Literature DB >> 21754451

4-Methyl-sulfanyl-6-(4-pyrid-yl)-1,3,5-triazin-2-amine.

Ya-Pan Wu1, Long Tang, Feng Fu, Qi-Rui Liu.   

Abstract

In the title compound, C(9)H(9)N(5)S, the pyridyl and triazine rings make a dihedral angle of 4.8 (2)°. In the crystal, adjacent mol-ecules are bridged by an N-H⋯N hydrogen bond, forming a helical chain running along the b axis.

Entities:  

Year:  2011        PMID: 21754451      PMCID: PMC3089193          DOI: 10.1107/S1600536811013171

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of N-heterocycles in the synthesis of solid-state architectures, see: Janczak et al. (2003 ▶). For silmilar triazine derivatives, see: Ma & Che (2003 ▶).

Experimental

Crystal data

C9H9N5S M = 219.27 Orthorhombic, a = 3.9002 (11) Å b = 10.111 (3) Å c = 25.143 (7) Å V = 991.4 (5) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 298 K 0.29 × 0.08 × 0.06 mm

Data collection

Bruker SMART diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.919, T max = 0.982 5053 measured reflections 1083 independent reflections 877 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.096 S = 1.06 1083 reflections 136 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811013171/ng5131sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013171/ng5131Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N5SF(000) = 456
Mr = 219.27Dx = 1.469 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abθ = 1.6–25.0°
a = 3.9002 (11) ŵ = 0.30 mm1
b = 10.111 (3) ÅT = 298 K
c = 25.143 (7) ÅPrism, colorless
V = 991.4 (5) Å30.29 × 0.08 × 0.06 mm
Z = 4
Bruker SMART diffractometer1083 independent reflections
Radiation source: fine-focus sealed tube877 reflections with I > 2σ(I)
graphiteRint = 0.055
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −4→4
Tmin = 0.919, Tmax = 0.982k = −10→12
5053 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0478P)2 + 0.2208P] where P = (Fo2 + 2Fc2)/3
1083 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N11.1007 (9)0.9098 (3)0.16248 (11)0.0339 (8)
N21.0449 (9)1.1369 (3)0.13727 (11)0.0343 (9)
N30.8318 (10)0.9659 (3)0.08066 (11)0.0351 (8)
N40.7949 (11)1.1828 (3)0.05641 (13)0.0478 (11)
H4A0.82981.26570.06200.057*
H4B0.69711.15740.02750.057*
N50.8411 (12)0.4703 (3)0.07660 (13)0.0495 (10)
S11.3341 (3)1.07833 (10)0.23066 (4)0.0426 (3)
C11.1382 (10)1.0410 (4)0.17022 (13)0.0329 (9)
C20.8925 (11)1.0938 (4)0.09250 (14)0.0339 (10)
C30.9465 (10)0.8803 (3)0.11698 (14)0.0311 (10)
C41.3782 (12)1.2539 (4)0.22817 (16)0.0508 (12)
H4C1.48501.28460.26030.076*
H4D1.15591.29380.22470.076*
H4E1.51751.27790.19820.076*
C50.9850 (14)0.5082 (4)0.12212 (17)0.0489 (13)
H51.06710.44300.14490.059*
C61.0198 (13)0.6385 (4)0.13752 (15)0.0432 (12)
H61.12080.65940.16990.052*
C70.9028 (10)0.7375 (3)0.10425 (13)0.0309 (9)
