Literature DB >> 21754292

Diaqua-[5,5'-dicarb-oxy-2,2'-(propane-1,3-di-yl)bis-(1H-imidazole-4-carboxyl-ato)]manganese(II).

Huai-Xia Yang, Xiaoli Zhou, Guanghua Jin, Xiang-Ru Meng.   

Abstract

The complex mol-ecule of the title compound, [Mn(C(13)H(10)N(4)O(8))(H(2)O)(2)] or [Mn(H(4)pbidc)(H(2)O)(2)] (H(6)pbidc = 2,2'-(propane-1,3-di-yl)bis-(1H-imidazole-4,5-dicarb-oxy-lic acid), has 2 symmetry with the twofold rotation axis running through the Mn(2+) cation and the central C atom of the propanediyl unit. The cation is six-coordinated by two N atoms and two O atoms from one H(4)pbidc(2-) anion and two water O atoms in a considerably distorted octa-hedral coordination. In the crystal, adjacent mol-ecules are linked through O-H⋯O and N-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754292      PMCID: PMC3089289          DOI: 10.1107/S1600536811012566

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes based on 1H-imidazole-4,5-dicarb­oxy­lic acid, see: Ghosh et al. (2009 ▶); Liu et al. (2008 ▶); Sun & Yang (2007 ▶).

