Literature DB >> 21754415

3-[2-(6-Bromo-2-phenyl-3H-imidazo[4,5-b]pyridin-3-yl)eth-yl]-1,3-oxazolidin-2-one.

Younes Ouzidan, Jerry P Jasinski, Raymond J Butcher, James A Golen, El Mokhtar Essassi, Lahcen El Ammari.   

Abstract

In the title mol-ecule, C(17)H(15)BrN(4)O(2), the fused-ring system is essentially planar, the largest deviation from the mean plane being 0.015 (2) Å, and forms dihedral angles of 37.8 (2) and 35.5 (2)° with the phenyl and oxazolidine rings, respectively. The conformation adopted by the mol-ecule is stabilized by an intra-molecular π⋯π inter-action [centroid-centroid distance = 3.855(2) Å] between oxazolidine and phenyl rings. The crystal packing features inter-molecular C-H⋯N and C-H⋯O inter-actions.

Entities:  

Year:  2011        PMID: 21754415      PMCID: PMC3089183          DOI: 10.1107/S1600536811012669

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal chemistry of oxazolidin-2-ones and their application in asymmetric synthesis, see: Diekema & Jones (2000 ▶); Mukhtar & Wright (2004 ▶); Evans et al. (1993 ▶); Matsunaga et al. (2005 ▶). For similar compounds with an imidazo[4,5-b]pyridine group, see: Ouzidan et al. (2010a ▶,b ▶).

Experimental

Crystal data

C17H15BrN4O2 M = 387.24 Monoclinic, a = 11.3553 (6) Å b = 11.5915 (5) Å c = 12.2542 (8) Å β = 98.685 (6)° V = 1594.46 (15) Å3 Z = 4 Mo Kα radiation μ = 2.60 mm−1 T = 170 K 0.22 × 0.20 × 0.18 mm

