Literature DB >> 21754352

Bis{μ(3)-cis-N-(2-carboxyl-ato-5-chloro-phen-yl)-N'-[3-(dimethyl-amino)-prop-yl]oxamidato(3-)}bis-(perchlorato-κO)bis-(N,N,N',N'-tetra-methyl-ethylene-diamine)-tetra-copper(II).

Yanlong Sun1, Xuelian Xu.   

Abstract

The title complex, [Cu(4)(C(14)H(15)ClN(3)O(4))(2)(ClO(4))(2)(C(6)H(16)N(2))(2)], is a tetra-nuclear copper(II) complex lying about an inversion center wherein a cis-oxamide group is coordinated to both Cu atoms with bite angles of 84.45 (6) and 84.08 (10)°. Both Cu atoms adopt distorted square-pyramidal coordination geometries. The apical position of one Cu atom is occupied by an O atom from a perchlorate group, with a Cu-O bond length of 2.519 (7) Å, while the apical site of the other Cu atom is occupied by a carboxyl-ate O atom with a Cu-O distance of 2.281 (3) Å. The Cu atoms bridged by oxamide and carboxyl-ate-group bridges are separated by 5.204 (6) and 5.603 (2) Å, respectively. The crystal structure is consolidated by weak inter-molecular C-H⋯O inter-actions. Two perchlorate O atoms are disordered with unequal site-occupancy factors.

Entities:  

Year:  2011        PMID: 21754352      PMCID: PMC3089313          DOI: 10.1107/S1600536811014978

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the Na[Cu(oxbm)] ligand, see: Tao et al. (2003 ▶). For a related crystal structure, see: Zang et al. (2003 ▶).

