| Literature DB >> 21754451 |
Ya-Pan Wu1, Long Tang, Feng Fu, Qi-Rui Liu.
Abstract
In the title compound, C(9)H(9)N(5)S, the pyridyl and triazine rings make a dihedral angle of 4.8 (2)°. In the crystal, adjacent mol-ecules are bridged by an N-H⋯N hydrogen bond, forming a helical chain running along the b axis.Entities:
Year: 2011 PMID: 21754451 PMCID: PMC3089193 DOI: 10.1107/S1600536811013171
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9N5S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | θ = 1.6–25.0° |
| µ = 0.30 mm−1 | |
| Prism, colorless | |
| 0.29 × 0.08 × 0.06 mm | |
| Bruker SMART diffractometer | 1083 independent reflections |
| Radiation source: fine-focus sealed tube | 877 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 5053 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1083 reflections | (Δ/σ)max = 0.001 |
| 136 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 1.1007 (9) | 0.9098 (3) | 0.16248 (11) | 0.0339 (8) | |
| N2 | 1.0449 (9) | 1.1369 (3) | 0.13727 (11) | 0.0343 (9) | |
| N3 | 0.8318 (10) | 0.9659 (3) | 0.08066 (11) | 0.0351 (8) | |
| N4 | 0.7949 (11) | 1.1828 (3) | 0.05641 (13) | 0.0478 (11) | |
| H4A | 0.8298 | 1.2657 | 0.0620 | 0.057* | |
| H4B | 0.6971 | 1.1574 | 0.0275 | 0.057* | |
| N5 | 0.8411 (12) | 0.4703 (3) | 0.07660 (13) | 0.0495 (10) | |
| S1 | 1.3341 (3) | 1.07833 (10) | 0.23066 (4) | 0.0426 (3) | |
| C1 | 1.1382 (10) | 1.0410 (4) | 0.17022 (13) | 0.0329 (9) | |
| C2 | 0.8925 (11) | 1.0938 (4) | 0.09250 (14) | 0.0339 (10) | |
| C3 | 0.9465 (10) | 0.8803 (3) | 0.11698 (14) | 0.0311 (10) | |
| C4 | 1.3782 (12) | 1.2539 (4) | 0.22817 (16) | 0.0508 (12) | |
| H4C | 1.4850 | 1.2846 | 0.2603 | 0.076* | |
| H4D | 1.1559 | 1.2938 | 0.2247 | 0.076* | |
| H4E | 1.5175 | 1.2779 | 0.1982 | 0.076* | |
| C5 | 0.9850 (14) | 0.5082 (4) | 0.12212 (17) | 0.0489 (13) | |
| H5 | 1.0671 | 0.4430 | 0.1449 | 0.059* | |
| C6 | 1.0198 (13) | 0.6385 (4) | 0.13752 (15) | 0.0432 (12) | |
| H6 | 1.1208 | 0.6594 | 0.1699 | 0.052* | |
| C7 | 0.9028 (10) | 0.7375 (3) | 0.10425 (13) | 0.0309 (9) | |
| C8 | 0.7467 (11) | 0.6986 (4) | 0.05768 (15) | 0.0377 (11) | |
| H8 | 0.6563 | 0.7616 | 0.0346 | 0.045* | |
| C9 | 0.7248 (12) | 0.5655 (4) | 0.04524 (16) | 0.0460 (12) | |
| H9 | 0.6230 | 0.5417 | 0.0132 | 0.055* |
| N1 | 0.040 (2) | 0.0343 (19) | 0.0279 (17) | −0.0042 (17) | −0.0046 (16) | −0.0005 (13) |
| N2 | 0.041 (2) | 0.0336 (17) | 0.0289 (18) | −0.0003 (17) | 0.0012 (17) | −0.0010 (14) |
| N3 | 0.049 (2) | 0.0304 (17) | 0.0264 (17) | 0.0020 (18) | −0.0011 (18) | 0.0006 (13) |
| N4 | 0.076 (3) | 0.0345 (17) | 0.0325 (19) | −0.003 (2) | −0.011 (2) | 0.0013 (15) |
| N5 | 0.066 (3) | 0.0368 (18) | 0.046 (2) | −0.004 (2) | −0.010 (2) | 0.0011 (16) |
| S1 | 0.0492 (6) | 0.0466 (6) | 0.0318 (5) | −0.0024 (6) | −0.0092 (5) | −0.0037 (4) |
| C1 | 0.027 (2) | 0.043 (2) | 0.028 (2) | −0.002 (2) | 0.001 (2) | −0.0035 (17) |