Data collection

Oxford Diffraction XcaliburE Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.599, T max = 0.652 7850 measured reflections 3791 independent reflections 2839 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.091 S = 1.03 3791 reflections 218 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811012669/gk2362sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012669/gk2362Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15BrN4O2F(000) = 784
Mr = 387.24Dx = 1.613 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3008 reflections
a = 11.3553 (6) Åθ = 3.5–32.3°
b = 11.5915 (5) ŵ = 2.60 mm1
c = 12.2542 (8) ÅT = 170 K
β = 98.685 (6)°Block, colourless
V = 1594.46 (15) Å30.22 × 0.20 × 0.18 mm
Z = 4
Oxford Diffraction XcaliburE Gemini diffractometer3791 independent reflections
Radiation source: Enhance (Mo) X-ray Source2839 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 16.1500 pixels mm-1θmax = 27.9°, θmin = 3.5°
ω scansh = −9→14
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −15→6
Tmin = 0.599, Tmax = 0.652l = −15→16
7850 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0373P)2 + 0.4211P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3791 reflectionsΔρmax = 0.50 e Å3
218 parametersΔρmin = −0.35 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0047 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.83535 (2)0.94591 (2)0.34797 (3)0.05968 (13)
O10.28122 (17)0.80153 (15)0.18265 (18)0.0643 (6)
O20.09323 (15)0.76454 (14)0.20646 (16)0.0521 (5)
N10.61867 (17)0.66117 (16)0.33964 (18)0.0444 (5)
N20.42350 (16)0.82558 (14)0.48010 (15)0.0331 (4)
N30.43353 (16)0.64555 (14)0.41210 (15)0.0341 (4)
N40.22330 (16)0.62233 (15)0.23253 (16)0.0380 (4)
C10.53419 (19)0.70349 (17)0.39157 (18)0.0336 (5)
C20.7057 (2)0.7361 (2)0.3310 (2)0.0476 (6)
H2A0.76940.71190.29430.057*
C30.7086 (2)0.84809 (19)0.3727 (2)0.0386 (5)
C40.61915 (19)0.89053 (18)0.42593 (18)0.0347 (5)
H4A0.62040.96680.45440.042*
C50.52729 (19)0.81425 (17)0.43494 (18)0.0313 (5)
C60.37023 (19)0.72409 (17)0.46453 (17)0.0314 (5)
C70.3943 (2)0.53819 (17)0.3543 (2)0.0397 (5)
H7A0.33780.49770.39520.048*
H7B0.46400.48720.35260.048*
C80.3343 (2)0.56137 (19)0.2369 (2)0.0427 (6)
H8A0.38880.60720.19810.051*
H8B0.31950.48700.19750.051*
C90.2077 (2)0.7339 (2)0.2053 (2)0.0422 (6)
C100.0290 (2)0.6685 (2)0.2428 (2)0.0473 (6)
H10A−0.04440.65330.19000.057*
H10B0.00660.68410.31640.057*
C110.1133 (2)0.5666 (2)0.2479 (2)0.0494 (6)
H11A0.12070.52700.32010.059*
H11B0.08730.51040.18820.059*
C120.25728 (19)0.69848 (18)0.50368 (17)0.0331 (5)
C130.2346 (2)0.5929 (2)0.5501 (2)0.0491 (6)
H13A0.29270.53330.55590.059*
C140.1272 (3)0.5745 (2)0.5880 (2)0.0582 (7)
H14A0.11160.50190.61880.070*
C150.0434 (2)0.6598 (3)0.5815 (2)0.0572 (7)
H15A−0.03040.64620.60690.069*
C160.0661 (2)0.7651 (2)0.5383 (2)0.0511 (6)
H16A0.00850.82490.53500.061*
C170.1725 (2)0.7849 (2)0.49934 (19)0.0407 (5)