Experimental

Crystal data

[Cu4(C14H15ClN3O4)2(ClO4)2(C6H16N2)2] M = 1334.96 Monoclinic, a = 12.5750 (13) Å b = 16.4137 (19) Å c = 14.1080 (15) Å β = 113.988 (2)° V = 2660.4 (5) Å3 Z = 2 Mo Kα radiation μ = 1.85 mm−1 T = 298 K 0.49 × 0.48 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.464, T max = 0.708 12993 measured reflections 4682 independent reflections 3287 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.133 S = 1.00 4682 reflections 359 parameters H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.76 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811014978/pv2408sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014978/pv2408Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu4(C14H15ClN3O4)2(ClO4)2(C6H16N2)2]F(000) = 1368
Mr = 1334.96Dx = 1.666 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4604 reflections
a = 12.5750 (13) Åθ = 2.2–27.7°
b = 16.4137 (19) ŵ = 1.85 mm1
c = 14.1080 (15) ÅT = 298 K
β = 113.988 (2)°Block, green
V = 2660.4 (5) Å30.49 × 0.48 × 0.20 mm
Z = 2
Bruker SMART CCD area-detector diffractometer4682 independent reflections
Radiation source: fine-focus sealed tube3287 reflections with I > 2σ(I)
graphiteRint = 0.052
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→14
Tmin = 0.464, Tmax = 0.708k = −19→19
12993 measured reflectionsl = −16→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.072P)2 + 1.0008P] where P = (Fo2 + 2Fc2)/3
4682 reflections(Δ/σ)max = 0.001
359 parametersΔρmax = 0.65 e Å3
0 restraintsΔρmin = −0.76 e Å3
Experimental. Yield, 58%; analysis, calculated for C40H62Cl4N10O16Cu4: C 35.99, H, 4.68; N 10.49%; found: C 35.96, H 4.69, N, 10.51%.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.28269 (4)0.45069 (3)0.33563 (4)0.03039 (18)
Cu20.62990 (4)0.24708 (3)0.46234 (4)0.03051 (18)
Cl10.79310 (12)0.57100 (8)0.29681 (13)0.0599 (4)
Cl20.21665 (12)0.38831 (7)0.07826 (11)0.0475 (3)
N10.4498 (3)0.45347 (19)0.3604 (3)0.0243 (8)
N20.3096 (3)0.3342 (2)0.3638 (3)0.0317 (9)
N30.1119 (3)0.4486 (2)0.3195 (3)0.0315 (9)
N40.7940 (3)0.2373 (2)0.4680 (3)0.0369 (10)
N50.6464 (3)0.1307 (2)0.5127 (3)0.0324 (9)
O10.2790 (3)0.56694 (18)0.3491 (3)0.0464 (9)
O20.3375 (3)0.69384 (17)0.3819 (3)0.0403 (8)
O30.6008 (2)0.35845 (17)0.4019 (3)0.0357 (8)
O40.4616 (3)0.24340 (16)0.4152 (3)0.0345 (8)
O50.2228 (3)0.4578 (2)0.1424 (3)0.0554 (10)
O60.1517 (4)0.3248 (2)0.0975 (4)0.0762 (13)
O70.338 (3)0.357 (2)0.123 (4)0.068 (5)0.57
O80.190 (7)0.4086 (18)−0.022 (3)0.082 (12)0.57
O7'0.322 (5)0.363 (3)0.081 (9)0.076 (13)0.43
O8'0.143 (7)0.415 (3)−0.028 (4)0.101 (13)0.43
C10.3547 (4)0.6219 (3)0.3635 (3)0.0316 (10)
C20.4679 (4)0.6027 (2)0.3540 (3)0.0281 (10)
C30.5099 (3)0.5233 (2)0.3491 (3)0.0253 (9)
C40.6111 (4)0.5162 (3)0.3307 (4)0.0329 (11)
H40.63910.46490.32450.039*
C50.6689 (4)0.5847 (3)0.3218 (4)0.0373 (11)
C60.6330 (4)0.6620 (3)0.3304 (4)0.0405 (12)
H60.67460.70740.32560.049*
C70.5320 (4)0.6699 (3)0.3468 (4)0.0348 (11)
H70.50610.72180.35310.042*
