| Literature DB >> 21754362 |
Hoong-Kun Fun, Suchada Chantrapromma, Abdul Wahab Salae, Ibrahim Abdul Razak, Chatchanok Karalai.
Abstract
The structure of the title diterpenoid, C(20)H(28)O(3), {systematic name: (4bS,8aS)-3-hy-droxy-2-isopropyl-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octa-hydro-phenanthrene-1,4-dione} is confirmed [Eugster et al. (1993 ▶). Private communication (refcode HACGUN). CCDC, Union Road, Cambridge] and its packing is now described. Its absolute structure was established by refinement against data collected with Cu radiation: the two stereogenic centres both have S configurations. One cyclo-hexane ring adopts a chair conformation whereas the other cyclo-hexane ring is in a half-chair conformation and the benzoquinone ring is slightly twisted. An intra-molecular O-H⋯O hydrogen bond generates an S(5) ring motif. In the crystal, mol-ecules are linked into chains along [010] by O-H⋯O hydrogen bonds and weak C-H⋯O inter-actions. The packing also features C⋯O [3.131 (3) Å] short contacts.Entities:
Year: 2011 PMID: 21754362 PMCID: PMC3089143 DOI: 10.1107/S1600536811011457
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H28O3 | |
| Monoclinic, | Melting point = 451–453 K |
| Hall symbol: P 2yb | Cu |
| Cell parameters from 2390 reflections | |
| θ = 5.6–72.1° | |
| µ = 0.66 mm−1 | |
| β = 97.992 (1)° | |
| Block, yellow | |
| 0.52 × 0.31 × 0.15 mm |
| Bruker APEX Duo CCD diffractometer | 2390 independent reflections |
| Radiation source: sealed tube | 2375 reflections with |
| graphite | |
| φ and ω scans | θmax = 72.1°, θmin = 5.6° |
| Absorption correction: multi-scan ( | |
| 5901 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 2390 reflections | Δρmax = 0.35 e Å−3 |
| 217 parameters | Δρmin = −0.20 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983) 699 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.11 (19) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.64538 (13) | −0.0889 (2) | 0.48735 (12) | 0.0254 (3) | |
| O2 | 0.54777 (12) | −0.05136 (18) | 0.25211 (12) | 0.0219 (3) | |
| H1O2 | 0.567 (3) | −0.139 (5) | 0.304 (3) | 0.055 (9)* | |
| O3 | 0.59784 (11) | 0.55637 (18) | 0.31995 (11) | 0.0202 (3) | |
| C1 | 0.91254 (18) | 0.0149 (3) | 0.61639 (17) | 0.0244 (4) | |
| H1A | 0.8633 | −0.0932 | 0.6003 | 0.029* | |
| H1B | 0.9513 | 0.0438 | 0.5414 | 0.029* | |
| C2 | 1.02342 (19) | −0.0129 (3) | 0.72689 (19) | 0.0293 (4) | |
| H2A | 0.9853 | −0.0529 | 0.7997 | 0.035* | |
| H2B | 1.0828 | −0.1033 | 0.7048 | 0.035* | |
| C3 | 1.10107 (17) | 0.1532 (3) | 0.76032 (17) | 0.0258 (5) | |
