Literature DB >> 21754360

Pyridine-2,6-dicarboxaldehyde bis[(diphenylmethylidene)hydrazone].

Florina Dumitru, Mihaela-Diana Serb, Ulli Englert.   

Abstract

The title compound, C(33)H(25)N(5), belongs to the family of n class="Chemical">pyridine-2,6-dicarboxaldehyde Schiff bases which possess a terdentate coordinating site (-N=C-C=N-C-C=N-) similar to terpyridine derivatives. The dihedral angles between pairs of terminal rings are 69.67 (9) and 66.23 (9)°. The shortest distance between the centroids of aromatic rings in neighbouring mol-ecules is 3.8080 (14) Å.

Entities:  

Year:  2011        PMID: 21754360      PMCID: PMC3089124          DOI: 10.1107/S1600536811011238

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For compounds containing the (–N=C–C=N–C–C=N–) moiety in acyclic ligands, see: Vance et al. (1998 ▶); Albrecht et al. (2007 ▶) and in macrocyclic ligands, see: Haussmann et al. (2007 ▶); Plattner et al. (2002 ▶). For electrostatic inter­actions between the nitro­gen lone pairs, which determine the all-trans transoid solid-state configuration of the archetypal terpyridine ligand, see: Fallahpour (2003 ▶); Constable (2007 ▶).

Experimental

Crystal data

C33H25N5 M = 491.58 Monoclinic, a = 23.702 (5) Å b = 12.344 (3) Å c = 18.758 (4) Å β = 106.742 (4)° V = 5255.3 (19) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.40 × 0.17 × 0.08 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.971, T max = 0.994 30994 measured reflections 5391 independent reflections 3723 reflections with I > 2σ(I) R int = 0.090

