Literature DB >> 21754465

5-Cyclo-hexyl-2-methyl-3-phenyl-sulfinyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(21)H(22)O(2)S, the cyclo-hexyl ring adopts a chair conformation. The phenyl ring makes a dihedral angle of 84.80 (4)° with the mean plane of the benzofuran fragment. In the crystal, mol-ecules are linked through weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21754465      PMCID: PMC3089290          DOI: 10.1107/S1600536811013705

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For structural studies of related 3-aryl­sulfinyl-2-methyl-1-benzofuran derivatives, see: Choi et al. (2010 ▶, 2011 ▶).

Experimental

Crystal data

C21H22O2S M = 338.45 Triclinic, a = 8.8532 (2) Å b = 10.2011 (2) Å c = 10.4752 (3) Å α = 90.734 (1)° β = 111.568 (1)° γ = 97.127 (1)° V = 871.25 (4) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 173 K 0.35 × 0.25 × 0.16 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.650, T max = 0.746 15560 measured reflections 4012 independent reflections 3481 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.07 4012 reflections 218 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811013705/zl2365sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013705/zl2365Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22O2SZ = 2
Mr = 338.45F(000) = 360
Triclinic, P1Dx = 1.290 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8532 (2) ÅCell parameters from 6502 reflections
b = 10.2011 (2) Åθ = 2.6–27.5°
c = 10.4752 (3) ŵ = 0.20 mm1
α = 90.734 (1)°T = 173 K
β = 111.568 (1)°Block, colourless
γ = 97.127 (1)°0.35 × 0.25 × 0.16 mm
V = 871.25 (4) Å3
Bruker SMART APEXII CCD diffractometer4012 independent reflections
Radiation source: rotating anode3481 reflections with I > 2σ(I)
graphite multilayerRint = 0.028
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 2.0°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −13→13
Tmin = 0.650, Tmax = 0.746l = −13→13
15560 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: difference Fourier map
wR(F2) = 0.106H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0528P)2 + 0.2372P] where P = (Fo2 + 2Fc2)/3
4012 reflections(Δ/σ)max < 0.001
218 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.33404 (4)0.01587 (3)0.18991 (3)0.02947 (11)
O10.52084 (12)0.32470 (10)0.04883 (10)0.0334 (2)
O20.45627 (13)−0.04998 (10)0.29798 (11)0.0388 (3)
C10.43524 (16)0.16549 (13)0.16271 (14)0.0279 (3)
C20.55010 (16)0.26393 (13)0.26444 (14)0.0264 (3)
C30.61465 (16)0.28037 (13)0.40727 (14)0.0265 (3)