| H3A | 1.1496 | 0.1824 | 0.6916 | 0.031* | |
| H3B | 1.1652 | 0.1310 | 0.8341 | 0.031* | |
| C4 | 1.01699 (15) | 0.3115 (3) | 0.78684 (15) | 0.0194 (4) | |
| C5 | 0.90137 (15) | 0.3285 (3) | 0.67650 (14) | 0.0181 (4) | |
| H5A | 0.9442 | 0.3520 | 0.6020 | 0.022* | |
| C6 | 0.80962 (18) | 0.4855 (3) | 0.68588 (18) | 0.0264 (4) | |
| H6A | 0.7458 | 0.4577 | 0.7419 | 0.032* | |
| H6B | 0.8607 | 0.5859 | 0.7199 | 0.032* | |
| C7 | 0.73866 (16) | 0.5283 (3) | 0.55608 (16) | 0.0194 (4) | |
| H7A | 0.6623 | 0.6004 | 0.5646 | 0.023* | |
| H7B | 0.7972 | 0.5959 | 0.5108 | 0.023* | |
| C8 | 0.69435 (15) | 0.3689 (2) | 0.48092 (15) | 0.0155 (4) | |
| C9 | 0.72317 (14) | 0.2047 (2) | 0.52206 (14) | 0.0153 (4) | |
| C10 | 0.81709 (15) | 0.1624 (2) | 0.64288 (14) | 0.0153 (3) | |
| C11 | 0.65384 (15) | 0.0604 (3) | 0.44783 (15) | 0.0174 (4) | |
| C12 | 0.58810 (16) | 0.0954 (3) | 0.31623 (15) | 0.0175 (4) | |
| C13 | 0.57151 (15) | 0.2572 (3) | 0.26820 (15) | 0.0165 (4) | |
| C14 | 0.61740 (15) | 0.4041 (3) | 0.35330 (15) | 0.0156 (3) | |
| C15 | 0.51364 (15) | 0.3012 (3) | 0.13372 (14) | 0.0184 (4) | |
| H15A | 0.5037 | 0.4287 | 0.1280 | 0.022* | |
| C16 | 0.61027 (18) | 0.2461 (3) | 0.04345 (16) | 0.0260 (4) | |
| H16A | 0.6936 | 0.3034 | 0.0671 | 0.039* | |
| H16B | 0.5750 | 0.2790 | −0.0409 | 0.039* | |
| H16C | 0.6226 | 0.1215 | 0.0477 | 0.039* | |
| C17 | 0.37759 (17) | 0.2199 (3) | 0.09225 (18) | 0.0262 (4) | |
| H17A | 0.3187 | 0.2518 | 0.1508 | 0.039* | |
| H17B | 0.3856 | 0.0947 | 0.0900 | 0.039* | |
| H17C | 0.3431 | 0.2621 | 0.0099 | 0.039* | |
| C18 | 1.10451 (18) | 0.4757 (3) | 0.78830 (19) | 0.0294 (5) | |
| H18A | 1.1833 | 0.4592 | 0.8472 | 0.044* | |
| H18B | 1.0570 | 0.5755 | 0.8129 | 0.044* | |
| H18C | 1.1279 | 0.4948 | 0.7058 | 0.044* | |
| C19 | 0.97379 (18) | 0.2988 (3) | 0.91827 (15) | 0.0266 (4) | |
| H19A | 1.0493 | 0.3138 | 0.9813 | 0.040* | |
| H19B | 0.9350 | 0.1860 | 0.9281 | 0.040* | |
| H19C | 0.9101 | 0.3886 | 0.9274 | 0.040* | |
| C20 | 0.73179 (17) | 0.1029 (3) | 0.74287 (16) | 0.0265 (4) | |
| H20A | 0.6730 | 0.0115 | 0.7087 | 0.040* | |
| H20B | 0.6813 | 0.2003 | 0.7666 | 0.040* | |
| H20C | 0.7880 | 0.0598 | 0.8155 | 0.040* |
| O1 | 0.0347 (7) | 0.0149 (7) | 0.0236 (6) | −0.0044 (6) | −0.0064 (5) | 0.0030 (5) |
| O2 | 0.0283 (6) | 0.0142 (8) | 0.0208 (6) | −0.0021 (5) | −0.0050 (5) | −0.0011 (5) |
| O3 | 0.0217 (6) | 0.0152 (7) | 0.0221 (6) | −0.0003 (5) | −0.0024 (4) | 0.0026 (5) |
| C1 | 0.0284 (8) | 0.0194 (11) | 0.0228 (8) | 0.0053 (8) | −0.0062 (7) | −0.0049 (7) |
| C2 | 0.0307 (9) | 0.0224 (11) | 0.0313 (10) | 0.0092 (9) | −0.0082 (7) | −0.0048 (9) |