H17A0.18750.85810.46950.049*
U11U22U33U12U13U23
Br10.04820 (18)0.05086 (18)0.0845 (3)−0.01581 (12)0.02468 (15)−0.00566 (14)
O10.0624 (12)0.0360 (9)0.0993 (16)−0.0107 (9)0.0285 (11)0.0095 (10)
O20.0458 (10)0.0376 (9)0.0730 (13)0.0032 (8)0.0094 (9)0.0075 (8)
N10.0396 (11)0.0275 (9)0.0690 (14)0.0033 (8)0.0182 (10)−0.0068 (9)
N20.0361 (10)0.0268 (9)0.0377 (10)−0.0006 (8)0.0093 (8)−0.0039 (7)
N30.0339 (10)0.0215 (8)0.0468 (11)−0.0001 (7)0.0063 (8)−0.0022 (8)
N40.0378 (11)0.0287 (9)0.0472 (12)−0.0055 (8)0.0061 (9)0.0012 (8)
C10.0321 (11)0.0243 (10)0.0440 (13)0.0016 (9)0.0038 (9)0.0011 (9)
C20.0388 (13)0.0367 (12)0.0708 (18)0.0047 (11)0.0200 (12)−0.0055 (12)
C30.0328 (12)0.0334 (11)0.0498 (14)−0.0021 (9)0.0071 (10)0.0032 (10)
C40.0375 (12)0.0246 (10)0.0412 (13)−0.0019 (9)0.0033 (9)−0.0021 (9)
C50.0345 (11)0.0241 (10)0.0349 (12)0.0018 (8)0.0039 (9)0.0000 (8)
C60.0333 (11)0.0263 (10)0.0342 (12)0.0024 (9)0.0034 (9)0.0015 (9)
C70.0419 (13)0.0184 (10)0.0593 (16)0.0013 (9)0.0094 (11)−0.0036 (9)
C80.0491 (14)0.0297 (11)0.0517 (15)−0.0020 (10)0.0154 (11)−0.0099 (10)
C90.0505 (15)0.0314 (12)0.0450 (14)−0.0046 (11)0.0084 (11)−0.0009 (10)
C100.0428 (14)0.0531 (15)0.0459 (15)−0.0086 (12)0.0063 (11)0.0027 (12)
C110.0421 (14)0.0404 (14)0.0644 (18)−0.0132 (11)0.0037 (12)0.0041 (12)
C120.0341 (11)0.0336 (11)0.0319 (12)−0.0022 (9)0.0057 (9)−0.0017 (9)
C130.0509 (15)0.0385 (13)0.0595 (17)0.0001 (11)0.0140 (12)0.0078 (12)
C140.0626 (18)0.0510 (16)0.0657 (19)−0.0159 (14)0.0248 (15)0.0080 (13)
C150.0475 (16)0.0679 (18)0.0607 (18)−0.0146 (14)0.0228 (13)−0.0063 (14)
C160.0446 (14)0.0599 (16)0.0514 (16)0.0073 (13)0.0152 (12)−0.0050 (13)
C170.0453 (13)0.0374 (12)0.0418 (13)0.0017 (10)0.0139 (10)−0.0003 (10)
Br1—C31.892 (2)C7—C81.520 (4)
O1—C91.208 (3)C7—H7A0.9900
O2—C91.349 (3)C7—H7B0.9900
O2—C101.438 (3)C8—H8A0.9900
N1—C11.323 (3)C8—H8B0.9900
N1—C21.332 (3)C10—C111.516 (4)
N2—C61.323 (3)C10—H10A0.9900
N2—C51.382 (3)C10—H10B0.9900
N3—C61.378 (3)C11—H11A0.9900
N3—C11.381 (3)C11—H11B0.9900
N3—C71.467 (3)C12—C171.385 (3)
N4—C91.340 (3)C12—C131.390 (3)
N4—C81.439 (3)C13—C141.385 (4)
N4—C111.443 (3)C13—H13A0.9500
C1—C51.396 (3)C14—C151.366 (4)
C2—C31.393 (3)C14—H14A0.9500
C2—H2A0.9500C15—C161.370 (4)
C3—C41.378 (3)C15—H15A0.9500
C4—C51.385 (3)C16—C171.383 (3)
C4—H4A0.9500C16—H16A0.9500
C6—C121.466 (3)C17—H17A0.9500
C9—O2—C10109.50 (18)N4—C8—H8B109.0
C1—N1—C2113.39 (19)C7—C8—H8B109.0
C6—N2—C5104.87 (17)H8A—C8—H8B107.8
C6—N3—C1105.55 (16)O1—C9—N4127.8 (2)
C6—N3—C7130.08 (18)O1—C9—O2122.1 (2)
C1—N3—C7121.58 (18)N4—C9—O2110.1 (2)
C9—N4—C8124.4 (2)O2—C10—C11105.60 (19)
C9—N4—C11112.3 (2)O2—C10—H10A110.6
C8—N4—C11123.08 (18)C11—C10—H10A110.6
N1—C1—N3125.98 (19)O2—C10—H10B110.6
N1—C1—C5127.6 (2)C11—C10—H10B110.6
N3—C1—C5106.39 (18)H10A—C10—H10B108.8
N1—C2—C3123.7 (2)N4—C11—C10101.52 (18)
N1—C2—H2A118.1N4—C11—H11A111.5
C3—C2—H2A118.1C10—C11—H11A111.5
C4—C3—C2121.8 (2)N4—C11—H11B111.5