C80.4971 (4)0.3808 (2)0.3830 (3)0.0274 (10)
C90.4166 (4)0.3140 (2)0.3888 (3)0.0283 (10)
C100.2293 (4)0.2683 (3)0.3600 (5)0.0467 (14)
H10A0.26960.22910.41440.056*
H10B0.20470.24040.29390.056*
C110.1226 (4)0.2997 (3)0.3737 (5)0.0480 (13)
H11A0.06990.25460.36590.058*
H11B0.14660.32080.44350.058*
C120.0582 (4)0.3660 (3)0.2967 (4)0.0430 (12)
H12A0.05170.34960.22860.052*
H12B−0.02010.36980.29370.052*
C130.0402 (4)0.5036 (3)0.2348 (4)0.0489 (14)
H13A0.03740.48340.17000.073*
H13B0.07380.55720.24720.073*
H13C−0.03730.50610.23220.073*
C140.1120 (5)0.4791 (4)0.4192 (5)0.0569 (15)
H14A0.14970.53130.43530.085*
H14B0.15300.44130.47380.085*
H14C0.03320.48440.41260.085*
C150.8213 (5)0.1484 (3)0.4798 (5)0.0523 (14)
H15A0.90490.14040.50880.063*
H15B0.78810.12200.41250.063*
C160.7717 (4)0.1115 (3)0.5501 (5)0.0500 (14)
H16A0.78230.05280.55240.060*
H16B0.81270.13260.61990.060*
C170.7999 (6)0.2666 (4)0.3708 (6)0.077 (2)
H17A0.77370.32210.35850.115*
H17B0.75100.23320.31390.115*
H17C0.87870.26340.37720.115*
C180.8777 (4)0.2825 (4)0.5567 (5)0.0631 (17)
H18A0.95460.27550.55930.095*
H18B0.87530.26220.61970.095*
H18C0.85770.33930.54930.095*
C190.5771 (4)0.0761 (3)0.4248 (4)0.0449 (13)
H19A0.60190.08300.36940.067*
H19B0.49610.08970.40070.067*
H19C0.58870.02050.44780.067*
C200.6059 (5)0.1191 (3)0.5964 (4)0.0523 (14)
H20A0.62080.06400.62120.078*
H20B0.52390.12980.57000.078*
H20C0.64670.15590.65230.078*
U11U22U33U12U13U23
Cu10.0262 (3)0.0263 (3)0.0462 (4)0.0015 (2)0.0225 (3)−0.0014 (2)
Cu20.0285 (3)0.0249 (3)0.0457 (4)0.0043 (2)0.0227 (3)0.0056 (2)
Cl10.0542 (9)0.0542 (8)0.1007 (12)0.0039 (7)0.0617 (8)0.0139 (8)
Cl20.0699 (9)0.0377 (7)0.0526 (8)−0.0002 (6)0.0430 (7)0.0007 (6)
N10.0249 (19)0.0217 (18)0.031 (2)0.0019 (15)0.0163 (16)0.0022 (15)
N20.027 (2)0.0250 (18)0.050 (2)−0.0018 (16)0.0230 (18)0.0045 (17)
N30.0229 (19)0.038 (2)0.041 (2)0.0017 (16)0.0203 (17)−0.0030 (17)
N40.032 (2)0.034 (2)0.054 (3)0.0090 (17)0.026 (2)0.0059 (19)
N50.039 (2)0.0243 (18)0.036 (2)0.0013 (17)0.0172 (18)0.0004 (16)
O10.0350 (19)0.0281 (17)0.087 (3)0.0014 (15)0.0353 (18)−0.0093 (17)
O20.056 (2)0.0250 (16)0.057 (2)0.0041 (15)0.0403 (18)−0.0023 (15)
O30.0270 (17)0.0291 (16)0.059 (2)0.0048 (13)0.0256 (15)0.0134 (15)
O40.0277 (17)0.0231 (16)0.055 (2)0.0021 (13)0.0191 (15)0.0086 (14)
O50.081 (3)0.046 (2)0.051 (2)0.0051 (19)0.039 (2)−0.0035 (17)
O60.088 (3)0.060 (3)0.100 (4)−0.019 (2)0.058 (3)−0.002 (2)
O70.081 (9)0.068 (7)0.082 (15)0.019 (7)0.061 (11)0.005 (10)
O80.16 (3)0.049 (8)0.048 (14)−0.002 (12)0.056 (16)0.000 (7)
O7'0.074 (16)0.071 (12)0.11 (4)−0.003 (10)0.07 (2)−0.012 (19)
O8'0.13 (3)0.082 (14)0.055 (13)0.019 (15)−0.002 (14)0.016 (9)
C10.042 (3)0.030 (2)0.032 (3)0.001 (2)0.025 (2)0.000 (2)
C20.036 (3)0.030 (2)0.026 (2)0.000 (2)0.020 (2)−0.0025 (18)
C30.029 (2)0.026 (2)0.027 (2)−0.0018 (18)0.0173 (19)0.0029 (18)
C40.036 (3)0.030 (2)0.042 (3)0.005 (2)0.025 (2)0.009 (2)
C50.036 (3)0.043 (3)0.046 (3)0.002 (2)0.030 (2)0.009 (2)
