Literature DB >> 21754473

3-(7-Meth-oxy-β-carbolin-1-yl)propionic acid monohydrate.

Dong-Mei Dai, Jia-Liang Zhong, Hui-Mei An, Jian-Wei Zou.   

Abstract

In the title compound, C(15)H(14)N(2)O(3)·H(2)O [systematic name: 3-(7-meth-oxy-9H-pyrido[3,4-b]indol-1-yl)propanoic acid monohydrate], the fused rings make dhedral angles of 0.4 (1), 1.1 (2) and 1.4 (2)°. In the crystal, the water mol-ecule is involved in the formation of three independent hydrogen-bonded chains via O-H⋯O and N-H⋯O hydrogen bonds, while the carb-oxy group forms an inter-molecular O-H⋯N hydrogen bond.

Entities:  

Year:  2011        PMID: 21754473      PMCID: PMC3089168          DOI: 10.1107/S160053681101350X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of the title compound, see: Kardono et al. (1991 ▶). For the preparation, see: Kardono et al. (1991 ▶). For its pharmacological activity, see: Kuo et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H14N2O3·H2O M = 288.30 Monoclinic, a = 4.5114 (1) Å b = 10.8637 (2) Å c = 28.0865 (3) Å β = 92.414 (1)° V = 1375.31 (4) Å3 Z = 4 Cu Kα radiation μ = 0.85 mm−1 T = 296 K 0.12 × 0.10 × 0.05 mm