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.117 S = 1.04 5391 reflections 343 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAIn class="Chemical">NT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811011238/bt5500sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011238/bt5500Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C33H25N5F(000) = 2064
Mr = 491.58Dx = 1.243 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1380 reflections
a = 23.702 (5) Åθ = 2.3–20.1°
b = 12.344 (3) ŵ = 0.08 mm1
c = 18.758 (4) ÅT = 100 K
β = 106.742 (4)°Fragment, yellow
V = 5255.3 (19) Å30.40 × 0.17 × 0.08 mm
Z = 8
Bruker SMART APEX CCD diffractometer5391 independent reflections
Radiation source: fine-focus sealed tube3723 reflections with I > 2σ(I)
graphiteRint = 0.090
ω scansθmax = 26.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −29→29
Tmin = 0.971, Tmax = 0.994k = −15→15
30994 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0352P)2 + 2.9488P] where P = (Fo2 + 2Fc2)/3
5391 reflections(Δ/σ)max = 0.001
343 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.61026 (7)0.42994 (12)0.40175 (8)0.0224 (4)
N20.48535 (6)0.36138 (12)0.46057 (8)0.0234 (4)
N30.42988 (6)0.41191 (12)0.44402 (8)0.0230 (4)
N40.75138 (7)0.44728 (13)0.37188 (9)0.0250 (4)
N50.77596 (7)0.53493 (13)0.34311 (9)0.0253 (4)
C10.65304 (8)0.23302 (16)0.46965 (11)0.0276 (5)
H10.66770.16640.49310.033*
C20.68692 (8)0.29596 (15)0.43668 (10)0.0260 (4)
H20.72490.27230.43580.031*
C30.66450 (8)0.39407 (15)0.40490 (10)0.0218 (4)
C40.59769 (8)0.26889 (15)0.46784 (10)0.0246 (4)
H40.57350.22730.49000.029*
C50.57755 (8)0.36729 (15)0.43294 (10)0.0214 (4)
C60.51856 (8)0.40877 (15)0.42733 (10)0.0219 (4)
H60.50480.47180.39860.026*
C70.39333 (8)0.36647 (14)0.47450 (10)0.0207 (4)
C80.40803 (7)0.26922 (14)0.52396 (10)0.0204 (4)
C90.40873 (8)0.27596 (16)0.59825 (10)0.0254 (4)
H90.39900.34230.61740.031*
C100.42363 (8)0.18627 (17)0.64447 (11)0.0307 (5)
H100.42450.19180.69530.037*
C110.43716 (9)0.08927 (16)0.61696 (11)0.0303 (5)
H110.44740.02800.64870.036*
C120.43578 (8)0.08137 (16)0.54286 (11)0.0279 (5)
H120.44450.01420.52360.033*
C130.42185 (8)0.17068 (15)0.49684 (11)0.0249 (4)
H130.42170.16490.44630.030*
C140.33326 (8)0.41441 (14)0.45463 (10)0.0209 (4)
C150.32071 (8)0.50628 (15)0.40943 (10)0.0256 (4)
H150.35120.53990.39390.031*
C160.26442 (9)0.54899 (16)0.38698 (11)0.0287 (5)
H160.25640.61110.35580.034*
C170.21974 (9)0.50112 (16)0.40998 (11)0.0289 (5)
H170.18100.53010.39420.035*
C180.23155 (8)0.41164 (16)0.45561 (12)0.0299 (5)
H180.20100.37960.47200.036*
C190.28792 (8)0.36812 (15)0.47775 (11)0.0265 (4)
H190.29570.30610.50900.032*
C200.69872 (8)0.46825 (15)0.37254 (10)0.0239 (4)
H200.68110.53430.35130.029*
C210.82136 (8)0.51081 (15)0.32125 (9)0.0209 (4)
C220.84387 (8)0.39924 (15)0.31789 (10)0.0211 (4)
C230.90133 (8)0.37120 (16)0.35746 (10)0.0267 (4)
H230.92650.42410.38730.032*
C240.92223 (9)0.26719 (16)0.35387 (11)0.0313 (5)
H240.96110.24840.38200.038*
C250.88609 (9)0.19091 (17)0.30904 (12)0.0339 (5)
H250.90040.11970.30590.041*
C260.82924 (9)0.21799 (16)0.26881 (12)0.0340 (5)
H260.80460.16550.23780.041*
C270.80817 (8)0.32135 (16)0.27363 (11)0.0277 (5)
H270.76890.33920.24640.033*
C280.85117 (8)0.60294 (15)0.29616 (10)0.0220 (4)
C290.83879 (8)0.71002 (15)0.31126 (10)0.0246 (4)