C60.048 (3)0.035 (3)0.050 (3)−0.005 (2)0.033 (3)0.006 (2)
C70.044 (3)0.025 (2)0.046 (3)−0.001 (2)0.028 (2)0.000 (2)
C80.029 (2)0.028 (2)0.031 (2)0.0000 (19)0.019 (2)0.0015 (18)
C90.030 (2)0.028 (2)0.036 (3)0.0021 (19)0.022 (2)0.0031 (19)
C100.035 (3)0.037 (3)0.077 (4)−0.007 (2)0.031 (3)0.006 (3)
C110.036 (3)0.047 (3)0.072 (4)−0.006 (2)0.032 (3)0.007 (3)
C120.024 (2)0.050 (3)0.057 (3)−0.004 (2)0.019 (2)−0.003 (3)
C130.033 (3)0.056 (3)0.065 (4)0.012 (2)0.027 (3)0.015 (3)
C140.056 (4)0.070 (4)0.058 (4)0.004 (3)0.038 (3)−0.012 (3)
C150.043 (3)0.042 (3)0.081 (4)0.009 (2)0.035 (3)−0.006 (3)
C160.039 (3)0.035 (3)0.069 (4)0.009 (2)0.015 (3)0.010 (3)
C170.066 (4)0.095 (5)0.094 (5)0.017 (4)0.059 (4)0.027 (4)
C180.036 (3)0.055 (3)0.102 (5)−0.003 (3)0.032 (3)−0.015 (3)
C190.049 (3)0.033 (3)0.052 (3)−0.008 (2)0.020 (3)−0.004 (2)
C200.080 (4)0.034 (3)0.058 (4)0.001 (3)0.043 (3)0.007 (2)
Cu1—O11.920 (3)C4—C51.373 (6)
Cu1—N21.953 (3)C4—H40.9300
Cu1—N11.986 (3)C5—C61.368 (6)
Cu1—N32.066 (3)C6—C71.385 (7)
Cu1—O52.518 (4)C6—H60.9300
Cu2—O41.944 (3)C7—H70.9300
Cu2—O31.987 (3)C8—C91.516 (6)
Cu2—N52.020 (3)C10—C111.521 (7)
Cu2—N42.039 (4)C10—H10A0.9700
Cu2—O2i2.281 (3)C10—H10B0.9700
Cl1—C51.750 (5)C11—C121.519 (7)
Cl2—O81.36 (4)C11—H11A0.9700
Cl2—O7'1.37 (4)C11—H11B0.9700
Cl2—O61.417 (4)C12—H12A0.9700
Cl2—O51.439 (4)C12—H12B0.9700
Cl2—O8'1.47 (4)C13—H13A0.9600
Cl2—O71.48 (3)C13—H13B0.9600
N1—C81.313 (5)C13—H13C0.9600
N1—C31.416 (5)C14—H14A0.9600
N2—C91.288 (5)C14—H14B0.9600
N2—C101.467 (5)C14—H14C0.9600
N3—C131.476 (6)C15—C161.497 (8)
N3—C121.490 (6)C15—H15A0.9700
N3—C141.492 (6)C15—H15B0.9700
N4—C181.468 (7)C16—H16A0.9700
N4—C171.482 (7)C16—H16B0.9700
N4—C151.493 (6)C17—H17A0.9600
N5—C201.475 (6)C17—H17B0.9600
N5—C161.478 (6)C17—H17C0.9600
N5—C191.490 (6)C18—H18A0.9600
O1—C11.266 (5)C18—H18B0.9600
O2—C11.247 (5)C18—H18C0.9600
O2—Cu2i2.281 (3)C19—H19A0.9600
O3—C81.275 (5)C19—H19B0.9600
O4—C91.278 (5)C19—H19C0.9600
C1—C21.517 (6)C20—H20A0.9600
C2—C71.394 (6)C20—H20B0.9600
C2—C31.418 (6)C20—H20C0.9600
C3—C41.404 (6)
O1—Cu1—N2164.01 (16)C5—C6—H6121.3
O1—Cu1—N191.51 (13)C7—C6—H6121.3
N2—Cu1—N184.45 (13)C6—C7—C2122.3 (4)
O1—Cu1—N387.77 (13)C6—C7—H7118.8
N2—Cu1—N395.33 (14)C2—C7—H7118.8
N1—Cu1—N3176.48 (14)O3—C8—N1129.5 (4)
O1—Cu1—O593.01 (14)O3—C8—C9115.4 (4)
N2—Cu1—O5102.50 (14)N1—C8—C9115.1 (4)
N1—Cu1—O591.09 (14)O4—C9—N2127.1 (4)
N3—Cu1—O592.39 (14)O4—C9—C8116.4 (4)
O4—Cu2—O384.08 (11)N2—C9—C8116.4 (4)
O4—Cu2—N591.89 (13)N2—C10—C11112.0 (4)
O3—Cu2—N5174.85 (13)N2—C10—H10A109.2
O4—Cu2—N4162.63 (15)C11—C10—H10A109.2
O3—Cu2—N495.52 (13)N2—C10—H10B109.2
N5—Cu2—N487.36 (15)C11—C10—H10B109.2
O4—Cu2—O2i95.00 (13)H10A—C10—H10B107.9
O3—Cu2—O2i87.23 (12)C12—C11—C10113.2 (4)
N5—Cu2—O2i96.35 (13)C12—C11—H11A108.9
N4—Cu2—O2i102.33 (14)C10—C11—H11A108.9
O8—Cl2—O7'86 (2)C12—C11—H11B108.9
O8—Cl2—O6118 (2)C10—C11—H11B108.9
O7'—Cl2—O6113 (3)H11A—C11—H11B107.7
O8—Cl2—O5112.9 (13)N3—C12—C11115.8 (4)
O7'—Cl2—O5114 (3)N3—C12—H12A108.3
