| Literature DB >> 21754495 |
Md Abu Affan, Md Abdus Salam, Fasihuddin B Ahmad, Seik Weng Ng, Edward R T Tiekink.
Abstract
In the title thio-urea derivative, C(10)H(17)Entities:
Year: 2011 PMID: 21754495 PMCID: PMC3089072 DOI: 10.1107/S1600536811014449
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H17N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3312 reflections |
| θ = 2.3–29.1° | |
| µ = 0.26 mm−1 | |
| β = 90.051 (3)° | Prism, colourless |
| 0.30 × 0.20 × 0.10 mm | |
| Agilent Supernova Dual diffractometer with an Atlas detector | 2723 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 2251 reflections with |
| Mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.5°, θmin = 2.5° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7394 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2723 reflections | (Δ/σ)max = 0.001 |
| 158 parameters | Δρmax = 0.36 e Å−3 |
| 3 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 1.07001 (5) | 1.46426 (7) | 0.59008 (2) | 0.01940 (18) | |
| O1 | 0.65476 (14) | 0.6300 (2) | 0.54143 (6) | 0.0209 (3) | |
| O2 | 0.53180 (13) | 0.7099 (2) | 0.45694 (6) | 0.0196 (3) | |
| N1 | 0.80028 (16) | 1.0010 (2) | 0.53480 (7) | 0.0156 (3) | |
| N2 | 0.88614 (16) | 1.1878 (2) | 0.53543 (7) | 0.0170 (3) | |
| N3 | 0.94326 (16) | 1.0938 (3) | 0.63114 (7) | 0.0169 (3) | |
| C1 | 0.62814 (18) | 0.7522 (3) | 0.49413 (8) | 0.0164 (4) | |
| C2 | 0.72145 (19) | 0.9564 (3) | 0.48899 (8) | 0.0162 (4) | |
| C3 | 0.7098 (2) | 1.0904 (3) | 0.43363 (8) | 0.0211 (4) | |
| H3A | 0.6904 | 1.2455 | 0.4440 | 0.032* | |
| H3B | 0.6273 | 1.0339 | 0.4091 | 0.032* | |
| H3C | 0.8039 | 1.0800 | 0.4113 | 0.032* | |
| C4 | 0.96146 (18) | 1.2376 (3) | 0.58689 (8) | 0.0156 (4) | |
| C5 | 1.00682 (18) | 1.1176 (3) | 0.69060 (7) | 0.0157 (4) | |
| H5 | 1.1055 | 1.1951 | 0.6871 | 0.019* | |
| C6 | 1.0336 (2) | 0.8900 (3) | 0.71759 (9) | 0.0210 (4) | |
| H6A | 1.1037 | 0.8054 | 0.6921 | 0.025* | |
| H6B | 0.9377 | 0.8076 | 0.7194 | 0.025* | |
| C7 | 1.0991 (2) | 0.9113 (3) | 0.78024 (8) | 0.0221 (4) | |
| H7A | 1.1116 | 0.7618 | 0.7977 | 0.026* | |
| H7B | 1.1994 | 0.9811 | 0.7779 | 0.026* | |
| C8 | 0.9984 (2) | 1.0501 (3) | 0.82063 (9) | 0.0235 (4) | |
| H8A | 0.9019 | 0.9725 | 0.8267 | 0.028* | |
| H8B | 1.0471 | 1.0689 | 0.8599 | 0.028* | |
| C9 | 0.9696 (2) | 1.2771 (3) | 0.79289 (9) | 0.0250 (4) | |
| H9A | 0.8988 | 1.3610 | 0.8182 | 0.030* | |