C4—C3—Br1119.65 (16)C10—C11—H11B111.5
C2—C3—Br1118.43 (17)H11A—C11—H11B109.3
C3—C4—C5115.34 (19)C17—C12—C13118.8 (2)
C3—C4—H4A122.3C17—C12—C6118.60 (19)
C5—C4—H4A122.3C13—C12—C6122.5 (2)
N2—C5—C4132.04 (18)C14—C13—C12119.9 (2)
N2—C5—C1109.89 (18)C14—C13—H13A120.0
C4—C5—C1118.07 (19)C12—C13—H13A120.0
N2—C6—N3113.29 (18)C15—C14—C13120.7 (2)
N2—C6—C12122.43 (19)C15—C14—H14A119.7
N3—C6—C12124.24 (18)C13—C14—H14A119.7
N3—C7—C8111.52 (17)C14—C15—C16119.8 (2)
N3—C7—H7A109.3C14—C15—H15A120.1
C8—C7—H7A109.3C16—C15—H15A120.1
N3—C7—H7B109.3C15—C16—C17120.4 (2)
C8—C7—H7B109.3C15—C16—H16A119.8
H7A—C7—H7B108.0C17—C16—H16A119.8
N4—C8—C7112.74 (19)C16—C17—C12120.3 (2)
N4—C8—H8A109.0C16—C17—H17A119.8
C7—C8—H8A109.0C12—C17—H17A119.8
C2—N1—C1—N3179.8 (2)C1—N3—C7—C8−76.4 (3)
C2—N1—C1—C50.7 (4)C9—N4—C8—C7106.1 (3)
C6—N3—C1—N1−178.2 (2)C11—N4—C8—C7−79.5 (3)
C7—N3—C1—N1−15.3 (3)N3—C7—C8—N4−66.7 (2)
C6—N3—C1—C51.1 (2)C8—N4—C9—O1−1.6 (4)
C7—N3—C1—C5163.93 (19)C11—N4—C9—O1−176.5 (3)
C1—N1—C2—C30.3 (4)C8—N4—C9—O2178.6 (2)
N1—C2—C3—C4−0.7 (4)C11—N4—C9—O23.7 (3)
N1—C2—C3—Br1−177.4 (2)C10—O2—C9—O1−176.5 (2)
C2—C3—C4—C50.2 (3)C10—O2—C9—N43.3 (3)
Br1—C3—C4—C5176.72 (16)C9—O2—C10—C11−8.5 (3)
C6—N2—C5—C4179.9 (2)C9—N4—C11—C10−8.5 (3)
C6—N2—C5—C10.3 (2)C8—N4—C11—C10176.5 (2)
C3—C4—C5—N2−178.8 (2)O2—C10—C11—N49.8 (3)
C3—C4—C5—C10.8 (3)N2—C6—C12—C1736.7 (3)
N1—C1—C5—N2178.3 (2)N3—C6—C12—C17−145.7 (2)
N3—C1—C5—N2−0.9 (2)N2—C6—C12—C13−139.9 (2)
N1—C1—C5—C4−1.3 (4)N3—C6—C12—C1337.7 (3)
N3—C1—C5—C4179.46 (19)C17—C12—C13—C141.9 (4)
C5—N2—C6—N30.4 (2)C6—C12—C13—C14178.5 (2)
C5—N2—C6—C12178.28 (19)C12—C13—C14—C15−0.8 (4)
C1—N3—C6—N2−1.0 (2)C13—C14—C15—C16−0.7 (5)
C7—N3—C6—N2−161.8 (2)C14—C15—C16—C171.1 (4)
C1—N3—C6—C12−178.78 (19)C15—C16—C17—C120.0 (4)
C7—N3—C6—C1220.4 (3)C13—C12—C17—C16−1.5 (4)
C6—N3—C7—C881.7 (3)C6—C12—C17—C16−178.2 (2)
D—H···AD—HH···AD···AD—H···A
C4—H4A···N2i0.952.613.544 (3)168
C10—H10A···N2ii0.992.553.261 (3)128
C15—H15A···O1iii0.952.533.423 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4A⋯N2i0.952.613.544 (3)168
C10—H10A⋯N2ii0.992.553.261 (3)128
C15—H15A⋯O1iii0.952.533.423 (3)156

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

Review 1.  Streptogramins, oxazolidinones, and other inhibitors of bacterial protein synthesis.

Authors:  Tariq A Mukhtar; Gerard D Wright
Journal:  Chem Rev       Date:  2005-02       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  4-Benzyl-6-bromo-2-phenyl-4H-imidazo[4,5-b]pyridine.

Authors:  Y Ouzidan; S Obbade; F Capet; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

Review 4.  Oxazolidinones: a review.

Authors:  D I Diekema; R N Jones
Journal:  Drugs       Date:  2000-01       Impact factor: 11.431

5.  3-Benzyl-6-bromo-2-(2-fur-yl)-3H-imidazo[4,5-b]pyridine.

Authors:  Younès Ouzidan; Youssef Kandri Rodi; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-30
  5 in total

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