H30.58370.21600.46110.032*
C40.72549 (16)0.39299 (13)0.46990 (14)0.0273 (3)
C50.76898 (17)0.48649 (14)0.38824 (15)0.0328 (3)
H50.84430.56310.43210.039*
C60.70636 (18)0.47162 (15)0.24594 (16)0.0347 (3)
H60.73660.53560.19140.042*
C70.59801 (17)0.35912 (14)0.18809 (14)0.0291 (3)
C80.42408 (17)0.20589 (14)0.03698 (14)0.0310 (3)
C90.79606 (17)0.41638 (13)0.62465 (14)0.0284 (3)
H90.88210.49580.64850.034*
C100.6659 (2)0.44576 (18)0.68066 (16)0.0416 (4)
H10A0.61770.52450.63810.050*
H10B0.57690.36980.65510.050*
C110.7379 (2)0.47091 (17)0.83653 (16)0.0423 (4)
H11A0.82000.55160.86170.051*
H11B0.64960.48630.86940.051*
C120.81830 (19)0.35505 (15)0.90597 (15)0.0368 (3)
H12A0.73390.27670.88920.044*
H12B0.86970.37631.00650.044*
C130.94782 (19)0.32296 (16)0.85200 (15)0.0364 (3)
H13A0.99250.24290.89410.044*
H13B1.03910.39720.87920.044*
C140.87798 (18)0.29943 (14)0.69594 (14)0.0315 (3)
H14A0.79650.21840.66950.038*
H14B0.96740.28500.66420.038*
C150.3295 (2)0.14926 (17)−0.10566 (15)0.0405 (4)
H15A0.27670.0596−0.10310.061*
H15B0.40390.1459−0.15520.061*
H15C0.24560.2049−0.15280.061*
C160.20788 (16)0.08189 (12)0.26836 (14)0.0268 (3)
C170.06675 (19)0.12795 (16)0.18436 (16)0.0387 (3)
H170.04040.12840.08790.046*
C18−0.0358 (2)0.17341 (18)0.2422 (2)0.0471 (4)
H18−0.13300.20580.18540.057*
C190.0022 (2)0.17188 (18)0.3815 (2)0.0483 (4)
H19−0.06850.20350.42090.058*
C200.1428 (2)0.12449 (18)0.46414 (17)0.0462 (4)
H200.16860.12360.56050.055*
C210.24659 (19)0.07815 (15)0.40774 (15)0.0344 (3)
H210.34280.04440.46440.041*
U11U22U33U12U13U23
S10.0328 (2)0.02712 (18)0.02898 (19)0.00368 (13)0.01233 (15)−0.00168 (13)
O10.0350 (5)0.0415 (6)0.0285 (5)0.0062 (4)0.0171 (4)0.0062 (4)
O20.0405 (6)0.0351 (5)0.0433 (6)0.0142 (5)0.0154 (5)0.0074 (5)
C10.0279 (7)0.0319 (7)0.0263 (6)0.0064 (5)0.0123 (5)0.0004 (5)
C20.0245 (6)0.0276 (6)0.0300 (7)0.0064 (5)0.0126 (5)0.0031 (5)
C30.0264 (6)0.0267 (6)0.0279 (7)0.0047 (5)0.0114 (5)0.0039 (5)
C40.0238 (6)0.0269 (6)0.0314 (7)0.0062 (5)0.0097 (5)0.0031 (5)
C50.0287 (7)0.0294 (7)0.0402 (8)0.0010 (5)0.0133 (6)0.0041 (6)
C60.0337 (7)0.0353 (7)0.0395 (8)0.0030 (6)0.0189 (6)0.0108 (6)
C70.0276 (7)0.0355 (7)0.0284 (7)0.0076 (5)0.0142 (6)0.0055 (5)
C80.0304 (7)0.0377 (7)0.0295 (7)0.0091 (6)0.0152 (6)0.0016 (6)
C90.0261 (6)0.0260 (6)0.0300 (7)0.0015 (5)0.0076 (5)−0.0001 (5)
C100.0355 (8)0.0534 (9)0.0348 (8)0.0191 (7)0.0080 (7)−0.0060 (7)
C110.0402 (9)0.0513 (9)0.0352 (8)0.0160 (7)0.0111 (7)−0.0082 (7)
C120.0377 (8)0.0427 (8)0.0318 (7)0.0024 (6)0.0162 (6)−0.0022 (6)