H290.81040.72400.33700.030*
C300.86733 (9)0.79540 (16)0.28925 (10)0.0282 (5)
H300.85830.86760.29970.034*
C310.90906 (9)0.77644 (17)0.25204 (10)0.0309 (5)
H310.92940.83530.23800.037*
C320.92088 (9)0.67150 (17)0.23551 (11)0.0318 (5)
H320.94880.65830.20890.038*
C330.89241 (8)0.58532 (16)0.25738 (10)0.0273 (4)
H330.90110.51340.24580.033*
U11U22U33U12U13U23
N10.0201 (8)0.0261 (9)0.0225 (8)0.0002 (7)0.0088 (7)0.0003 (7)
N20.0173 (8)0.0262 (9)0.0276 (9)0.0014 (7)0.0079 (7)−0.0006 (7)
N30.0173 (8)0.0247 (9)0.0277 (9)0.0011 (7)0.0075 (7)−0.0011 (7)
N40.0230 (9)0.0262 (9)0.0297 (9)0.0000 (7)0.0136 (7)0.0020 (7)
N50.0226 (9)0.0271 (9)0.0296 (9)−0.0010 (7)0.0128 (7)0.0028 (7)
C10.0253 (11)0.0254 (11)0.0325 (11)0.0033 (9)0.0090 (9)0.0058 (9)
C20.0201 (10)0.0312 (11)0.0286 (10)0.0038 (8)0.0102 (8)0.0016 (8)
C30.0182 (10)0.0273 (11)0.0213 (9)0.0016 (8)0.0078 (8)−0.0014 (8)
C40.0223 (10)0.0266 (11)0.0275 (10)0.0002 (8)0.0114 (8)0.0030 (8)
C50.0194 (10)0.0257 (10)0.0201 (9)−0.0015 (8)0.0070 (8)−0.0018 (8)
C60.0204 (10)0.0234 (10)0.0227 (10)0.0007 (8)0.0076 (8)0.0010 (8)
C70.0190 (9)0.0208 (10)0.0231 (10)−0.0029 (8)0.0072 (8)−0.0041 (8)
C80.0128 (9)0.0237 (10)0.0255 (10)−0.0016 (7)0.0069 (8)0.0000 (8)
C90.0220 (10)0.0277 (11)0.0297 (11)0.0039 (8)0.0124 (8)−0.0004 (8)
C100.0286 (11)0.0417 (13)0.0264 (11)0.0061 (10)0.0153 (9)0.0065 (9)
C110.0279 (11)0.0315 (12)0.0351 (12)0.0041 (9)0.0148 (9)0.0103 (9)
C120.0249 (11)0.0228 (11)0.0381 (12)0.0023 (8)0.0127 (9)0.0003 (9)
C130.0215 (10)0.0278 (11)0.0258 (10)−0.0007 (8)0.0073 (8)−0.0014 (8)
C140.0210 (10)0.0197 (10)0.0227 (10)0.0008 (8)0.0073 (8)−0.0038 (8)
C150.0224 (10)0.0270 (11)0.0295 (10)0.0004 (8)0.0107 (8)0.0021 (8)
C160.0284 (11)0.0256 (11)0.0318 (11)0.0052 (9)0.0083 (9)0.0050 (9)
C170.0185 (10)0.0296 (11)0.0370 (12)0.0050 (8)0.0054 (9)−0.0023 (9)
C180.0182 (10)0.0277 (11)0.0462 (13)−0.0004 (8)0.0130 (9)0.0020 (9)
C190.0197 (10)0.0235 (10)0.0366 (11)−0.0006 (8)0.0085 (9)0.0037 (9)
C200.0216 (10)0.0265 (10)0.0261 (10)0.0032 (8)0.0110 (8)0.0015 (8)
C210.0168 (9)0.0275 (10)0.0188 (9)−0.0010 (8)0.0059 (7)−0.0007 (8)
C220.0199 (10)0.0249 (10)0.0218 (9)−0.0005 (8)0.0115 (8)0.0008 (8)
C230.0241 (10)0.0328 (11)0.0249 (10)0.0009 (9)0.0096 (8)−0.0005 (8)
C240.0269 (11)0.0374 (12)0.0326 (11)0.0109 (9)0.0135 (9)0.0087 (9)
C250.0422 (13)0.0255 (11)0.0448 (13)0.0059 (10)0.0297 (11)0.0063 (10)
C260.0335 (12)0.0293 (12)0.0456 (13)−0.0081 (9)0.0218 (10)−0.0095 (10)
C270.0199 (10)0.0310 (11)0.0344 (11)−0.0040 (9)0.0113 (9)−0.0047 (9)
C280.0167 (9)0.0285 (11)0.0202 (9)−0.0028 (8)0.0043 (8)−0.0005 (8)
C290.0220 (10)0.0293 (11)0.0221 (10)0.0007 (8)0.0057 (8)0.0007 (8)
C300.0311 (11)0.0255 (11)0.0245 (10)−0.0009 (9)0.0026 (9)0.0023 (8)
C310.0303 (11)0.0359 (12)0.0248 (10)−0.0098 (9)0.0050 (9)0.0050 (9)
C320.0283 (11)0.0408 (13)0.0300 (11)−0.0060 (9)0.0140 (9)−0.0004 (9)
C330.0248 (11)0.0303 (11)0.0289 (11)−0.0018 (9)0.0111 (9)−0.0022 (9)
N1—C51.343 (2)C15—H150.95
N1—C31.345 (2)C16—C171.385 (3)
N2—C61.278 (2)C16—H160.95
N2—N31.407 (2)C17—C181.376 (3)
N3—C71.295 (2)C17—H170.95
N4—C201.278 (2)C18—C191.388 (3)
N4—N51.408 (2)C18—H180.95
N5—C211.292 (2)C19—H190.95
C1—C41.376 (3)C20—H200.95
C1—C21.385 (3)C21—C221.485 (3)
C1—H10.95C21—C281.485 (3)
C2—C31.386 (3)C22—C271.387 (3)
C2—H20.95C22—C231.394 (3)
C3—C201.466 (3)C23—C241.385 (3)
C4—C51.397 (3)C23—H230.95