| H9B | 1.0648 | 1.3611 | 0.7912 | 0.030* | |
| C10 | 0.9048 (2) | 1.2561 (3) | 0.73033 (8) | 0.0212 (4) | |
| H10A | 0.8046 | 1.1858 | 0.7325 | 0.025* | |
| H10B | 0.8924 | 1.4055 | 0.7128 | 0.025* | |
| H1 | 0.602 (2) | 0.514 (3) | 0.5431 (12) | 0.040 (7)* | |
| H2 | 0.892 (2) | 1.275 (3) | 0.5035 (6) | 0.026 (6)* | |
| H3 | 0.888 (2) | 0.976 (2) | 0.6260 (11) | 0.029 (6)* |
| S1 | 0.0251 (3) | 0.0177 (3) | 0.0154 (3) | −0.00825 (16) | −0.0030 (2) | 0.00088 (18) |
| O1 | 0.0233 (6) | 0.0208 (7) | 0.0185 (7) | −0.0089 (5) | −0.0048 (5) | 0.0055 (6) |
| O2 | 0.0200 (6) | 0.0205 (7) | 0.0182 (7) | −0.0064 (5) | −0.0030 (5) | 0.0018 (5) |
| N1 | 0.0148 (7) | 0.0144 (7) | 0.0178 (8) | −0.0030 (5) | 0.0009 (6) | −0.0010 (6) |
| N2 | 0.0214 (7) | 0.0140 (7) | 0.0157 (8) | −0.0039 (6) | −0.0007 (6) | 0.0036 (6) |
| N3 | 0.0196 (7) | 0.0172 (7) | 0.0140 (8) | −0.0068 (6) | −0.0047 (6) | 0.0006 (6) |
| C1 | 0.0159 (8) | 0.0178 (9) | 0.0155 (9) | 0.0010 (7) | 0.0000 (7) | −0.0017 (7) |
| C2 | 0.0153 (8) | 0.0168 (9) | 0.0166 (9) | −0.0015 (6) | 0.0005 (7) | 0.0006 (7) |
| C3 | 0.0247 (9) | 0.0215 (9) | 0.0169 (9) | −0.0069 (7) | −0.0040 (7) | 0.0022 (8) |
| C4 | 0.0154 (8) | 0.0160 (8) | 0.0155 (8) | −0.0002 (6) | 0.0004 (7) | −0.0008 (7) |
| C5 | 0.0173 (8) | 0.0184 (9) | 0.0112 (8) | −0.0030 (7) | −0.0038 (6) | −0.0006 (7) |
| C6 | 0.0255 (9) | 0.0168 (9) | 0.0208 (9) | 0.0006 (7) | 0.0006 (8) | −0.0003 (8) |
| C7 | 0.0266 (9) | 0.0186 (9) | 0.0210 (10) | 0.0007 (7) | −0.0032 (8) | 0.0036 (8) |
| C8 | 0.0301 (10) | 0.0263 (10) | 0.0141 (9) | −0.0050 (8) | −0.0001 (8) | −0.0016 (8) |
| C9 | 0.0318 (10) | 0.0241 (10) | 0.0191 (9) | 0.0032 (8) | −0.0004 (8) | −0.0057 (8) |
| C10 | 0.0255 (9) | 0.0197 (9) | 0.0185 (9) | 0.0037 (7) | −0.0007 (8) | −0.0011 (8) |
| S1—C4 | 1.6774 (18) | C5—C10 | 1.525 (2) |
| O1—C1 | 1.315 (2) | C5—H5 | 1.0000 |
| O1—H1 | 0.845 (10) | C6—C7 | 1.530 (3) |
| O2—C1 | 1.225 (2) | C6—H6A | 0.9900 |
| N1—C2 | 1.275 (2) | C6—H6B | 0.9900 |
| N1—N2 | 1.363 (2) | C7—C8 | 1.528 (3) |
| N2—C4 | 1.370 (2) | C7—H7A | 0.9900 |
| N2—H2 | 0.892 (9) | C7—H7B | 0.9900 |
| N3—C4 | 1.330 (2) | C8—C9 | 1.527 (3) |
| N3—C5 | 1.458 (2) | C8—H8A | 0.9900 |
| N3—H3 | 0.870 (9) | C8—H8B | 0.9900 |
| C1—C2 | 1.491 (2) | C9—C10 | 1.525 (3) |
| C2—C3 | 1.488 (3) | C9—H9A | 0.9900 |
| C3—H3A | 0.9800 | C9—H9B | 0.9900 |
| C3—H3B | 0.9800 | C10—H10A | 0.9900 |
| C3—H3C | 0.9800 | C10—H10B | 0.9900 |
| C5—C6 | 1.520 (3) | ||