Experimental

Crystal data

[Mn(C13H10N4O8)(H2O)2] M = 441.22 Monoclinic, a = 15.620 (3) Å b = 8.5310 (17) Å c = 12.739 (3) Å β = 97.07 (3)° V = 1684.7 (6) Å3 Z = 4 Mo Kα radiation μ = 0.85 mm−1 T = 293 K 0.23 × 0.21 × 0.18 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006 ▶) T min = 0.828, T max = 0.862 3426 measured reflections 1464 independent reflections 1265 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.090 S = 1.09 1464 reflections 128 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.45 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811012566/wm2475sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811012566/wm2475Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C13H10N4O8)(H2O)2]F(000) = 900
Mr = 441.22Dx = 1.740 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 2738 reflections
a = 15.620 (3) Åθ = 2.6–27.9°
b = 8.5310 (17) ŵ = 0.85 mm1
c = 12.739 (3) ÅT = 293 K
β = 97.07 (3)°Prism, light yellow
V = 1684.7 (6) Å30.23 × 0.21 × 0.18 mm
Z = 4
Rigaku Saturn diffractometer1464 independent reflections
Radiation source: fine-focus sealed tube1265 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 28.5714 pixels mm-1θmax = 25.0°, θmin = 2.6°
ω scansh = −17→18
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2006)k = −10→8
Tmin = 0.828, Tmax = 0.862l = −15→12
3426 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0405P)2 + 1.7694P] where P = (Fo2 + 2Fc2)/3
1464 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.00000.22580 (7)0.25000.0249 (2)
N10.08997 (14)0.4109 (3)0.32272 (18)0.0273 (5)
N20.16454 (14)0.5985 (3)0.40995 (19)0.0308 (6)
H2A0.17670.68760.43970.037*
O10.13833 (12)0.1209 (2)0.26815 (16)0.0336 (5)
O20.27378 (12)0.1518 (2)0.34234 (17)0.0382 (5)
O30.35729 (12)0.3642 (2)0.44866 (16)0.0336 (5)
H30.32810.29370.41330.040*
O40.34141 (12)0.6152 (2)0.48617 (17)0.0370 (5)
O50.00284 (13)0.1299 (3)0.09807 (16)0.0466 (6)
H1W−0.03900.13140.04870.056*
H2W0.04600.12160.06370.056*
C10.19523 (18)0.2024 (3)0.3170 (2)0.0278 (6)
C20.17401 (16)0.3615 (3)0.3491 (2)0.0242 (6)
C30.22101 (16)0.4777 (3)0.4038 (2)0.0258 (6)
C40.31248 (17)0.4881 (3)0.4495 (2)0.0269 (6)
C50.08645 (17)0.5546 (3)0.3616 (2)0.0297 (7)
C60.00932 (19)0.6586 (4)0.3507 (3)0.0462 (9)
H6A0.01300.72850.41110.055*
H6B−0.04200.59470.35160.055*
C70.00000.7559 (5)0.25000.0562 (15)
H7A−0.05090.82140.24800.067*
U11U22U33U12U13U23
Mn10.0183 (3)0.0268 (3)0.0276 (3)0.000−0.0048 (2)0.000
N10.0177 (11)0.0278 (12)0.0344 (13)0.0007 (9)−0.0048 (10)−0.0048 (10)
N20.0222 (12)0.0279 (12)0.0396 (14)−0.0003 (10)−0.0068 (11)−0.0085 (10)
O10.0237 (11)0.0333 (11)0.0416 (12)0.0003 (9)−0.0051 (9)−0.0114 (9)
O20.0227 (11)0.0373 (12)0.0515 (13)0.0084 (9)−0.0078 (10)−0.0074 (10)
O30.0208 (10)0.0361 (12)0.0408 (11)−0.0011 (9)−0.0094 (9)−0.0059 (9)
O40.0236 (10)0.0357 (12)0.0490 (13)−0.0055 (9)−0.0062 (10)−0.0099 (10)
O50.0241 (11)0.0804 (17)0.0328 (12)0.0111 (11)−0.0070 (10)−0.0179 (11)
C10.0238 (15)0.0319 (15)0.0268 (14)0.0015 (12)−0.0008 (12)−0.0008 (12)
C20.0174 (13)0.0281 (14)0.0262 (14)0.0001 (11)−0.0008 (12)0.0002 (11)
