Literature DB >> 21754466

2-(1-Ethyl-5-meth-oxy-1H-indol-3-yl)-N-isopropyl-2-oxoacetamide.

Xiao-Wei Tang, Tie-Liang Zhu, Hong Chen, Dan-Li Tian, Shao-Yu Shi.   

Abstract

In the title compound, C(16)H(20)N(2)O(3), the crystal packing is stabilized by weak π-π stacking inter-actions [centroid-centroid distances = 3.577 (9) and 3.693 (9) Å] and inter-molecular C-H⋯O and N-H⋯O hydrogen-bond inter-actions. The C atoms of the N-isopropyl group are disordered over two sets of sites with occupancies of 0.61(3) and 0.39(3).

Entities:  

Year:  2011        PMID: 21754466      PMCID: PMC3089210          DOI: 10.1107/S1600536811012815

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of the title compound and its derivatives, see: Souli et al. (2008 ▶); Chai et al. (2006 ▶); Radwan et al. (2007 ▶); Karthikeyan et al. (2009 ▶). For the preparation, see: Bacher et al. (2001 ▶). For bond lengths and angles in similar structures, see: Feng et al. (2008 ▶); Sonar et al. (2006 ▶).

Experimental

Crystal data

C16H20N2O3 M = 288.34 Orthorhombic, a = 11.593 (3) Å b = 9.182 (2) Å c = 27.796 (6) Å V = 2958.8 (11) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 113 K 0.30 × 0.24 × 0.10 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.974, T max = 0.991 25486 measured reflections 3527 independent reflections 3320 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.133 S = 1.12 3527 reflections 204 parameters 39 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012815/hg5020sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012815/hg5020Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20N2O3F(000) = 1232
Mr = 288.34Dx = 1.295 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 9914 reflections
a = 11.593 (3) Åθ = 1.9–27.9°
b = 9.182 (2) ŵ = 0.09 mm1
c = 27.796 (6) ÅT = 113 K
V = 2958.8 (11) Å3Prism, colorless
Z = 80.30 × 0.24 × 0.10 mm
Rigaku Saturn CCD area-detector diffractometer3527 independent reflections
Radiation source: rotating anode3320 reflections with I > 2σ(I)
multilayerRint = 0.053
Detector resolution: 14.63 pixels mm-1θmax = 27.9°, θmin = 1.5°
ω and φ scansh = −14→15
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −12→9
Tmin = 0.974, Tmax = 0.991l = −36→36
25486 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0661P)2 + 0.8297P] where P = (Fo2 + 2Fc2)/3
3527 reflections(Δ/σ)max = 0.001
204 parametersΔρmax = 0.32 e Å3
39 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.47198 (9)0.63365 (11)0.45512 (3)0.0265 (2)
O20.65875 (8)0.73051 (10)0.62010 (3)0.0242 (2)
O30.64406 (8)1.05760 (10)0.68489 (3)0.0233 (2)
N10.37396 (10)1.06105 (12)0.58694 (4)0.0201 (2)
N20.75248 (11)0.85420 (14)0.69650 (4)0.0247 (3)
C10.38287 (11)0.95977 (14)0.54960 (4)0.0188 (3)
C20.31491 (12)0.94441 (14)0.50881 (4)0.0208 (3)
H2A0.25111.00700.50310.025*
C30.34338 (11)0.83450 (15)0.47660 (5)0.0210 (3)
H3A0.29870.82110.44830.025*
C40.43820 (11)0.74299 (14)0.48577 (4)0.0200 (3)
C50.50502 (11)0.75732 (14)0.52708 (4)0.0198 (3)
H5A0.56810.69380.53300.024*
C60.47675 (11)0.86775 (14)0.55956 (4)0.0177 (3)
C70.52557 (11)0.91743 (14)0.60485 (4)0.0185 (3)