| C3 | 0.0194 (8) | 0.0331 (13) | 0.0227 (8) | 0.0065 (8) | −0.0046 (6) | −0.0044 (8) |
| C4 | 0.0183 (7) | 0.0220 (11) | 0.0169 (7) | −0.0007 (8) | −0.0006 (6) | −0.0001 (7) |
| C5 | 0.0189 (7) | 0.0198 (10) | 0.0152 (7) | −0.0025 (7) | 0.0009 (6) | 0.0001 (7) |
| C6 | 0.0310 (9) | 0.0199 (10) | 0.0258 (9) | 0.0003 (8) | −0.0055 (7) | −0.0054 (8) |
| C7 | 0.0224 (7) | 0.0148 (10) | 0.0207 (8) | −0.0005 (7) | 0.0016 (6) | −0.0011 (7) |
| C8 | 0.0143 (7) | 0.0157 (10) | 0.0163 (7) | −0.0009 (6) | 0.0020 (6) | −0.0002 (6) |
| C9 | 0.0147 (6) | 0.0167 (10) | 0.0145 (7) | −0.0008 (6) | 0.0020 (5) | −0.0005 (6) |
| C10 | 0.0172 (7) | 0.0158 (9) | 0.0124 (7) | −0.0013 (7) | 0.0005 (6) | 0.0006 (6) |
| C11 | 0.0177 (7) | 0.0158 (10) | 0.0182 (7) | 0.0007 (7) | 0.0015 (6) | 0.0008 (7) |
| C12 | 0.0176 (7) | 0.0167 (11) | 0.0178 (8) | −0.0011 (7) | 0.0016 (6) | −0.0020 (7) |
| C13 | 0.0141 (7) | 0.0179 (10) | 0.0170 (8) | 0.0000 (6) | 0.0004 (6) | −0.0003 (7) |
| C14 | 0.0132 (6) | 0.0157 (9) | 0.0181 (7) | 0.0007 (6) | 0.0029 (6) | −0.0001 (7) |
| C15 | 0.0220 (7) | 0.0160 (10) | 0.0161 (7) | 0.0003 (7) | −0.0016 (6) | 0.0009 (7) |
| C16 | 0.0301 (9) | 0.0294 (12) | 0.0181 (8) | 0.0049 (8) | 0.0020 (6) | 0.0026 (7) |
| C17 | 0.0224 (8) | 0.0256 (11) | 0.0277 (8) | 0.0000 (8) | −0.0065 (6) | −0.0001 (8) |
| C18 | 0.0268 (9) | 0.0307 (12) | 0.0281 (9) | −0.0091 (9) | −0.0056 (7) | 0.0027 (9) |
| C19 | 0.0277 (8) | 0.0341 (12) | 0.0167 (8) | −0.0016 (8) | −0.0013 (6) | −0.0050 (8) |
| C20 | 0.0225 (8) | 0.0388 (13) | 0.0181 (8) | −0.0087 (8) | 0.0020 (6) | 0.0034 (8) |
| O1—C11 | 1.224 (2) | C8—C14 | 1.506 (2) |
| O2—C12 | 1.349 (2) | C9—C11 | 1.481 (2) |
| O2—H1O2 | 0.88 (4) | C9—C10 | 1.536 (2) |
| O3—C14 | 1.225 (2) | C10—C20 | 1.542 (2) |
| C1—C2 | 1.537 (2) | C11—C12 | 1.501 (2) |
| C1—C10 | 1.542 (2) | C12—C13 | 1.341 (3) |
| C1—H1A | 0.9700 | C13—C14 | 1.481 (3) |
| C1—H1B | 0.9700 | C13—C15 | 1.519 (2) |
| C2—C3 | 1.513 (3) | C15—C17 | 1.532 (2) |
| C2—H2A | 0.9700 | C15—C16 | 1.535 (2) |
| C2—H2B | 0.9700 | C15—H15A | 0.9800 |
| C3—C4 | 1.533 (3) | C16—H16A | 0.9600 |
| C3—H3A | 0.9700 | C16—H16B | 0.9600 |
| C3—H3B | 0.9700 | C16—H16C | 0.9600 |
| C4—C19 | 1.538 (2) | C17—H17A | 0.9600 |
| C4—C18 | 1.539 (3) | C17—H17B | 0.9600 |
| C4—C5 | 1.558 (2) | C17—H17C | 0.9600 |
| C5—C6 | 1.534 (3) | C18—H18A | 0.9600 |
| C5—C10 | 1.548 (3) | C18—H18B | 0.9600 |
| C5—H5A | 0.9800 | C18—H18C | 0.9600 |
| C6—C7 | 1.514 (2) | C19—H19A | 0.9600 |
| C6—H6A | 0.9700 | C19—H19B | 0.9600 |
| C6—H6B | 0.9700 | C19—H19C | 0.9600 |