C4—H40.95C24—C251.383 (3)
C5—C61.464 (2)C24—H240.95
C6—H60.95C25—C261.383 (3)
C7—C141.487 (2)C25—H250.95
C7—C81.496 (2)C26—C271.383 (3)
C8—C91.391 (3)C26—H260.95
C8—C131.393 (3)C27—H270.95
C9—C101.388 (3)C28—C331.393 (3)
C9—H90.95C28—C291.400 (3)
C10—C111.378 (3)C29—C301.378 (3)
C10—H100.95C29—H290.95
C11—C121.384 (3)C30—C311.385 (3)
C11—H110.95C30—H300.95
C12—C131.380 (3)C31—C321.379 (3)
C12—H120.95C31—H310.95
C13—H130.95C32—C331.384 (3)
C14—C191.392 (3)C32—H320.95
C14—C151.396 (3)C33—H330.95
C15—C161.383 (3)
C5—N1—C3117.13 (16)C17—C16—H16120.0
C6—N2—N3110.94 (15)C18—C17—C16119.95 (18)
C7—N3—N2114.33 (15)C18—C17—H17120.0
C20—N4—N5111.17 (15)C16—C17—H17120.0
C21—N5—N4114.78 (15)C17—C18—C19120.17 (19)
C4—C1—C2118.69 (18)C17—C18—H18119.9
C4—C1—H1120.7C19—C18—H18119.9
C2—C1—H1120.7C18—C19—C14120.72 (18)
C1—C2—C3118.84 (18)C18—C19—H19119.6
C1—C2—H2120.6C14—C19—H19119.6
C3—C2—H2120.6N4—C20—C3122.41 (17)
N1—C3—C2123.35 (17)N4—C20—H20118.8
N1—C3—C20114.35 (16)C3—C20—H20118.8
C2—C3—C20122.30 (17)N5—C21—C22124.72 (17)
C1—C4—C5119.08 (18)N5—C21—C28116.10 (16)
C1—C4—H4120.5C22—C21—C28119.16 (16)
C5—C4—H4120.5C27—C22—C23118.72 (18)
N1—C5—C4122.86 (17)C27—C22—C21120.22 (17)
N1—C5—C6115.26 (16)C23—C22—C21121.04 (17)
C4—C5—C6121.88 (17)C24—C23—C22120.84 (19)
N2—C6—C5120.97 (17)C24—C23—H23119.6
N2—C6—H6119.5C22—C23—H23119.6
C5—C6—H6119.5C25—C24—C23119.56 (19)
N3—C7—C14115.53 (16)C25—C24—H24120.2
N3—C7—C8123.75 (16)C23—C24—H24120.2
C14—C7—C8120.66 (15)C26—C25—C24120.19 (19)
C9—C8—C13118.80 (17)C26—C25—H25119.9
C9—C8—C7120.45 (16)C24—C25—H25119.9
C13—C8—C7120.75 (16)C25—C26—C27120.07 (19)
C10—C9—C8120.36 (18)C25—C26—H26120.0
C10—C9—H9119.8C27—C26—H26120.0
C8—C9—H9119.8C26—C27—C22120.60 (19)
C11—C10—C9120.28 (18)C26—C27—H27119.7
C11—C10—H10119.9C22—C27—H27119.7
C9—C10—H10119.9C33—C28—C29118.18 (17)
C10—C11—C12119.77 (18)C33—C28—C21121.01 (17)
C10—C11—H11120.1C29—C28—C21120.81 (17)
C12—C11—H11120.1C30—C29—C28120.78 (18)
C13—C12—C11120.26 (18)C30—C29—H29119.6
C13—C12—H12119.9C28—C29—H29119.6
C11—C12—H12119.9C29—C30—C31120.34 (19)
C12—C13—C8120.52 (18)C29—C30—H30119.8
C12—C13—H13119.7C31—C30—H30119.8
C8—C13—H13119.7C32—C31—C30119.52 (19)
C19—C14—C15118.32 (17)C32—C31—H31120.2
C19—C14—C7121.87 (16)C30—C31—H31120.2
C15—C14—C7119.78 (17)C31—C32—C33120.49 (19)
C16—C15—C14120.84 (18)C31—C32—H32119.8
C16—C15—H15119.6C33—C32—H32119.8
C14—C15—H15119.6C32—C33—C28120.67 (19)
C15—C16—C17119.98 (18)C32—C33—H33119.7
C15—C16—H16120.0C28—C33—H33119.7
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2':6',2''-terpyridines: from chemical obscurity to common supramolecular motifs.

Authors:  Edwin C Constable
Journal:  Chem Soc Rev       Date:  2006-11-27       Impact factor: 54.564

3.  An Octahedral Template Based on a New Molecular Turn: Synthesis and Structure of a Model Complex and a Reactive, Diphenolic Ligand and Its Metal Complexes.

Authors:  Andrew L. Vance; Nathaniel W. Alcock; Joseph A. Heppert; Daryle H. Busch
Journal:  Inorg Chem       Date:  1998-12-28       Impact factor: 5.165

4.  Equilibrating dynamic [2]rotaxanes.

Authors:  Philip C Haussmann; Saeed I Khan; J Fraser Stoddart
Journal:  J Org Chem       Date:  2007-08-08       Impact factor: 4.354

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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