Literature DB >> 21754431

(3R,4S)-3,4-Isopropylidenedioxy-5-phenylsulfonylmethyl-3,4-dihydro-2H-pyrrole 1-oxide.

Mari Fe Flores, P Garcia, Narciso M Garrido, Francisca Sanz, David Diez.   

Abstract

The title compound, C(14)H(17)NO(5)S, was prepared by oxidation of (2R,3S,4R)-2-phenyl-sulfonyl-methyl-1-hy-droxy-3,4-iso-pro-pyl-idene-dioxy-pyrrolidine. Its crystal structure confirms unequivocally its configuration. Two inter-molecular C-H⋯O inter-actions help to establish the packing.

Entities:  

Year:  2011        PMID: 21754431      PMCID: PMC3089343          DOI: 10.1107/S1600536811010737

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation, see: Flores et al. (2010 ▶). For the standard oxidation of hydroxyl­amines to nitro­nes with manganese dioxide, see: Cicchi et al. (2001 ▶). For background to organocatalysts, see: Berkessel & Groger (2005 ▶); Macmillan (2008 ▶). For analogues of the organocatalyst l-proline, see: Andrey et al. (2004 ▶); Cobb et al. (2004 ▶); Tanaka et al. (2004 ▶); Wang et al. (2005 ▶).

