Literature DB >> 21754367

(S)-[5-Methyl-3-(3-methyl-thio-phen-2-yl)-4,5-dihydro-isoxazol-5-yl]methanol.

Young Kwan Ko, Jae Wook Ryu, Dong Wan Koo, Jae Choon Woo, Chong-Hyeak Kim.   

Abstract

In the title compound, C(10)H(13)NO(2)S, the thio-phene and isoxazoline rings are almost coplanar, the dihedral angle between their least-squares planes being 2.08 (1)°. The O-H atoms of the methyl hy-droxy group and the N atom of the isoxazole ring are orientated in the same direction to allow for the formation of inter-molecular O-H⋯N hydrogen bonds that lead to a supra-molecular chain along the a axis.

Entities:  

Year:  2011        PMID: 21754367      PMCID: PMC3089274          DOI: 10.1107/S1600536811011639

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, biological activity and mode of action of herbicides, see; Ryu et al. (2005 ▶); Hwang et al. (2005 ▶); Koo et al. (2007 ▶); Koo & Hwang (2008 ▶). For relevant reviews of herbicides, see; Boger et al. (2002 ▶); Bryant & Bite (2010 ▶).

Experimental

Crystal data

C10H13NO2S M = 211.27 Orthorhombic, a = 7.3672 (9) Å b = 8.8534 (11) Å c = 16.0632 (19) Å V = 1047.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 296 K 0.39 × 0.20 × 0.11 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.898, T max = 0.970 11038 measured reflections 2619 independent reflections 2096 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.149 S = 1.08 2619 reflections 127 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.36 e Å−3 Absolute structure: Flack (1983 ▶), 1087 Friedel pairs Flack parameter: 0.02 (14) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811011639/tk2733sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011639/tk2733Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13NO2SF(000) = 448
Mr = 211.27Dx = 1.339 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4205 reflections
a = 7.3672 (9) Åθ = 2.5–26.1°
b = 8.8534 (11) ŵ = 0.28 mm1
c = 16.0632 (19) ÅT = 296 K
V = 1047.7 (2) Å3Block, silver
Z = 40.39 × 0.20 × 0.11 mm
Bruker APEXII CCD diffractometer2619 independent reflections
Radiation source: fine-focus sealed tube2096 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 28.4°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→9
Tmin = 0.898, Tmax = 0.970k = −11→11
11038 measured reflectionsl = −21→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.149w = 1/[σ2(Fo2) + (0.086P)2 + 0.1644P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2619 reflectionsΔρmax = 0.47 e Å3
127 parametersΔρmin = −0.36 e Å3
0 restraintsAbsolute structure: Flack (1983), 1087 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (14)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.00757 (12)0.90745 (7)0.64150 (4)0.0503 (2)
C2−0.0074 (4)0.8815 (3)0.53306 (13)0.0390 (4)
C3−0.0070 (5)0.7321 (3)0.51314 (15)0.0446 (5)
C4−0.0075 (4)0.6395 (3)0.58618 (17)0.0525 (6)
H4A−0.00800.53450.58410.063*
C5−0.0071 (5)0.7169 (3)0.65749 (17)0.0568 (6)
H5−0.00670.67210.70990.068*
C6−0.0104 (4)1.0139 (2)0.47984 (12)0.0368 (4)
N7−0.0045 (4)1.1462 (2)0.51234 (11)0.0448 (4)
O8−0.0178 (4)1.25711 (18)0.45051 (10)0.0490 (5)
C9−0.0104 (4)1.1857 (3)0.36792 (13)0.0405 (5)
C10−0.0244 (4)1.0174 (3)0.38670 (13)0.0423 (6)
H10A−0.13940.97630.36790.051*
H10B0.07400.96150.36100.051*
C110.1691 (4)1.2299 (4)0.3280 (2)0.0630 (9)
H11A0.17071.33690.31820.094*
H11B0.18281.17740.27600.094*
H11C0.26721.20330.36450.094*
C12−0.1672 (4)1.2500 (4)0.31872 (17)0.0452 (6)