| C1—O1—H1 | 113.7 (18) | C5—C6—H6A | 109.5 |
| C2—N1—N2 | 119.52 (15) | C7—C6—H6A | 109.5 |
| N1—N2—C4 | 117.71 (14) | C5—C6—H6B | 109.5 |
| N1—N2—H2 | 121.1 (14) | C7—C6—H6B | 109.5 |
| C4—N2—H2 | 121.2 (14) | H6A—C6—H6B | 108.1 |
| C4—N3—C5 | 124.97 (14) | C8—C7—C6 | 111.63 (15) |
| C4—N3—H3 | 120.2 (16) | C8—C7—H7A | 109.3 |
| C5—N3—H3 | 114.8 (16) | C6—C7—H7A | 109.3 |
| O2—C1—O1 | 124.08 (15) | C8—C7—H7B | 109.3 |
| O2—C1—C2 | 120.71 (15) | C6—C7—H7B | 109.3 |
| O1—C1—C2 | 115.18 (15) | H7A—C7—H7B | 108.0 |
| N1—C2—C3 | 126.77 (15) | C9—C8—C7 | 110.38 (16) |
| N1—C2—C1 | 114.80 (15) | C9—C8—H8A | 109.6 |
| C3—C2—C1 | 118.38 (15) | C7—C8—H8A | 109.6 |
| C2—C3—H3A | 109.5 | C9—C8—H8B | 109.6 |
| C2—C3—H3B | 109.5 | C7—C8—H8B | 109.6 |
| H3A—C3—H3B | 109.5 | H8A—C8—H8B | 108.1 |
| C2—C3—H3C | 109.5 | C10—C9—C8 | 111.43 (15) |
| H3A—C3—H3C | 109.5 | C10—C9—H9A | 109.3 |
| H3B—C3—H3C | 109.5 | C8—C9—H9A | 109.3 |
| N3—C4—N2 | 115.34 (15) | C10—C9—H9B | 109.3 |
| N3—C4—S1 | 124.83 (14) | C8—C9—H9B | 109.3 |
| N2—C4—S1 | 119.82 (13) | H9A—C9—H9B | 108.0 |
| N3—C5—C6 | 109.71 (14) | C5—C10—C9 | 111.06 (14) |
| N3—C5—C10 | 111.03 (14) | C5—C10—H10A | 109.4 |
| C6—C5—C10 | 110.79 (15) | C9—C10—H10A | 109.4 |
| N3—C5—H5 | 108.4 | C5—C10—H10B | 109.4 |
| C6—C5—H5 | 108.4 | C9—C10—H10B | 109.4 |
| C10—C5—H5 | 108.4 | H10A—C10—H10B | 108.0 |
| C5—C6—C7 | 110.56 (15) | ||
| C2—N1—N2—C4 | 175.80 (15) | C4—N3—C5—C6 | −151.10 (16) |
| N2—N1—C2—C3 | −0.7 (3) | C4—N3—C5—C10 | 86.1 (2) |
| N2—N1—C2—C1 | −178.00 (14) | N3—C5—C6—C7 | −179.54 (14) |
| O2—C1—C2—N1 | 169.21 (15) | C10—C5—C6—C7 | −56.59 (19) |
| O1—C1—C2—N1 | −8.9 (2) | C5—C6—C7—C8 | 56.5 (2) |
| O2—C1—C2—C3 | −8.4 (2) | C6—C7—C8—C9 | −55.6 (2) |
| O1—C1—C2—C3 | 173.52 (15) | C7—C8—C9—C10 | 55.2 (2) |
| C5—N3—C4—N2 | −177.12 (15) | N3—C5—C10—C9 | 178.84 (14) |
| C5—N3—C4—S1 | 4.2 (2) | C6—C5—C10—C9 | 56.7 (2) |
| N1—N2—C4—N3 | 0.7 (2) | C8—C9—C10—C5 | −56.1 (2) |
| N1—N2—C4—S1 | 179.49 (12) |
| H··· | ||||
| N3—H3···N1 | 0.87 (1) | 2.20 (2) | 2.574 (2) | 106.(2) |
| O1—H1···O2i | 0.85 (1) | 1.80 (1) | 2.6416 (17) | 172 (3) |
| N2—H2···S1ii | 0.89 (1) | 2.65 (1) | 3.5384 (15) | 176.(2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯N1 | 0.87 (1) | 2.20 (2) | 2.574 (2) | 106 (2) |
| O1—H1⋯O2i | 0.85 (1) | 1.80 (1) | 2.6416 (17) | 172 (3) |
| N2—H2⋯S1ii | 0.89 (1) | 2.65 (1) | 3.5384 (15) | 176 (2) |
Symmetry codes: (i) ; (ii) .