Experimental

Crystal data

C14H17NO5S M = 311.35 Orthorhombic, a = 5.6424 (2) Å b = 15.5592 (7) Å c = 16.9097 (8) Å V = 1484.52 (11) Å3 Z = 4 Cu Kα radiation μ = 2.14 mm−1 T = 298 K 0.10 × 0.08 × 0.06 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.815, T max = 0.880 8018 measured reflections 2487 independent reflections 2159 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.084 S = 1.06 2487 reflections 192 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), Flack parameter: 0.06 (2) Data collection: APEX2 (Bruker 2006 ▶); cell refinement: SAINT (Bruker 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010737/bt5495sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010737/bt5495Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17NO5SF(000) = 656
Mr = 311.35Dx = 1.393 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 1922 reflections
a = 5.6424 (2) Åθ = 3.9–55.3°
b = 15.5592 (7) ŵ = 2.14 mm1
c = 16.9097 (8) ÅT = 298 K
V = 1484.52 (11) Å3Prismatic, colourless
Z = 40.10 × 0.08 × 0.06 mm
Bruker APEXII CCD area-detector diffractometer2487 independent reflections
Radiation source: fine-focus sealed tube2159 reflections with I > 2σ(I)
graphiteRint = 0.030
phi and ω scansθmax = 67.5°, θmin = 3.9°
Absorption correction: multi-scan (SADABS; Bruker, 2006)h = −6→5
Tmin = 0.815, Tmax = 0.880k = −18→15
8018 measured reflectionsl = −18→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.0335P)2 + 0.1514P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2487 reflectionsΔρmax = 0.14 e Å3
192 parametersΔρmin = −0.15 e Å3
0 restraintsAbsolute structure: Flack (1983), 907 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.06 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.89076 (11)0.02630 (4)0.36234 (4)0.05643 (18)
O10.8060 (3)0.16596 (13)0.57625 (11)0.0614 (5)
O20.9722 (5)0.10911 (14)0.68680 (13)0.0894 (7)
O31.3072 (4)−0.05736 (13)0.53437 (13)0.0813 (6)
O40.9927 (4)0.05353 (13)0.28901 (11)0.0739 (6)
O50.6496 (3)0.04808 (13)0.37996 (14)0.0738 (6)
N11.1197 (4)−0.01709 (14)0.55737 (13)0.0619 (6)
C10.8010 (4)0.07555 (18)0.56728 (16)0.0587 (7)
H10.64700.05570.54770.070*
C20.9998 (4)0.04067 (16)0.51895 (15)0.0521 (6)
C31.0217 (6)−0.03387 (19)0.63738 (19)0.0805 (8)
H3A1.1460−0.03410.67700.097*
H3B0.9384−0.08840.63900.097*
C40.8538 (5)0.0402 (2)0.64986 (17)0.0729 (8)
H40.70990.02310.67820.088*
C50.9533 (4)0.18574 (16)0.64286 (17)0.0549 (6)
C61.1963 (5)0.2119 (3)0.6143 (2)0.0922 (11)
H6A1.29180.22890.65860.138*
H6B1.18190.25920.57820.138*
H6C1.26980.16420.58780.138*
C70.8367 (6)0.2541 (2)0.6910 (2)0.0864 (10)
H7A0.68570.23380.70940.130*
H7B0.81430.30450.65910.130*
H7C0.93510.26800.73550.130*
C81.0714 (4)0.06909 (17)0.43949 (14)0.0520 (6)
H8A1.23450.05200.43040.062*
H8B1.06480.13130.43740.062*
C90.9226 (4)−0.08537 (16)0.37208 (15)0.0523 (6)
C101.1198 (5)−0.12509 (19)0.33956 (16)0.0653 (7)
H101.2338−0.09330.31270.078*
C111.1429 (5)−0.2125 (2)0.3480 (2)0.0754 (9)
H111.2732−0.24000.32570.090*
C120.9786 (6)−0.26022 (19)0.38851 (18)0.0705 (8)
H120.9981−0.31930.39410.085*
C130.7836 (5)−0.21963 (19)0.42093 (19)0.0703 (8)
H130.6707−0.25160.44810.084*
C140.7551 (4)−0.13237 (18)0.41327 (17)0.0609 (7)
H140.6245−0.10510.43560.073*
U11U22U33U12U13U23
S10.0530 (3)0.0692 (4)0.0471 (3)−0.0058 (3)−0.0062 (3)0.0034 (3)
O10.0476 (9)0.0863 (13)0.0503 (11)0.0057 (8)−0.0094 (9)0.0002 (9)
O20.1365 (19)0.0753 (12)0.0565 (12)−0.0047 (13)−0.0356 (13)0.0064 (10)
O30.0906 (14)0.0759 (13)0.0774 (15)0.0194 (11)0.0000 (12)0.0008 (11)
O40.0948 (13)0.0849 (13)0.0421 (11)−0.0213 (11)−0.0065 (11)0.0110 (9)
O50.0455 (9)0.0819 (13)0.0939 (16)0.0066 (8)−0.0109 (10)−0.0017 (11)
N10.0731 (13)0.0599 (12)0.0528 (13)−0.0067 (12)0.0011 (13)0.0040 (11)
C10.0440 (13)0.0819 (18)0.0503 (16)−0.0131 (12)0.0022 (12)−0.0013 (14)
C20.0494 (12)0.0638 (15)0.0431 (13)−0.0127 (12)−0.0020 (12)0.0028 (12)