C80.45861 (11)1.03582 (14)0.61905 (4)0.0191 (3)
H8A0.47101.09110.64750.023*
C90.27776 (12)1.16154 (15)0.59397 (5)0.0244 (3)
H9A0.25641.20550.56270.029*
H9B0.30201.24110.61580.029*
C100.17353 (13)1.08439 (16)0.61518 (5)0.0284 (3)
H10A0.11051.15440.61940.043*
H10B0.19411.04250.64640.043*
H10C0.14871.00660.59340.043*
C110.40229 (13)0.60947 (16)0.41358 (5)0.0261 (3)
H11A0.43490.52950.39460.039*
H11B0.40030.69820.39400.039*
H11C0.32380.58410.42360.039*
C120.61865 (11)0.85066 (14)0.63061 (4)0.0180 (3)
C130.67303 (11)0.93253 (14)0.67372 (4)0.0189 (3)
C150.9362 (6)0.9639 (14)0.7211 (3)0.0447 (16)0.61 (3)
H15A0.92701.03230.69430.067*0.61 (3)
H15B0.98310.88090.71060.067*0.61 (3)
H15C0.97461.01320.74790.067*0.61 (3)
C140.81996 (14)0.91109 (16)0.73695 (5)0.0291 (3)0.61 (3)
H14A0.77770.99930.74850.035*0.61 (3)
C15'0.9489 (8)0.911 (2)0.7214 (5)0.048 (3)0.39 (3)
H15D0.95960.97790.69430.072*0.39 (3)
H15E0.97120.81220.71150.072*0.39 (3)
H15F0.99710.94180.74850.072*0.39 (3)
C14'0.81996 (14)0.91109 (16)0.73695 (5)0.0291 (3)0.39 (3)
H14B0.79351.01020.74700.035*0.39 (3)
C160.81764 (17)0.8043 (2)0.77817 (5)0.0408 (4)
H16A0.74050.79680.79070.049*
H16B0.84250.71080.76670.049*
H16C0.86850.83680.80270.049*
H2B0.7703 (15)0.765 (2)0.6858 (6)0.031 (5)*
U11U22U33U12U13U23
O10.0291 (5)0.0292 (5)0.0212 (5)0.0041 (4)−0.0062 (4)−0.0094 (4)
O20.0260 (5)0.0223 (5)0.0243 (5)0.0028 (4)−0.0032 (4)−0.0065 (4)
O30.0265 (5)0.0199 (5)0.0234 (5)−0.0003 (4)−0.0028 (4)−0.0050 (4)
N10.0251 (6)0.0172 (5)0.0181 (5)0.0007 (4)−0.0016 (4)−0.0008 (4)
N20.0303 (6)0.0212 (6)0.0227 (5)0.0025 (5)−0.0089 (5)−0.0065 (5)
C10.0229 (6)0.0165 (6)0.0171 (6)−0.0022 (5)0.0016 (5)0.0011 (5)
C20.0235 (7)0.0206 (6)0.0183 (6)0.0003 (5)−0.0015 (5)0.0026 (5)
C30.0232 (7)0.0220 (6)0.0178 (6)−0.0030 (5)−0.0025 (5)0.0010 (5)
C40.0228 (6)0.0196 (6)0.0176 (6)−0.0027 (5)0.0007 (5)−0.0018 (5)
C50.0199 (6)0.0206 (6)0.0189 (6)−0.0011 (5)−0.0002 (5)−0.0005 (5)
C60.0188 (6)0.0181 (6)0.0162 (5)−0.0046 (5)0.0009 (4)0.0006 (5)
C70.0208 (6)0.0188 (6)0.0157 (5)−0.0042 (5)0.0014 (4)−0.0003 (5)
C80.0226 (6)0.0181 (6)0.0165 (6)−0.0031 (5)0.0000 (5)0.0002 (5)
C90.0318 (7)0.0185 (6)0.0228 (6)0.0059 (5)−0.0032 (5)−0.0005 (5)
C100.0274 (7)0.0273 (7)0.0304 (7)0.0082 (6)−0.0016 (6)−0.0013 (6)
C110.0308 (7)0.0286 (7)0.0189 (6)−0.0015 (6)−0.0052 (5)−0.0062 (5)
C120.0189 (6)0.0197 (6)0.0154 (5)−0.0038 (5)0.0024 (4)−0.0011 (4)
C130.0204 (6)0.0208 (6)0.0154 (5)−0.0035 (5)0.0015 (5)−0.0013 (4)
C150.053 (2)0.049 (4)0.0325 (17)−0.027 (2)−0.0132 (15)0.002 (2)
C140.0383 (8)0.0248 (7)0.0240 (7)0.0002 (6)−0.0138 (6)−0.0066 (5)
C15'0.051 (4)0.059 (6)0.035 (3)−0.032 (4)−0.009 (3)−0.002 (4)
C14'0.0383 (8)0.0248 (7)0.0240 (7)0.0002 (6)−0.0138 (6)−0.0066 (5)
C160.0567 (11)0.0436 (10)0.0222 (7)−0.0091 (8)−0.0086 (7)−0.0035 (6)
O1—C41.3739 (15)C9—C101.520 (2)
O1—C111.4264 (16)C9—H9A0.9900
O2—C121.2323 (16)C9—H9B0.9900
O3—C131.2361 (16)C10—H10A0.9800
N1—C81.3465 (16)C10—H10B0.9800
N1—C11.3974 (16)C10—H10C0.9800
N1—C91.4606 (17)C11—H11A0.9800
N2—C131.3291 (18)C11—H11B0.9800
N2—C141.4659 (17)C11—H11C0.9800
N2—H2B0.894 (19)C12—C131.5487 (17)