O6—Cl2—O5110.6 (3)C11—C12—H12A108.3
O7'—Cl2—O8'109.0 (19)N3—C12—H12B108.3
O6—Cl2—O8'104 (3)C11—C12—H12B108.3
O5—Cl2—O8'105 (3)H12A—C12—H12B107.4
O8—Cl2—O7107.8 (17)N3—C13—H13A109.5
O6—Cl2—O7103.5 (14)N3—C13—H13B109.5
O5—Cl2—O7102.8 (17)H13A—C13—H13B109.5
O8'—Cl2—O7131 (3)N3—C13—H13C109.5
C8—N1—C3123.6 (4)H13A—C13—H13C109.5
C8—N1—Cu1111.3 (3)H13B—C13—H13C109.5
C3—N1—Cu1125.0 (3)N3—C14—H14A109.5
C9—N2—C10116.6 (4)N3—C14—H14B109.5
C9—N2—Cu1112.5 (3)H14A—C14—H14B109.5
C10—N2—Cu1130.9 (3)N3—C14—H14C109.5
C13—N3—C12107.9 (4)H14A—C14—H14C109.5
C13—N3—C14108.9 (4)H14B—C14—H14C109.5
C12—N3—C14109.6 (4)N4—C15—C16109.4 (4)
C13—N3—Cu1110.2 (3)N4—C15—H15A109.8
C12—N3—Cu1113.5 (3)C16—C15—H15A109.8
C14—N3—Cu1106.8 (3)N4—C15—H15B109.8
C18—N4—C17109.7 (5)C16—C15—H15B109.8
C18—N4—C15110.3 (4)H15A—C15—H15B108.3
C17—N4—C15109.0 (4)N5—C16—C15110.3 (4)
C18—N4—Cu2110.8 (3)N5—C16—H16A109.6
C17—N4—Cu2111.6 (3)C15—C16—H16A109.6
C15—N4—Cu2105.3 (3)N5—C16—H16B109.6
C20—N5—C16110.6 (4)C15—C16—H16B109.6
C20—N5—C19108.2 (4)H16A—C16—H16B108.1
C16—N5—C19110.3 (4)N4—C17—H17A109.5
C20—N5—Cu2112.6 (3)N4—C17—H17B109.5
C16—N5—Cu2105.6 (3)H17A—C17—H17B109.5
C19—N5—Cu2109.5 (3)N4—C17—H17C109.5
C1—O1—Cu1132.6 (3)H17A—C17—H17C109.5
C1—O2—Cu2i128.7 (3)H17B—C17—H17C109.5
C8—O3—Cu2110.4 (3)N4—C18—H18A109.5
C9—O4—Cu2111.3 (3)N4—C18—H18B109.5
Cl2—O5—Cu1124.0 (2)H18A—C18—H18B109.5
O2—C1—O1121.7 (4)N4—C18—H18C109.5
O2—C1—C2117.6 (4)H18A—C18—H18C109.5
O1—C1—C2120.6 (4)H18B—C18—H18C109.5
C7—C2—C3119.1 (4)N5—C19—H19A109.5
C7—C2—C1115.7 (4)N5—C19—H19B109.5
C3—C2—C1125.2 (4)H19A—C19—H19B109.5
C4—C3—N1121.3 (4)N5—C19—H19C109.5
C4—C3—C2117.9 (4)H19A—C19—H19C109.5
N1—C3—C2120.8 (4)H19B—C19—H19C109.5
C5—C4—C3120.2 (4)N5—C20—H20A109.5
C5—C4—H4119.9N5—C20—H20B109.5
C3—C4—H4119.9H20A—C20—H20B109.5
C6—C5—C4123.0 (4)N5—C20—H20C109.5
C6—C5—Cl1119.5 (4)H20A—C20—H20C109.5
C4—C5—Cl1117.5 (4)H20B—C20—H20C109.5
C5—C6—C7117.4 (4)
D—H···AD—HH···AD···AD—H···A
C6—H6···O7ii0.932.583.26 (3)129
C16—H16A···O8iii0.972.463.41 (3)168
C20—H20C···O2i0.962.543.139 (6)121
C4—H4···O30.932.212.799 (5)120
C7—H7···O20.932.362.714 (6)102
C13—H13A···O50.962.553.158 (7)121
C13—H13B···O10.962.392.960 (6)118
C14—H14A···O10.962.463.026 (7)117
C17—H17A···O30.962.563.103 (7)116
C19—H19B···O40.962.583.084 (6)113
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O7i0.932.583.26 (3)129
C16—H16A⋯O8ii0.972.463.41 (3)168
C20—H20C⋯O2iii0.962.543.139 (6)121

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, crystal structure, and magnetic properties of ([Cu(oxbe)]Mn(H(2)O)[Cu(oxbe)(DMF)])(n).nDMF.nH(2)O: From dissymmetrical mononuclear entities to a 3D heterometallic supramolecular coordination polymer.

Authors:  Shuang-Quan Zang; Ruo-Jie Tao; Qing-Lun Wang; Ning-Hai Hu; Yan-Xiang Cheng; Jing-Yang Niu; Dai-Zheng Liao
Journal:  Inorg Chem       Date:  2003-02-10       Impact factor: 5.165

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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