C30.116 (2)0.0678 (17)0.0573 (17)−0.0182 (17)0.0092 (19)0.0161 (16)
C40.0835 (18)0.087 (2)0.0485 (15)−0.0228 (16)0.0111 (16)0.0062 (15)
C50.0470 (12)0.0704 (15)0.0471 (14)0.0057 (11)−0.0093 (13)0.0006 (13)
C60.0543 (16)0.135 (3)0.087 (3)−0.0178 (17)−0.0027 (17)−0.017 (2)
C70.077 (2)0.117 (3)0.065 (2)0.0361 (18)−0.0159 (17)−0.0214 (19)
C80.0454 (13)0.0655 (14)0.0451 (14)−0.0080 (11)0.0019 (12)0.0038 (11)
C90.0469 (13)0.0682 (14)0.0418 (14)−0.0061 (11)0.0018 (12)−0.0013 (11)
C100.0524 (14)0.0823 (18)0.0612 (17)−0.0056 (14)0.0119 (15)0.0050 (14)
C110.0662 (17)0.0833 (19)0.077 (2)0.0129 (15)0.0121 (18)−0.0042 (16)
C120.0748 (18)0.0687 (16)0.068 (2)−0.0018 (14)−0.0025 (17)0.0036 (15)
C130.0686 (17)0.080 (2)0.062 (2)−0.0203 (15)0.0052 (17)0.0047 (15)
C140.0471 (13)0.0774 (18)0.0581 (18)−0.0093 (13)0.0092 (14)−0.0027 (14)
S1—O41.4310 (19)C5—C61.510 (4)
S1—O51.4334 (18)C6—H6A0.9600
S1—C91.755 (3)C6—H6B0.9600
S1—C81.784 (2)C6—H6C0.9600
O1—C11.415 (3)C7—H7A0.9600
O1—C51.433 (3)C7—H7B0.9600
O2—C51.409 (3)C7—H7C0.9600
O2—C41.409 (4)C8—H8A0.9700
O3—N11.290 (3)C8—H8B0.9700
N1—C21.299 (3)C9—C141.383 (3)
N1—C31.485 (4)C9—C101.387 (3)
C1—C21.490 (4)C10—C111.374 (4)
C1—C41.530 (4)C10—H100.9300
C1—H10.9800C11—C121.371 (4)
C2—C81.471 (3)C11—H110.9300
C3—C41.506 (5)C12—C131.382 (4)
C3—H3A0.9700C12—H120.9300
C3—H3B0.9700C13—C141.373 (4)
C4—H40.9800C13—H130.9300
C5—C71.492 (4)C14—H140.9300
O4—S1—O5119.46 (14)C7—C5—C6112.5 (3)
O4—S1—C9109.47 (13)C5—C6—H6A109.5
O5—S1—C9108.16 (12)C5—C6—H6B109.5
O4—S1—C8107.06 (11)H6A—C6—H6B109.5
O5—S1—C8107.58 (13)C5—C6—H6C109.5
C9—S1—C8104.02 (12)H6A—C6—H6C109.5
C1—O1—C5108.01 (19)H6B—C6—H6C109.5
C5—O2—C4112.0 (2)C5—C7—H7A109.5
O3—N1—C2127.8 (2)C5—C7—H7B109.5
O3—N1—C3119.7 (2)H7A—C7—H7B109.5
C2—N1—C3112.5 (2)C5—C7—H7C109.5
O1—C1—C2113.9 (2)H7A—C7—H7C109.5
O1—C1—C4104.8 (2)H7B—C7—H7C109.5
C2—C1—C4102.9 (2)C2—C8—S1113.50 (17)
O1—C1—H1111.6C2—C8—H8A108.9
C2—C1—H1111.6S1—C8—H8A108.9
C4—C1—H1111.6C2—C8—H8B108.9
N1—C2—C8121.4 (2)S1—C8—H8B108.9
N1—C2—C1111.7 (2)H8A—C8—H8B107.7
C8—C2—C1126.8 (2)C14—C9—C10120.8 (3)
N1—C3—C4103.1 (2)C14—C9—S1120.1 (2)
N1—C3—H3A111.1C10—C9—S1119.10 (19)
C4—C3—H3A111.1C11—C10—C9118.4 (3)
N1—C3—H3B111.1C11—C10—H10120.8
C4—C3—H3B111.1C9—C10—H10120.8
H3A—C3—H3B109.1C12—C11—C10121.6 (3)
O2—C4—C3110.3 (3)C12—C11—H11119.2
O2—C4—C1102.9 (2)C10—C11—H11119.2
C3—C4—C1105.6 (2)C11—C12—C13119.3 (3)
O2—C4—H4112.5C11—C12—H12120.4
C3—C4—H4112.5C13—C12—H12120.4
C1—C4—H4112.5C14—C13—C12120.5 (3)
O2—C5—O1106.07 (19)C14—C13—H13119.8
O2—C5—C7110.4 (3)C12—C13—H13119.8
O1—C5—C7109.1 (2)C13—C14—C9119.4 (3)
O2—C5—C6109.1 (2)C13—C14—H14120.3
O1—C5—C6109.4 (2)C9—C14—H14120.3
D—H···AD—HH···AD···AD—H···A
C4—H4···O4i0.982.503.389 (2)151
C12—H12···O3ii0.932.513.270 (4)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O4i0.982.503.389 (2)151
C12—H12⋯O3ii0.932.513.270 (4)139

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The advent and development of organocatalysis.

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Journal:  Nature       Date:  2008-09-18       Impact factor: 49.962

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Authors:  Alexander J A Cobb; Deborah A Longbottom; David M Shaw; Steven V Ley
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1.  Crystal structure of (2R*,3aR*)-2-phenyl-sulfonyl-2,3,3a,4,5,6-hexa-hydro-pyrrolo-[1,2-b]isoxazole.

Authors:  Yaiza Hernández; Isidro Marcos; Narciso M Garrido; Francisca Sanz; David Diez
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-01

2.  (2R,3S,4R)-3,4-Isopropyl-idenedi-oxy-2-(phenyl-sulfonyl-meth-yl)pyrrolidin-1-ol.

Authors:  Mari Fe Flores; Pilar Garcia; Narciso M Garrido; Francisca Sanz; David Diez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28
  2 in total

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