C130.0371 (8)0.0437 (8)0.0305 (7)0.0133 (7)0.0127 (6)0.0059 (6)
C140.0343 (7)0.0335 (7)0.0301 (7)0.0099 (6)0.0143 (6)0.0040 (5)
C150.0449 (9)0.0518 (9)0.0279 (7)0.0110 (7)0.0159 (7)−0.0011 (6)
C160.0288 (7)0.0236 (6)0.0288 (7)0.0018 (5)0.0122 (6)0.0021 (5)
C170.0371 (8)0.0458 (9)0.0342 (8)0.0116 (7)0.0122 (7)0.0108 (6)
C180.0377 (9)0.0493 (9)0.0593 (11)0.0173 (7)0.0199 (8)0.0125 (8)
C190.0471 (10)0.0476 (9)0.0611 (11)0.0077 (8)0.0326 (9)−0.0047 (8)
C200.0530 (10)0.0547 (10)0.0352 (8)0.0020 (8)0.0234 (8)−0.0054 (7)
C210.0338 (7)0.0393 (8)0.0282 (7)0.0028 (6)0.0099 (6)0.0009 (6)
S1—O21.4843 (11)C11—H11A0.9900
S1—C11.7529 (14)C11—H11B0.9900
S1—C161.7955 (14)C12—C131.519 (2)
O1—C81.3706 (17)C12—H12A0.9900
O1—C71.3829 (17)C12—H12B0.9900
C1—C81.3574 (19)C13—C141.5239 (19)
C1—C21.4494 (18)C13—H13A0.9900
C2—C71.3891 (19)C13—H13B0.9900
C2—C31.3908 (18)C14—H14A0.9900
C3—C41.3931 (18)C14—H14B0.9900
C3—H30.9500C15—H15A0.9800
C4—C51.4006 (19)C15—H15B0.9800
C4—C91.5112 (19)C15—H15C0.9800
C5—C61.385 (2)C16—C211.374 (2)
C5—H50.9500C16—C171.380 (2)
C6—C71.373 (2)C17—C181.382 (2)
C6—H60.9500C17—H170.9500
C8—C151.485 (2)C18—C191.372 (3)
C9—C101.530 (2)C18—H180.9500
C9—C141.5317 (19)C19—C201.379 (3)
C9—H91.0000C19—H190.9500
C10—C111.524 (2)C20—C211.385 (2)
C10—H10A0.9900C20—H200.9500
C10—H10B0.9900C21—H210.9500
C11—C121.511 (2)
O2—S1—C1107.74 (6)C10—C11—H11B109.4
O2—S1—C16106.99 (6)H11A—C11—H11B108.0
C1—S1—C1698.62 (6)C11—C12—C13111.07 (13)
C8—O1—C7106.49 (10)C11—C12—H12A109.4
C8—C1—C2107.37 (12)C13—C12—H12A109.4
C8—C1—S1124.25 (11)C11—C12—H12B109.4
C2—C1—S1128.29 (10)C13—C12—H12B109.4
C7—C2—C3119.49 (12)H12A—C12—H12B108.0
C7—C2—C1104.63 (12)C12—C13—C14111.68 (12)
C3—C2—C1135.87 (12)C12—C13—H13A109.3
C2—C3—C4118.76 (12)C14—C13—H13A109.3
C2—C3—H3120.6C12—C13—H13B109.3
C4—C3—H3120.6C14—C13—H13B109.3
C3—C4—C5119.53 (13)H13A—C13—H13B107.9
C3—C4—C9120.59 (12)C13—C14—C9111.88 (12)
C5—C4—C9119.87 (12)C13—C14—H14A109.2
C6—C5—C4122.53 (13)C9—C14—H14A109.2
C6—C5—H5118.7C13—C14—H14B109.2
C4—C5—H5118.7C9—C14—H14B109.2
C7—C6—C5116.21 (13)H14A—C14—H14B107.9
C7—C6—H6121.9C8—C15—H15A109.5
C5—C6—H6121.9C8—C15—H15B109.5
C6—C7—O1125.85 (12)H15A—C15—H15B109.5
C6—C7—C2123.48 (13)C8—C15—H15C109.5
O1—C7—C2110.67 (12)H15A—C15—H15C109.5
C1—C8—O1110.83 (12)H15B—C15—H15C109.5
C1—C8—C15133.47 (14)C21—C16—C17121.28 (13)
O1—C8—C15115.70 (12)C21—C16—S1120.21 (11)
C4—C9—C10111.77 (11)C17—C16—S1118.37 (11)
C4—C9—C14112.05 (11)C16—C17—C18119.21 (15)
C10—C9—C14109.62 (12)C16—C17—H17120.4
C4—C9—H9107.7C18—C17—H17120.4