C30.0191 (14)0.0291 (14)0.0278 (14)−0.0010 (11)−0.0028 (11)−0.0012 (12)
C40.0206 (14)0.0331 (16)0.0261 (14)−0.0018 (12)−0.0002 (12)0.0023 (12)
C50.0189 (14)0.0298 (15)0.0381 (16)0.0004 (12)−0.0054 (13)−0.0094 (13)
C60.0235 (16)0.0419 (18)0.069 (2)0.0065 (14)−0.0091 (16)−0.0271 (17)
C70.029 (2)0.023 (2)0.109 (5)0.000−0.020 (3)0.000
Mn1—O52.107 (2)O3—H30.8500
Mn1—O5i2.107 (2)O4—C41.243 (3)
Mn1—N12.237 (2)O5—H1W0.8501
Mn1—N1i2.237 (2)O5—H2W0.8500
Mn1—O12.3236 (19)C1—C21.467 (4)
Mn1—O1i2.3236 (19)C2—C31.371 (4)
N1—C51.326 (3)C3—C41.478 (4)
N1—C21.380 (3)C5—C61.489 (4)
N2—C51.350 (3)C6—C71.520 (4)
N2—C31.365 (3)C6—H6A0.9700
N2—H2A0.8600C6—H6B0.9700
O1—C11.235 (3)C7—C6i1.520 (4)
O2—C11.303 (3)C7—H7A0.9700
O3—C41.269 (3)
O5—Mn1—O5i134.29 (13)H1W—O5—H2W101.9
O5—Mn1—N1124.84 (9)O1—C1—O2122.4 (3)
O5i—Mn1—N188.68 (8)O1—C1—C2119.2 (2)
O5—Mn1—N1i88.68 (8)O2—C1—C2118.4 (2)
O5i—Mn1—N1i124.84 (9)C3—C2—N1109.7 (2)
N1—Mn1—N1i90.22 (11)C3—C2—C1133.2 (2)
O5—Mn1—O179.48 (8)N1—C2—C1117.1 (2)
O5i—Mn1—O183.31 (8)N2—C3—C2105.4 (2)
N1—Mn1—O172.64 (7)N2—C3—C4122.2 (2)
N1i—Mn1—O1147.34 (8)C2—C3—C4132.4 (2)
O5—Mn1—O1i83.31 (8)O4—C4—O3123.7 (2)
O5i—Mn1—O1i79.48 (8)O4—C4—C3119.3 (2)
N1—Mn1—O1i147.34 (8)O3—C4—C3117.0 (2)
N1i—Mn1—O1i72.64 (7)N1—C5—N2110.5 (2)
O1—Mn1—O1i134.71 (10)N1—C5—C6125.9 (2)
C5—N1—C2105.8 (2)N2—C5—C6123.5 (2)
C5—N1—Mn1138.97 (18)C5—C6—C7113.4 (3)
C2—N1—Mn1114.56 (17)C5—C6—H6A108.9
C5—N2—C3108.6 (2)C7—C6—H6A108.9
C5—N2—H2A125.7C5—C6—H6B108.9
C3—N2—H2A125.7C7—C6—H6B108.9
C1—O1—Mn1115.86 (17)H6A—C6—H6B107.7
C4—O3—H3109.4C6i—C7—C6113.7 (3)
Mn1—O5—H1W124.9C6i—C7—H7A107.4
Mn1—O5—H2W127.8C6—C7—H7A109.3
O5—Mn1—N1—C5121.0 (3)O2—C1—C2—C3−0.1 (5)
O5i—Mn1—N1—C5−92.4 (3)O1—C1—C2—N10.3 (4)
N1i—Mn1—N1—C532.5 (3)O2—C1—C2—N1−178.9 (2)
O1—Mn1—N1—C5−175.8 (3)C5—N2—C3—C20.6 (3)
O1i—Mn1—N1—C5−24.3 (4)C5—N2—C3—C4−179.9 (2)
O5—Mn1—N1—C2−69.7 (2)N1—C2—C3—N2−0.2 (3)
O5i—Mn1—N1—C276.92 (19)C1—C2—C3—N2−179.0 (3)
N1i—Mn1—N1—C2−158.2 (2)N1—C2—C3—C4−179.5 (3)
O1—Mn1—N1—C2−6.49 (17)C1—C2—C3—C41.6 (5)
O1i—Mn1—N1—C2144.92 (17)N2—C3—C4—O4−6.9 (4)
O5—Mn1—O1—C1138.8 (2)C2—C3—C4—O4172.4 (3)
O5i—Mn1—O1—C1−83.7 (2)N2—C3—C4—O3173.2 (3)
N1—Mn1—O1—C17.01 (19)C2—C3—C4—O3−7.5 (4)
N1i—Mn1—O1—C168.3 (3)C2—N1—C5—N20.8 (3)
O1i—Mn1—O1—C1−151.7 (2)Mn1—N1—C5—N2170.6 (2)
Mn1—O1—C1—O2172.9 (2)C2—N1—C5—C6178.2 (3)
Mn1—O1—C1—C2−6.3 (3)Mn1—N1—C5—C6−11.9 (5)
C5—N1—C2—C3−0.4 (3)C3—N2—C5—N1−0.9 (3)
Mn1—N1—C2—C3−173.07 (18)C3—N2—C5—C6−178.5 (3)
C5—N1—C2—C1178.7 (2)N1—C5—C6—C7−87.0 (4)
Mn1—N1—C2—C16.0 (3)N2—C5—C6—C790.1 (4)
O1—C1—C2—C3179.1 (3)C5—C6—C7—C6i60.5 (2)
D—H···AD—HH···AD···AD—H···A
O5—H2W···O4ii0.851.942.780 (3)168
O5—H1W···O3iii0.851.932.780 (3)174
N2—H2A···O4iv0.861.972.785 (3)159
O3—H3···O20.851.682.527 (3)178
Table 1

Selected bond lengths (Å)

Mn1—O52.107 (2)
Mn1—N12.237 (2)
Mn1—O12.3236 (19)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H2W⋯O4i0.851.942.780 (3)168
O5—H1W⋯O3ii0.851.932.780 (3)174
N2—H2A⋯O4iii0.861.972.785 (3)159
O3—H3⋯O20.851.682.527 (3)178

Symmetry codes: (i) ; (ii) ; (iii) .

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