)−0.0048 (5)0.0055 (6)
O20.0200 (6)0.0205 (7)0.0182 (7)−0.0064 (5)−0.0030 (5)0.0018 (5)
N10.0148 (7)0.0144 (7)0.0178 (8)−0.0030 (5)0.0009 (6)−0.0010 (6)
N20.0214 (7)0.0140 (7)0.0157 (8)−0.0039 (6)−0.0007 (6)0.0036 (6)
N30.0196 (7)0.0172 (7)0.0140 (8)−0.0068 (6)−0.0047 (6)0.0006 (6)
C10.0159 (8)0.0178 (9)0.0155 (9)0.0010 (7)0.0000 (7)−0.0017 (7)
C20.0153 (8)0.0168 (9)0.0166 (9)−0.0015 (6)0.0005 (7)0.0006 (7)
C30.0247 (9)0.0215 (9)0.0169 (9)−0.0069 (7)−0.0040 (7)0.0022 (8)
C40.0154 (8)0.0160 (8)0.0155 (8)−0.0002 (6)0.0004 (7)−0.0008 (7)
C50.0173 (8)0.0184 (9)0.0112 (8)−0.0030 (7)−0.0038 (6)−0.0006 (7)
C60.0255 (9)0.0168 (9)0.0208 (9)0.0006 (7)0.0006 (8)−0.0003 (8)
C70.0266 (9)0.0186 (9)0.0210 (10)0.0007 (7)−0.0032 (8)0.0036 (8)
C80.0301 (10)0.0263 (10)0.0141 (9)−0.0050 (8)−0.0001 (8)−0.0016 (8)
C90.0318 (10)0.0241 (10)0.0191 (9)0.0032 (8)−0.0004 (8)−0.0057 (8)
C100.0255 (9)0.0197 (9)0.0185 (9)0.0037 (7)−0.0007 (8)−0.0011 (8)
S1—C41.6774 (18)C5—C101.525 (2)
O1—C11.315 (2)C5—H51.0000
O1—H10.845 (10)C6—C71.530 (3)
O2—C11.225 (2)C6—H6A0.9900
N1—C21.275 (2)C6—H6B0.9900
N1—N21.363 (2)C7—C81.528 (3)
N2—C41.370 (2)C7—H7A0.9900
N2—H20.892 (9)C7—H7B0.9900
N3—C41.330 (2)C8—C91.527 (3)
N3—C51.458 (2)C8—H8A0.9900
N3—H30.870 (9)C8—H8B0.9900
C1—C21.491 (2)C9—C101.525 (3)
C2—C31.488 (3)C9—H9A0.9900
C3—H3A0.9800C9—H9B0.9900
C3—H3B0.9800C10—H10A0.9900
C3—H3C0.9800C10—H10B0.9900
C5—C61.520 (3)
C1—O1—H1113.7 (18)C5—C6—H6A109.5
C2—N1—N2119.52 (15)C7—C6—H6A109.5
N1—N2—C4117.71 (14)C5—C6—H6B109.5
N1—N2—H2121.1 (14)C7—C6—H6B109.5
C4—N2—H2121.2 (14)H6A—C6—H6B108.1
C4—N3—C5124.97 (14)C8—C7—C6111.63 (15)
C4—N3—H3120.2 (16)C8—C7—H7A109.3
C5—N3—H3114.8 (16)C6—C7—H7A109.3
O2—C1—O1124.08 (15)C8—C7—H7B109.3
O2—C1—C2120.71 (15)C6—C7—H7B109.3
O1—C1—C2115.18 (15)H7A—C7—H7B108.0
N1—C2—C3126.77 (15)C9—C8—C7110.38 (16)
N1—C2—C1114.80 (15)C9—C8—H8A109.6
C3—C2—C1118.38 (15)C7—C8—H8A109.6
C2—C3—H3A109.5C9—C8—H8B109.6
C2—C3—H3B109.5C7—C8—H8B109.6
H3A—C3—H3B109.5H8A—C8—H8B108.1
C2—C3—H3C109.5C10—C9—C8111.43 (15)
H3A—C3—H3C109.5C10—C9—H9A109.3
H3B—C3—H3C109.5C8—C9—H9A109.3
N3—C4—N2115.34 (15)C10—C9—H9B109.3
N3—C4—S1124.83 (14)C8—C9—H9B109.3
N2—C4—S1119.82 (13)H9A—C9—H9B108.0
N3—C5—C6109.71 (14)C5—C10—C9111.06 (14)
N3—C5—C10111.03 (14)C5—C10—H10A109.4
C6—C5—C10110.79 (15)C9—C10—H10A109.4
N3—C5—H5108.4C5—C10—H10B109.4
C6—C5—H5108.4C9—C10—H10B109.4
C10—C5—H5108.4H10A—C10—H10B108.0
C5—C6—C7110.56 (15)
C2—N1—N2—C4175.80 (15)C4—N3—C5—C6−151.10 (16)
N2—N1—C2—C3−0.7 (3)C4—N3—C5—C1086.1 (2)
N2—N1—C2—C1−178.00 (14)N3—C5—C6—C7−179.54 (14)
O2—C1—C2—N1169.21 (15)C10—C5—C6—C7−56.59 (19)
O1—C1—C2—N1−8.9 (2)C5—C6—C7—C856.5 (2)
O2—C1—C2—C3−8.4 (2)C6—C7—C8—C9−55.6 (2)
O1—C1—C2—C3173.52 (15)C7—C8—C9—C1055.2 (2)
C5—N3—C4—N2−177.12 (15)N3—C5—C10—C9178.84 (14)
C5—N3—C4—S14.2 (2)C6—C5—C10—C956.7 (2)
N1—N2—C4—N30.7 (2)C8—C9—C10—C5−56.1 (2)
N1—N2—C4—S1179.49 (12)
D—H···AD—HH···AD···AD—H···A
N3—H3···N10.87 (1)2.20 (2)2.574 (2)106.(2)
O1—H1···O2i0.85 (1)1.80 (1)2.6416 (17)172 (3)
N2—H2···S1ii0.89 (1)2.65 (1)3.5384 (15)176.(2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯N10.87 (1)2.20 (2)2.574 (2)106 (2)
O1—H1⋯O2i0.85 (1)1.80 (1)2.6416 (17)172 (3)
N2—H2⋯S1ii0.89 (1)2.65 (1)3.5384 (15)176 (2)

Symmetry codes: (i) ; (ii) .

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2.  3-(2-Hy-droxy-phen-yl)-1-{(E)-[1-(pyrazin-2-yl)ethyl-idene]amino}-thio-urea monohydrate.

Authors:  Erna Normaya; Yang Farina; Siti Nadiah Abd Halim; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-23

3.  1-Cyclo-hexyl-3-{(E)-[1-(pyridin-2-yl)ethyl-idene]amino}-thio-urea.

Authors:  Md Abdus Salam; Md Abu Affan; Fasihuddin B Ahmad; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-23
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1.  Crystal structure of 4-cyclo-hexyl-1-(propan-2-yl-idene)thio-semicarbazide.

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