C10—C9—H9107.7C19—C18—C17120.21 (16)
C14—C9—H9107.7C19—C18—H18119.9
C11—C10—C9111.62 (13)C17—C18—H18119.9
C11—C10—H10A109.3C18—C19—C20120.03 (15)
C9—C10—H10A109.3C18—C19—H19120.0
C11—C10—H10B109.3C20—C19—H19120.0
C9—C10—H10B109.3C19—C20—C21120.49 (16)
H10A—C10—H10B108.0C19—C20—H20119.8
C12—C11—C10111.23 (13)C21—C20—H20119.8
C12—C11—H11A109.4C16—C21—C20118.77 (15)
C10—C11—H11A109.4C16—C21—H21120.6
C12—C11—H11B109.4C20—C21—H21120.6
O2—S1—C1—C8131.22 (12)C7—O1—C8—C11.01 (15)
C16—S1—C1—C8−117.76 (13)C7—O1—C8—C15−179.63 (12)
O2—S1—C1—C2−45.06 (13)C3—C4—C9—C10−68.63 (16)
C16—S1—C1—C265.96 (13)C5—C4—C9—C10110.04 (15)
C8—C1—C2—C70.77 (15)C3—C4—C9—C1454.86 (16)
S1—C1—C2—C7177.55 (11)C5—C4—C9—C14−126.47 (14)
C8—C1—C2—C3−179.30 (15)C4—C9—C10—C11−179.32 (13)
S1—C1—C2—C3−2.5 (2)C14—C9—C10—C1155.83 (17)
C7—C2—C3—C40.36 (19)C9—C10—C11—C12−56.99 (19)
C1—C2—C3—C4−179.57 (14)C10—C11—C12—C1355.67 (18)
C2—C3—C4—C50.07 (19)C11—C12—C13—C14−54.82 (17)
C2—C3—C4—C9178.73 (11)C12—C13—C14—C955.03 (17)
C3—C4—C5—C6−0.3 (2)C4—C9—C14—C13−179.56 (12)
C9—C4—C5—C6−178.94 (13)C10—C9—C14—C13−54.87 (16)
C4—C5—C6—C70.0 (2)O2—S1—C16—C216.99 (13)
C5—C6—C7—O1179.83 (12)C1—S1—C16—C21−104.63 (12)
C5—C6—C7—C20.4 (2)O2—S1—C16—C17−168.86 (11)
C8—O1—C7—C6−179.94 (14)C1—S1—C16—C1779.52 (12)
C8—O1—C7—C2−0.49 (15)C21—C16—C17—C181.2 (2)
C3—C2—C7—C6−0.6 (2)S1—C16—C17—C18177.02 (13)
C1—C2—C7—C6179.30 (13)C16—C17—C18—C19−0.4 (3)
C3—C2—C7—O1179.89 (11)C17—C18—C19—C20−0.2 (3)
C1—C2—C7—O1−0.16 (14)C18—C19—C20—C210.0 (3)
C2—C1—C8—O1−1.12 (15)C17—C16—C21—C20−1.4 (2)
S1—C1—C8—O1−178.06 (9)S1—C16—C21—C20−177.15 (12)
C2—C1—C8—C15179.67 (15)C19—C20—C21—C160.8 (2)
S1—C1—C8—C152.7 (2)
D—H···AD—HH···AD···AD—H···A
C15—H15B···O2i0.982.523.4516 (19)159
C21—H21···O2ii0.952.473.2793 (18)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15B⋯O2i0.982.523.4516 (19)159
C21—H21⋯O2ii0.952.473.2793 (18)144

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

6.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

7.  3-(4-Chloro-phenyl-sulfin-yl)-2,5-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

8.  5-Cyclo-hexyl-3-(4-fluoro-phenyl-sulfin-yl)-2-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-02
  8 in total
  2 in total

1.  3-(4-Bromo-phenyl-sulfin-yl)-5-cyclo-hexyl-2-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-21

2.  5-Cyclo-hexyl-3-(3-fluoro-phenyl-sulfin-yl)-2-methyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08
  2 in total

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