Data collection

Bruker APEXII diffractometer 9119 measured reflections 2366 independent reflections 2048 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.116 S = 1.05 2366 reflections 201 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681101350X/mw2003sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681101350X/mw2003Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N2O3·H2OF(000) = 608
Mr = 288.30Dx = 1.392 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ynCell parameters from 3368 reflections
a = 4.5114 (1) Åθ = 3.2–67.6°
b = 10.8637 (2) ŵ = 0.85 mm1
c = 28.0865 (3) ÅT = 296 K
β = 92.414 (1)°Prism, colourless
V = 1375.31 (4) Å30.12 × 0.10 × 0.05 mm
Z = 4
Bruker APEXII diffractometer2048 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.022
graphiteθmax = 67.6°, θmin = 3.2°
Detector resolution: 0 pixels mm-1h = −4→5
φ and ω scansk = −12→12
9119 measured reflectionsl = −33→33
2366 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.116w = 1/[σ2(Fo2) + (0.0672P)2 + 0.3134P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.006
2366 reflectionsΔρmax = 0.49 e Å3
201 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0014 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0343 (3)0.45008 (14)0.16867 (5)0.0351 (3)
N20.0495 (3)0.32718 (11)0.16361 (5)0.0402 (3)
C30.2158 (4)0.27148 (15)0.13080 (6)0.0458 (4)
H3A0.21770.18600.12910.055*
C40.3807 (4)0.33780 (15)0.10014 (6)0.0438 (4)
H4A0.49250.29850.07760.053*
C50.7128 (4)0.57535 (16)0.04262 (6)0.0443 (4)
H5A0.78040.50500.02760.053*
C60.8037 (4)0.68936 (17)0.02872 (6)0.0487 (4)
H6A0.93240.69620.00390.058*
C70.7055 (4)0.79694 (16)0.05145 (6)0.0460 (4)
C80.5138 (4)0.79159 (15)0.08833 (6)0.0427 (4)
H8A0.45020.86240.10350.051*
C90.4200 (3)0.67511 (14)0.10178 (5)0.0374 (4)
C100.5163 (3)0.56590 (14)0.07978 (5)0.0381 (4)
C110.3771 (3)0.46622 (14)0.10355 (5)0.0370 (3)
C120.2008 (3)0.52071 (14)0.13862 (5)0.0350 (3)
N130.2299 (3)0.64599 (12)0.13699 (4)0.0381 (3)
H13A0.14370.69780.15500.046*
O140.8192 (3)0.90335 (12)0.03401 (5)0.0602 (4)
C150.7305 (6)1.01607 (19)0.05520 (8)0.0734 (7)
H15A0.82501.08370.03990.110*
H15B0.78771.01560.08850.110*
H15C0.51911.02480.05140.110*
C1'−0.1536 (3)0.50276 (13)0.20627 (5)0.0364 (4)
H1'A−0.31040.44490.21290.044*
H1'B−0.24580.57800.19440.044*
C2'0.0251 (4)0.53087 (15)0.25274 (6)0.0437 (4)
H2'A0.09660.45450.26700.052*
H2'B0.19570.58110.24580.052*
C3'−0.1657 (4)0.59823 (14)0.28756 (5)0.0416 (4)
O4'−0.2512 (4)0.54636 (12)0.32330 (4)0.0655 (4)
O5'−0.2315 (4)0.70783 (11)0.27682 (5)0.0618 (4)
H5'A−0.32680.73840.29810.25 (3)*
OW0.9592 (4)0.81052 (13)0.19395 (6)0.0690 (5)
HWA0.894 (5)0.789 (2)0.2205 (10)0.081 (8)*
HWB0.882 (5)0.883 (3)0.1889 (9)0.076 (7)*
U11U22U33U12U13U23
C10.0370 (8)0.0361 (8)0.0322 (7)−0.0001 (6)0.0022 (6)−0.0003 (6)
N20.0474 (8)0.0356 (7)0.0381 (7)0.0008 (5)0.0062 (6)−0.0012 (5)
C30.0572 (10)0.0358 (8)0.0450 (9)0.0031 (7)0.0082 (7)−0.0047 (6)
C40.0489 (9)0.0433 (9)0.0397 (8)0.0070 (7)0.0089 (7)−0.0061 (6)
C50.0431 (9)0.0531 (10)0.0374 (8)0.0014 (7)0.0097 (7)−0.0048 (7)
C60.0482 (10)0.0627 (11)0.0363 (8)−0.0041 (8)0.0146 (7)0.0008 (7)
C70.0487 (9)0.0521 (10)0.0375 (8)−0.0068 (7)0.0064 (7)0.0072 (7)
C80.0483 (9)0.0419 (9)0.0383 (8)−0.0002 (7)0.0084 (7)0.0012 (6)
C90.0384 (8)0.0422 (8)0.0318 (7)0.0006 (6)0.0049 (6)0.0006 (6)
C100.0376 (8)0.0443 (9)0.0326 (7)0.0012 (6)0.0039 (6)−0.0012 (6)
C110.0371 (8)0.0411 (8)0.0330 (7)0.0028 (6)0.0029 (6)−0.0026 (6)
C120.0362 (8)0.0372 (8)0.0316 (7)0.0019 (6)0.0033 (6)−0.0009 (6)
N130.0440 (7)0.0350 (7)0.0362 (6)0.0021 (5)0.0120 (5)−0.0008 (5)
O140.0749 (9)0.0543 (8)0.0530 (7)−0.0113 (6)0.0232 (6)0.0087 (6)