| C7—C8 | 1.495 (2) | C20—H20A | 0.9600 |
| C7—H7A | 0.9700 | C20—H20B | 0.9600 |
| C7—H7B | 0.9700 | C20—H20C | 0.9600 |
| C8—C9 | 1.348 (3) | ||
| C12—O2—H1O2 | 107 (2) | C9—C10—C5 | 106.69 (14) |
| C2—C1—C10 | 112.12 (15) | C20—C10—C5 | 115.45 (14) |
| C2—C1—H1A | 109.2 | C1—C10—C5 | 107.17 (13) |
| C10—C1—H1A | 109.2 | O1—C11—C9 | 123.94 (15) |
| C2—C1—H1B | 109.2 | O1—C11—C12 | 116.59 (16) |
| C10—C1—H1B | 109.2 | C9—C11—C12 | 119.46 (16) |
| H1A—C1—H1B | 107.9 | C13—C12—O2 | 123.80 (15) |
| C3—C2—C1 | 111.93 (18) | C13—C12—C11 | 122.80 (16) |
| C3—C2—H2A | 109.2 | O2—C12—C11 | 113.40 (16) |
| C1—C2—H2A | 109.2 | C12—C13—C14 | 116.67 (14) |
| C3—C2—H2B | 109.2 | C12—C13—C15 | 125.48 (17) |
| C1—C2—H2B | 109.2 | C14—C13—C15 | 117.82 (16) |
| H2A—C2—H2B | 107.9 | O3—C14—C13 | 120.92 (15) |
| C2—C3—C4 | 114.57 (15) | O3—C14—C8 | 118.62 (15) |
| C2—C3—H3A | 108.6 | C13—C14—C8 | 120.41 (16) |
| C4—C3—H3A | 108.6 | C13—C15—C17 | 113.86 (15) |
| C2—C3—H3B | 108.6 | C13—C15—C16 | 109.82 (14) |
| C4—C3—H3B | 108.6 | C17—C15—C16 | 110.11 (15) |
| H3A—C3—H3B | 107.6 | C13—C15—H15A | 107.6 |
| C3—C4—C19 | 111.12 (16) | C17—C15—H15A | 107.6 |
| C3—C4—C18 | 107.69 (15) | C16—C15—H15A | 107.6 |
| C19—C4—C18 | 106.43 (16) | C15—C16—H16A | 109.5 |
| C3—C4—C5 | 108.09 (14) | C15—C16—H16B | 109.5 |
| C19—C4—C5 | 114.68 (13) | H16A—C16—H16B | 109.5 |
| C18—C4—C5 | 108.58 (15) | C15—C16—H16C | 109.5 |
| C6—C5—C10 | 109.26 (13) | H16A—C16—H16C | 109.5 |
| C6—C5—C4 | 114.94 (15) | H16B—C16—H16C | 109.5 |
| C10—C5—C4 | 116.62 (16) | C15—C17—H17A | 109.5 |
| C6—C5—H5A | 104.9 | C15—C17—H17B | 109.5 |
| C10—C5—H5A | 104.9 | H17A—C17—H17B | 109.5 |
| C4—C5—H5A | 104.9 | C15—C17—H17C | 109.5 |
| C7—C6—C5 | 109.12 (15) | H17A—C17—H17C | 109.5 |
| C7—C6—H6A | 109.9 | H17B—C17—H17C | 109.5 |
| C5—C6—H6A | 109.9 | C4—C18—H18A | 109.5 |
| C7—C6—H6B | 109.9 | C4—C18—H18B | 109.5 |
| C5—C6—H6B | 109.9 | H18A—C18—H18B | 109.5 |
| H6A—C6—H6B | 108.3 | C4—C18—H18C | 109.5 |
| C8—C7—C6 | 113.02 (17) | H18A—C18—H18C | 109.5 |
| C8—C7—H7A | 109.0 | H18B—C18—H18C | 109.5 |
| C6—C7—H7A | 109.0 | C4—C19—H19A | 109.5 |
| C8—C7—H7B | 109.0 | C4—C19—H19B | 109.5 |
| C6—C7—H7B | 109.0 | H19A—C19—H19B | 109.5 |
| H7A—C7—H7B | 107.8 | C4—C19—H19C | 109.5 |
| C9—C8—C7 | 122.99 (14) | H19A—C19—H19C | 109.5 |
| C9—C8—C14 | 121.79 (15) | H19B—C19—H19C | 109.5 |
| C7—C8—C14 | 115.20 (15) | C10—C20—H20A | 109.5 |
| C8—C9—C11 | 116.69 (14) | C10—C20—H20B | 109.5 |
| C8—C9—C10 | 123.65 (15) | H20A—C20—H20B | 109.5 |
| C11—C9—C10 | 119.60 (16) | C10—C20—H20C | 109.5 |