C1—C21.3879 (18)C15—C141.499 (5)
C1—C61.4053 (18)C15—H15A0.9800
C2—C31.3888 (18)C15—H15B0.9800
C2—H2A0.9500C15—H15C0.9800
C3—C41.4069 (19)C14—C161.508 (2)
C3—H3A0.9500C14—H14A1.0000
C4—C51.3913 (18)C15'—H15D0.9800
C5—C61.3966 (17)C15'—H15E0.9800
C5—H5A0.9500C15'—H15F0.9800
C6—C71.4537 (17)C16—H16A0.9632
C7—C81.3928 (18)C16—H16B0.9595
C7—C121.4329 (18)C16—H16C0.9502
C8—H8A0.9500
C4—O1—C11117.02 (11)C9—C10—H10B109.5
C8—N1—C1108.90 (11)H10A—C10—H10B109.5
C8—N1—C9125.21 (11)C9—C10—H10C109.5
C1—N1—C9125.18 (11)H10A—C10—H10C109.5
C13—N2—C14122.84 (12)H10B—C10—H10C109.5
C13—N2—H2B119.8 (12)O1—C11—H11A109.5
C14—N2—H2B117.2 (12)O1—C11—H11B109.5
C2—C1—N1129.23 (12)H11A—C11—H11B109.5
C2—C1—C6122.64 (12)O1—C11—H11C109.5
N1—C1—C6108.12 (11)H11A—C11—H11C109.5
C1—C2—C3117.75 (12)H11B—C11—H11C109.5
C1—C2—H2A121.1O2—C12—C7123.27 (12)
C3—C2—H2A121.1O2—C12—C13117.68 (11)
C2—C3—C4120.19 (12)C7—C12—C13119.05 (11)
C2—C3—H3A119.9O3—C13—N2124.85 (12)
C4—C3—H3A119.9O3—C13—C12122.32 (12)
O1—C4—C5114.98 (12)N2—C13—C12112.83 (11)
O1—C4—C3123.14 (11)C14—C15—H15A109.5
C5—C4—C3121.88 (12)C14—C15—H15B109.5
C4—C5—C6118.12 (12)H15A—C15—H15B109.5
C4—C5—H5A120.9C14—C15—H15C109.5
C6—C5—H5A120.9H15A—C15—H15C109.5
C5—C6—C1119.40 (12)H15B—C15—H15C109.5
C5—C6—C7134.12 (12)N2—C14—C15111.7 (3)
C1—C6—C7106.47 (11)N2—C14—C16109.97 (12)
C8—C7—C12127.74 (11)C15—C14—C16116.8 (4)
C8—C7—C6105.86 (11)N2—C14—H14A105.9
C12—C7—C6126.28 (12)C15—C14—H14A105.9
N1—C8—C7110.65 (11)C16—C14—H14A105.9
N1—C8—H8A124.7H15D—C15'—H15E109.5
C7—C8—H8A124.7H15D—C15'—H15F109.5
N1—C9—C10111.38 (11)H15E—C15'—H15F109.5
N1—C9—H9A109.4C14—C16—H16A109.8
C10—C9—H9A109.4C14—C16—H16B109.0
N1—C9—H9B109.4H16A—C16—H16B109.6
C10—C9—H9B109.4C14—C16—H16C109.3
H9A—C9—H9B108.0H16A—C16—H16C109.7
C9—C10—H10A109.5H16B—C16—H16C109.5
C8—N1—C1—C2−179.77 (13)C5—C6—C7—C12−5.2 (2)
C9—N1—C1—C29.5 (2)C1—C6—C7—C12175.99 (12)
C8—N1—C1—C60.47 (14)C1—N1—C8—C7−0.64 (15)
C9—N1—C1—C6−170.26 (12)C9—N1—C8—C7170.09 (12)
N1—C1—C2—C3179.21 (12)C12—C7—C8—N1−175.62 (12)
C6—C1—C2—C3−1.05 (19)C6—C7—C8—N10.54 (14)
C1—C2—C3—C40.07 (19)C8—N1—C9—C10−92.41 (15)
C11—O1—C4—C5176.62 (12)C1—N1—C9—C1076.84 (16)
C11—O1—C4—C3−3.38 (19)C8—C7—C12—O2165.58 (13)
C2—C3—C4—O1−179.06 (12)C6—C7—C12—O2−9.8 (2)
C2—C3—C4—C50.9 (2)C8—C7—C12—C13−14.81 (19)
O1—C4—C5—C6179.04 (11)C6—C7—C12—C13169.78 (11)
C3—C4—C5—C6−0.96 (19)C14—N2—C13—O3−3.0 (2)
C4—C5—C6—C1−0.01 (18)C14—N2—C13—C12176.90 (12)
C4—C5—C6—C7−178.74 (13)O2—C12—C13—O3174.90 (12)
C2—C1—C6—C51.04 (19)C7—C12—C13—O3−4.74 (18)
N1—C1—C6—C5−179.18 (11)O2—C12—C13—N2−4.97 (17)
C2—C1—C6—C7−179.92 (12)C7—C12—C13—N2175.39 (12)
N1—C1—C6—C7−0.13 (14)C13—N2—C14—C15−97.9 (6)
C5—C6—C7—C8178.61 (14)C13—N2—C14—C16130.80 (15)
C1—C6—C7—C8−0.23 (13)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O2i0.952.543.4874 (17)172
N2—H2B···O3ii0.894 (19)2.149 (19)2.9933 (17)157.2 (16)
Cg1—···.Cg2iii..3.693 (9).
Cg2—···.Cg2iii..3.577 (9).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O2i0.952.543.4874 (17)172
N2—H2B⋯O3ii0.894 (19)2.149 (19)2.9933 (17)157.2 (16)

Symmetry codes: (i) ; (ii) .

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