C150.1093 (18)0.0520 (12)0.0610 (12)−0.0196 (11)0.0274 (12)0.0019 (9)
C1'0.0378 (8)0.0352 (8)0.0367 (8)−0.0002 (6)0.0081 (6)0.0004 (6)
C2'0.0472 (9)0.0451 (9)0.0389 (8)0.0062 (7)0.0038 (7)−0.0023 (7)
C3'0.0501 (9)0.0387 (8)0.0365 (8)−0.0028 (6)0.0061 (7)−0.0041 (6)
O4'0.1062 (11)0.0451 (7)0.0477 (7)−0.0034 (7)0.0302 (7)−0.0001 (5)
O5'0.0916 (10)0.0433 (7)0.0528 (8)0.0155 (6)0.0297 (7)0.0040 (5)
OW0.1082 (13)0.0425 (7)0.0594 (9)0.0149 (7)0.0382 (8)0.0023 (6)
C1—N21.3447 (19)C10—C111.431 (2)
C1—C121.385 (2)C11—C121.421 (2)
C1—C1'1.4955 (19)C12—N131.3683 (19)
N2—C31.355 (2)N13—H13A0.8600
C3—C41.367 (2)O14—C151.426 (2)
C3—H3A0.9300C15—H15A0.9600
C4—C111.399 (2)C15—H15B0.9600
C4—H4A0.9300C15—H15C0.9600
C5—C61.367 (2)C1'—C2'1.535 (2)
C5—C101.401 (2)C1'—H1'A0.9700
C5—H5A0.9300C1'—H1'B0.9700
C6—C71.412 (2)C2'—C3'1.518 (2)
C6—H6A0.9300C2'—H2'A0.9700
C7—O141.364 (2)C2'—H2'B0.9700
C7—C81.378 (2)C3'—O4'1.228 (2)
C8—C91.392 (2)C3'—O5'1.261 (2)
C8—H8A0.9300O5'—H5'A0.8200
C9—N131.3728 (19)OW—HWA0.85 (3)
C9—C101.414 (2)OW—HWB0.87 (3)
N2—C1—C12117.01 (13)N13—C12—C1128.81 (13)
N2—C1—C1'119.18 (13)N13—C12—C11109.50 (13)
C12—C1—C1'123.80 (13)C1—C12—C11121.69 (14)
C1—N2—C3123.20 (13)C12—N13—C9108.49 (12)
N2—C3—C4121.64 (15)C12—N13—H13A125.8
N2—C3—H3A119.2C9—N13—H13A125.8
C4—C3—H3A119.2C7—O14—C15117.49 (14)
C3—C4—C11118.33 (14)O14—C15—H15A109.5
C3—C4—H4A120.8O14—C15—H15B109.5
C11—C4—H4A120.8H15A—C15—H15B109.5
C6—C5—C10119.07 (15)O14—C15—H15C109.5
C6—C5—H5A120.5H15A—C15—H15C109.5
C10—C5—H5A120.5H15B—C15—H15C109.5
C5—C6—C7121.16 (15)C1—C1'—C2'112.56 (12)
C5—C6—H6A119.4C1—C1'—H1'A109.1
C7—C6—H6A119.4C2'—C1'—H1'A109.1
O14—C7—C8124.26 (16)C1—C1'—H1'B109.1
O14—C7—C6114.16 (15)C2'—C1'—H1'B109.1
C8—C7—C6121.58 (15)H1'A—C1'—H1'B107.8
C7—C8—C9116.74 (15)C3'—C2'—C1'110.62 (13)
C7—C8—H8A121.6C3'—C2'—H2'A109.5
C9—C8—H8A121.6C1'—C2'—H2'A109.5
N13—C9—C8127.69 (14)C3'—C2'—H2'B109.5
N13—C9—C10109.52 (13)C1'—C2'—H2'B109.5
C8—C9—C10122.79 (14)H2'A—C2'—H2'B108.1
C5—C10—C9118.65 (14)O4'—C3'—O5'123.37 (15)
C5—C10—C11134.97 (15)O4'—C3'—C2'120.80 (15)
C9—C10—C11106.38 (13)O5'—C3'—C2'115.82 (14)
C4—C11—C12118.13 (14)C3'—O5'—H5'A109.5
C4—C11—C10135.75 (14)HWA—OW—HWB104 (2)
C12—C11—C10106.11 (13)
C12—C1—N2—C3−0.5 (2)C5—C10—C11—C12−179.98 (18)
C1'—C1—N2—C3−179.45 (15)C9—C10—C11—C120.48 (17)
C1—N2—C3—C4−0.2 (3)N2—C1—C12—N13−178.44 (14)
N2—C3—C4—C110.6 (3)C1'—C1—C12—N130.4 (2)
C10—C5—C6—C70.6 (3)N2—C1—C12—C110.8 (2)
C5—C6—C7—O14179.06 (15)C1'—C1—C12—C11179.69 (14)
C5—C6—C7—C8−0.3 (3)C4—C11—C12—N13178.96 (13)
O14—C7—C8—C9−179.74 (15)C10—C11—C12—N13−0.36 (17)
C6—C7—C8—C9−0.5 (3)C4—C11—C12—C1−0.4 (2)
C7—C8—C9—N13−179.63 (16)C10—C11—C12—C1−179.75 (14)
C7—C8—C9—C100.9 (2)C1—C12—N13—C9179.43 (15)
C6—C5—C10—C9−0.3 (2)C11—C12—N13—C90.09 (17)
C6—C5—C10—C11−179.79 (17)C8—C9—N13—C12−179.34 (16)
N13—C9—C10—C5179.93 (14)C10—C9—N13—C120.22 (17)
C8—C9—C10—C5−0.5 (2)C8—C7—O14—C15−0.7 (3)
N13—C9—C10—C11−0.44 (17)C6—C7—O14—C15−179.95 (18)
C8—C9—C10—C11179.14 (15)N2—C1—C1'—C2'95.18 (16)
C3—C4—C11—C12−0.3 (2)C12—C1—C1'—C2'−83.68 (18)
C3—C4—C11—C10178.79 (18)C1—C1'—C2'—C3'173.08 (13)
C5—C10—C11—C40.9 (3)C1'—C2'—C3'—O4'108.25 (18)
C9—C10—C11—C4−178.66 (18)C1'—C2'—C3'—O5'−70.68 (19)
D—H···AD—HH···AD···AD—H···A
N13—H13A···OWi0.861.862.7224 (18)180
O5'—H5'A···N2ii0.821.792.5965 (18)169
OW—HWA···O5'iii0.85 (3)1.92 (3)2.7514 (19)169 (2)
OW—HWB···O4'iv0.87 (3)1.89 (3)2.764 (2)175 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N13—H13A⋯OWi0.861.862.7224 (18)180
O5′—H5′A⋯N2ii0.821.792.5965 (18)169
OW—HWA⋯O5′iii0.85 (3)1.92 (3)2.7514 (19)169 (2)
OW—HWB⋯O4′iv0.87 (3)1.89 (3)2.764 (2)175 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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