| C9—C10—C20 | 107.53 (12) | H20A—C20—H20C | 109.5 |
| C9—C10—C1 | 109.58 (13) | H20B—C20—H20C | 109.5 |
| C20—C10—C1 | 110.27 (16) | ||
| C10—C1—C2—C3 | −56.7 (2) | C4—C5—C10—C9 | −172.64 (13) |
| C1—C2—C3—C4 | 54.2 (2) | C6—C5—C10—C20 | −64.48 (19) |
| C2—C3—C4—C19 | 76.8 (2) | C4—C5—C10—C20 | 67.96 (19) |
| C2—C3—C4—C18 | −167.00 (15) | C6—C5—C10—C1 | 172.24 (13) |
| C2—C3—C4—C5 | −49.9 (2) | C4—C5—C10—C1 | −55.33 (17) |
| C3—C4—C5—C6 | −177.96 (16) | C8—C9—C11—O1 | −162.38 (16) |
| C19—C4—C5—C6 | 57.5 (2) | C10—C9—C11—O1 | 14.7 (2) |
| C18—C4—C5—C6 | −61.40 (19) | C8—C9—C11—C12 | 17.2 (2) |
| C3—C4—C5—C10 | 52.25 (18) | C10—C9—C11—C12 | −165.74 (13) |
| C19—C4—C5—C10 | −72.3 (2) | O1—C11—C12—C13 | 169.20 (16) |
| C18—C4—C5—C10 | 168.81 (14) | C9—C11—C12—C13 | −10.4 (2) |
| C10—C5—C6—C7 | −68.58 (19) | O1—C11—C12—O2 | −10.7 (2) |
| C4—C5—C6—C7 | 158.12 (15) | C9—C11—C12—O2 | 169.71 (14) |
| C5—C6—C7—C8 | 40.90 (19) | O2—C12—C13—C14 | 177.82 (14) |
| C6—C7—C8—C9 | −4.3 (2) | C11—C12—C13—C14 | −2.1 (2) |
| C6—C7—C8—C14 | 177.17 (14) | O2—C12—C13—C15 | −4.1 (2) |
| C7—C8—C9—C11 | 169.78 (13) | C11—C12—C13—C15 | 176.03 (14) |
| C14—C8—C9—C11 | −11.8 (2) | C12—C13—C14—O3 | −174.92 (15) |
| C7—C8—C9—C10 | −7.2 (2) | C15—C13—C14—O3 | 6.8 (2) |
| C14—C8—C9—C10 | 171.21 (13) | C12—C13—C14—C8 | 7.7 (2) |
| C8—C9—C10—C20 | 105.79 (19) | C15—C13—C14—C8 | −170.58 (13) |
| C11—C9—C10—C20 | −71.10 (19) | C9—C8—C14—O3 | −177.84 (15) |
| C8—C9—C10—C1 | −134.34 (17) | C7—C8—C14—O3 | 0.68 (19) |
| C11—C9—C10—C1 | 48.77 (19) | C9—C8—C14—C13 | −0.4 (2) |
| C8—C9—C10—C5 | −18.63 (19) | C7—C8—C14—C13 | 178.12 (13) |
| C11—C9—C10—C5 | 164.48 (13) | C12—C13—C15—C17 | 54.2 (2) |
| C2—C1—C10—C9 | 170.62 (16) | C14—C13—C15—C17 | −127.68 (17) |
| C2—C1—C10—C20 | −71.2 (2) | C12—C13—C15—C16 | −69.8 (2) |
| C2—C1—C10—C5 | 55.2 (2) | C14—C13—C15—C16 | 108.33 (18) |
| C6—C5—C10—C9 | 54.93 (16) |
| H··· | ||||
| O2—H1O2···O1 | 0.88 (4) | 2.05 (3) | 2.5977 (18) | 119 (3) |
| O2—H1O2···O3i | 0.88 (4) | 2.35 (4) | 3.1079 (19) | 145 (3) |
| C1—H1A···O1 | 0.97 | 2.38 | 2.993 (2) | 120 |
| C7—H7A···O1ii | 0.97 | 2.51 | 3.131 (3) | 122 |
| C17—H17B···O2 | 0.96 | 2.49 | 3.071 (2) | 119 |
| C20—H20A···O1 | 0.96 | 2.47 | 3.125 (2) | 125 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H1 | 0.88 (4) | 2.05 (3) | 2.5977 (18) | 119 (3) |
| O2—H1 | 0.88 (4) | 2.35 (4) | 3.1079 (19) | 145 (3) |
| C1—H1 | 0.97 | 2.38 | 2.993 (2) | 120 |
| C7—H7 | 0.97 | 2.51 | 3.131 (3) | 122 |
| C17—H17 | 0.96 | 2.49 | 3.071 (2) | 119 |
| C20—H20 | 0.96 | 2.47 | 3.125 (2) | 125 |
Symmetry codes: (i) ; (ii) .