| C2 | 0.040 (3) | 0.038 (2) | 0.0235 (19) | −0.001 (2) | 0.0020 (19) | 0.0013 (18) |
| C3 | 0.035 (2) | 0.034 (2) | 0.025 (2) | −0.0040 (19) | 0.0058 (19) | −0.0016 (16) |
| C4 | 0.056 (3) | 0.053 (3) | 0.044 (2) | −0.002 (3) | −0.010 (3) | −0.015 (2) |
| C5 | 0.059 (3) | 0.042 (3) | 0.046 (3) | 0.002 (2) | −0.009 (3) | 0.0127 (19) |
| C6 | 0.055 (3) | 0.038 (2) | 0.036 (2) | −0.005 (2) | −0.013 (2) | 0.0021 (19) |
| C7 | 0.031 (2) | 0.037 (2) | 0.0238 (19) | −0.002 (2) | 0.0028 (19) | 0.0000 (17) |
| C8 | 0.044 (3) | 0.037 (2) | 0.032 (2) | 0.000 (2) | −0.002 (2) | 0.0039 (16) |
| C9 | 0.060 (3) | 0.041 (2) | 0.037 (2) | −0.009 (3) | −0.005 (2) | −0.0029 (19) |
| N1—C3 | 1.327 (5) | C3—C7 | 1.488 (5) |
| N1—C1 | 1.349 (4) | C4—H4C | 0.9600 |
| N2—C1 | 1.326 (4) | C4—H4D | 0.9600 |
| N2—C2 | 1.345 (4) | C4—H4E | 0.9600 |
| N3—C3 | 1.336 (5) | C5—C6 | 1.379 (5) |
| N3—C2 | 1.348 (4) | C5—H5 | 0.9300 |
| N4—C2 | 1.333 (5) | C6—C7 | 1.383 (5) |
| N4—H4A | 0.8600 | C6—H6 | 0.9300 |
| N4—H4B | 0.8600 | C7—C8 | 1.377 (5) |
| N5—C9 | 1.325 (5) | C8—C9 | 1.384 (5) |
| N5—C5 | 1.331 (5) | C8—H8 | 0.9300 |
| S1—C1 | 1.742 (4) | C9—H9 | 0.9300 |
| S1—C4 | 1.785 (4) | ||
| C3—N1—C1 | 113.3 (3) | H4C—C4—H4D | 109.5 |
| C1—N2—C2 | 114.1 (3) | S1—C4—H4E | 109.5 |
| C3—N3—C2 | 114.4 (3) | H4C—C4—H4E | 109.5 |
| C2—N4—H4A | 120.0 | H4D—C4—H4E | 109.5 |
| C2—N4—H4B | 120.0 | N5—C5—C6 | 123.9 (4) |
| H4A—N4—H4B | 120.0 | N5—C5—H5 | 118.0 |
| C9—N5—C5 | 116.5 (3) | C6—C5—H5 | 118.0 |
| C1—S1—C4 | 103.12 (19) | C5—C6—C7 | 119.3 (4) |
| N2—C1—N1 | 126.8 (3) | C5—C6—H6 | 120.3 |
| N2—C1—S1 | 120.5 (3) | C7—C6—H6 | 120.3 |
| N1—C1—S1 | 112.7 (3) | C8—C7—C6 | 117.0 (4) |
| N4—C2—N2 | 118.5 (3) | C8—C7—C3 | 120.7 (3) |
| N4—C2—N3 | 116.6 (3) | C6—C7—C3 | 122.3 (3) |
| N2—C2—N3 | 124.9 (3) | C7—C8—C9 | 119.8 (4) |
| N1—C3—N3 | 126.5 (3) | C7—C8—H8 | 120.1 |
| N1—C3—C7 | 117.1 (3) | C9—C8—H8 | 120.1 |
| N3—C3—C7 | 116.3 (3) | N5—C9—C8 | 123.4 (4) |
| S1—C4—H4C | 109.5 | N5—C9—H9 | 118.3 |
| S1—C4—H4D | 109.5 | C8—C9—H9 | 118.3 |
| C2—N2—C1—N1 | 1.3 (6) | C2—N3—C3—C7 | −176.7 (4) |
| C2—N2—C1—S1 | −179.1 (3) | C9—N5—C5—C6 | −0.5 (8) |
| C3—N1—C1—N2 | −1.5 (6) | N5—C5—C6—C7 | −0.5 (8) |
| C3—N1—C1—S1 | 178.9 (3) | C5—C6—C7—C8 | 1.9 (7) |
| C4—S1—C1—N2 | −3.7 (4) | C5—C6—C7—C3 | −177.0 (4) |
| C4—S1—C1—N1 | 176.0 (3) | N1—C3—C7—C8 | −179.7 (4) |
| C1—N2—C2—N4 | −178.8 (4) | N3—C3—C7—C8 | −1.0 (6) |
| C1—N2—C2—N3 | 0.6 (6) | N1—C3—C7—C6 | −0.8 (6) |
| C3—N3—C2—N4 | 177.4 (4) | N3—C3—C7—C6 | 177.9 (4) |
| C3—N3—C2—N2 | −2.0 (6) | C6—C7—C8—C9 | −2.4 (6) |
| C1—N1—C3—N3 | −0.3 (6) | C3—C7—C8—C9 | 176.6 (4) |
| C1—N1—C3—C7 | 178.3 (3) | C5—N5—C9—C8 | 0.0 (7) |
| C2—N3—C3—N1 | 1.9 (6) | C7—C8—C9—N5 | 1.5 (7) |
| H··· | ||||
| N4—H4A···N5i | 0.86 | 2.10 | 2.956 (4) | 172 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4 | 0.86 | 2.10 | 2.956 (4) | 172 |
Symmetry code: (i) .