H12A−0.16271.35930.32190.054*
H12B−0.15271.22190.26070.054*
O13−0.3406 (2)1.2007 (2)0.34646 (11)0.0489 (5)
H13−0.35541.22610.39510.073*
C14−0.0073 (5)0.6707 (3)0.42966 (17)0.0507 (6)
H14A−0.00800.75180.39000.076*
H14B−0.11340.60930.42200.076*
H14C0.09940.61010.42160.076*
U11U22U33U12U13U23
S10.0500 (4)0.0629 (4)0.0381 (3)0.0022 (4)−0.0002 (4)0.0035 (2)
C20.0289 (10)0.0484 (11)0.0399 (9)0.0021 (13)−0.0002 (12)0.0035 (8)
C30.0314 (11)0.0483 (12)0.0540 (13)0.0039 (14)0.0010 (14)0.0021 (9)
C40.0406 (12)0.0495 (13)0.0673 (16)0.0052 (15)−0.0003 (17)0.0198 (11)
C50.0458 (13)0.0715 (17)0.0529 (13)0.0036 (18)0.0057 (16)0.0222 (12)
C60.0320 (10)0.0401 (10)0.0383 (10)−0.0011 (13)−0.0029 (12)−0.0017 (8)
N70.0555 (12)0.0430 (9)0.0361 (8)0.0010 (14)−0.0045 (13)0.0004 (7)
O80.0711 (14)0.0379 (8)0.0380 (8)0.0026 (11)−0.0086 (11)−0.0009 (6)
C90.0412 (11)0.0465 (11)0.0340 (9)−0.0041 (14)−0.0004 (13)0.0005 (8)
C100.0525 (15)0.0389 (10)0.0355 (9)0.0021 (12)−0.0024 (12)−0.0035 (8)
C110.0416 (15)0.079 (2)0.069 (2)−0.0069 (16)0.0063 (15)0.0075 (18)
C120.0408 (14)0.0556 (15)0.0391 (12)0.0012 (13)0.0003 (12)0.0045 (11)
O130.0397 (9)0.0606 (11)0.0462 (10)−0.0008 (9)0.0025 (8)−0.0063 (9)
C140.0455 (12)0.0429 (12)0.0637 (14)0.0026 (15)0.0004 (16)0.0016 (10)
S1—C51.706 (3)C9—C111.522 (4)
S1—C21.757 (2)C9—C101.524 (3)
C2—C31.361 (3)C10—H10A0.9700
C2—C61.451 (3)C10—H10B0.9700
C3—C41.431 (3)C11—H11A0.9600
C3—C141.447 (3)C11—H11B0.9600
C4—C51.335 (4)C11—H11C0.9600
C4—H4A0.9300C12—O131.422 (3)
C5—H50.9300C12—H12A0.9700
C6—N71.283 (3)C12—H12B0.9700
C6—C101.500 (3)O13—H130.8200
N7—O81.400 (2)C14—H14A0.9600
O8—C91.470 (3)C14—H14B0.9600
C9—C121.511 (4)C14—H14C0.9600
C5—S1—C291.14 (12)C6—C10—H10A111.3
C3—C2—C6130.3 (2)C9—C10—H10A111.3
C3—C2—S1111.12 (17)C6—C10—H10B111.3
C6—C2—S1118.57 (17)C9—C10—H10B111.3
C2—C3—C4111.4 (2)H10A—C10—H10B109.2
C2—C3—C14125.7 (2)C9—C11—H11A109.5
C4—C3—C14123.0 (2)C9—C11—H11B109.5
C5—C4—C3114.1 (2)H11A—C11—H11B109.5
C5—C4—H4A122.9C9—C11—H11C109.5
C3—C4—H4A122.9H11A—C11—H11C109.5
C4—C5—S1112.24 (19)H11B—C11—H11C109.5
C4—C5—H5123.9O13—C12—C9114.0 (2)
S1—C5—H5123.9O13—C12—H12A108.7
N7—C6—C2119.83 (19)C9—C12—H12A108.7
N7—C6—C10112.94 (18)O13—C12—H12B108.7
C2—C6—C10127.22 (19)C9—C12—H12B108.7
C6—N7—O8110.42 (17)H12A—C12—H12B107.6
N7—O8—C9109.65 (16)C12—O13—H13109.5
O8—C9—C12106.4 (2)C3—C14—H14A109.5
O8—C9—C11107.6 (2)C3—C14—H14B109.5
C12—C9—C11110.33 (19)H14A—C14—H14B109.5
O8—C9—C10103.84 (16)C3—C14—H14C109.5
C12—C9—C10114.8 (2)H14A—C14—H14C109.5
C11—C9—C10113.2 (3)H14B—C14—H14C109.5
C6—C10—C9102.27 (17)
C5—S1—C2—C30.0 (3)C2—C6—N7—O8−177.1 (3)
C5—S1—C2—C6179.1 (2)C10—C6—N7—O81.6 (4)
C6—C2—C3—C4−178.8 (3)C6—N7—O8—C9−7.3 (3)
S1—C2—C3—C40.2 (4)N7—O8—C9—C12131.1 (2)
C6—C2—C3—C140.8 (6)N7—O8—C9—C11−110.7 (3)
S1—C2—C3—C14179.8 (3)N7—O8—C9—C109.5 (3)
C2—C3—C4—C5−0.4 (4)N7—C6—C10—C94.4 (4)
C14—C3—C4—C5−180.0 (3)C2—C6—C10—C9−177.1 (3)
C3—C4—C5—S10.4 (4)O8—C9—C10—C6−8.0 (3)
C2—S1—C5—C4−0.2 (3)C12—C9—C10—C6−123.7 (2)
C3—C2—C6—N7−177.8 (4)C11—C9—C10—C6108.3 (3)
S1—C2—C6—N73.3 (4)O8—C9—C12—O13−70.1 (3)
C3—C2—C6—C103.7 (5)C11—C9—C12—O13173.5 (3)
S1—C2—C6—C10−175.2 (3)C10—C9—C12—O1344.2 (3)
D—H···AD—HH···AD···AD—H···A
O13—H13···N7i0.822.172.905 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O13—H13⋯N7i0.822.172.905 (3)150

Symmetry code: (i) .

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Authors:  George M Sheldrick
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