C80.7467 (11)0.6986 (4)0.05768 (15)0.0377 (11)
H80.65630.76160.03460.045*
C90.7248 (12)0.5655 (4)0.04524 (16)0.0460 (12)
H90.62300.54170.01320.055*
U11U22U33U12U13U23
N10.040 (2)0.0343 (19)0.0279 (17)−0.0042 (17)−0.0046 (16)−0.0005 (13)
N20.041 (2)0.0336 (17)0.0289 (18)−0.0003 (17)0.0012 (17)−0.0010 (14)
N30.049 (2)0.0304 (17)0.0264 (17)0.0020 (18)−0.0011 (18)0.0006 (13)
N40.076 (3)0.0345 (17)0.0325 (19)−0.003 (2)−0.011 (2)0.0013 (15)
N50.066 (3)0.0368 (18)0.046 (2)−0.004 (2)−0.010 (2)0.0011 (16)
S10.0492 (6)0.0466 (6)0.0318 (5)−0.0024 (6)−0.0092 (5)−0.0037 (4)
C10.027 (2)0.043 (2)0.028 (2)−0.002 (2)0.001 (2)−0.0035 (17)
C20.040 (3)0.038 (2)0.0235 (19)−0.001 (2)0.0020 (19)0.0013 (18)
C30.035 (2)0.034 (2)0.025 (2)−0.0040 (19)0.0058 (19)−0.0016 (16)
C40.056 (3)0.053 (3)0.044 (2)−0.002 (3)−0.010 (3)−0.015 (2)
C50.059 (3)0.042 (3)0.046 (3)0.002 (2)−0.009 (3)0.0127 (19)
C60.055 (3)0.038 (2)0.036 (2)−0.005 (2)−0.013 (2)0.0021 (19)
C70.031 (2)0.037 (2)0.0238 (19)−0.002 (2)0.0028 (19)0.0000 (17)
C80.044 (3)0.037 (2)0.032 (2)0.000 (2)−0.002 (2)0.0039 (16)
C90.060 (3)0.041 (2)0.037 (2)−0.009 (3)−0.005 (2)−0.0029 (19)
N1—C31.327 (5)C3—C71.488 (5)
N1—C11.349 (4)C4—H4C0.9600
N2—C11.326 (4)C4—H4D0.9600
N2—C21.345 (4)C4—H4E0.9600
N3—C31.336 (5)C5—C61.379 (5)
N3—C21.348 (4)C5—H50.9300
N4—C21.333 (5)C6—C71.383 (5)
N4—H4A0.8600C6—H60.9300
N4—H4B0.8600C7—C81.377 (5)
N5—C91.325 (5)C8—C91.384 (5)
N5—C51.331 (5)C8—H80.9300
S1—C11.742 (4)C9—H90.9300
S1—C41.785 (4)
C3—N1—C1113.3 (3)H4C—C4—H4D109.5
C1—N2—C2114.1 (3)S1—C4—H4E109.5
C3—N3—C2114.4 (3)H4C—C4—H4E109.5
C2—N4—H4A120.0H4D—C4—H4E109.5
C2—N4—H4B120.0N5—C5—C6123.9 (4)
H4A—N4—H4B120.0N5—C5—H5118.0
C9—N5—C5116.5 (3)C6—C5—H5118.0
C1—S1—C4103.12 (19)C5—C6—C7119.3 (4)
N2—C1—N1126.8 (3)C5—C6—H6120.3
N2—C1—S1120.5 (3)C7—C6—H6120.3
N1—C1—S1112.7 (3)C8—C7—C6117.0 (4)
N4—C2—N2118.5 (3)C8—C7—C3120.7 (3)
N4—C2—N3116.6 (3)C6—C7—C3122.3 (3)
N2—C2—N3124.9 (3)C7—C8—C9119.8 (4)
N1—C3—N3126.5 (3)C7—C8—H8120.1
N1—C3—C7117.1 (3)C9—C8—H8120.1
N3—C3—C7116.3 (3)N5—C9—C8123.4 (4)
S1—C4—H4C109.5N5—C9—H9118.3
S1—C4—H4D109.5C8—C9—H9118.3
C2—N2—C1—N11.3 (6)C2—N3—C3—C7−176.7 (4)
C2—N2—C1—S1−179.1 (3)C9—N5—C5—C6−0.5 (8)
C3—N1—C1—N2−1.5 (6)N5—C5—C6—C7−0.5 (8)
C3—N1—C1—S1178.9 (3)C5—C6—C7—C81.9 (7)
C4—S1—C1—N2−3.7 (4)C5—C6—C7—C3−177.0 (4)
C4—S1—C1—N1176.0 (3)N1—C3—C7—C8−179.7 (4)
C1—N2—C2—N4−178.8 (4)N3—C3—C7—C8−1.0 (6)
C1—N2—C2—N30.6 (6)N1—C3—C7—C6−0.8 (6)
C3—N3—C2—N4177.4 (4)N3—C3—C7—C6177.9 (4)
C3—N3—C2—N2−2.0 (6)C6—C7—C8—C9−2.4 (6)
C1—N1—C3—N3−0.3 (6)C3—C7—C8—C9176.6 (4)
C1—N1—C3—C7178.3 (3)C5—N5—C9—C80.0 (7)
C2—N3—C3—N11.9 (6)C7—C8—C9—N51.5 (7)
D—H···AD—HH···AD···AD—H···A
N4—H4A···N5i0.862.102.956 (4)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯N5i0.862.102.956 (4)172

Symmetry code: (i) .

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