Literature DB >> 21754242

Ammonium 2-amino-pyrazine-3-carboxyl-ate.

Martin Lutz1, Arjen J Jakobi.   

Abstract

The title compound NH(4) (+)·C(5)H(4)N(3)O(2) (-) crystallizes with two formula units in the asymmetric unit. In each anion, the carboxyl-ate is deprotonated and the planar amino group [angle sums of 359 (3) and 355 (3)° at N] remains protonated. In the crystal, the cations and anions are bridged by N-H⋯O and N-H⋯N hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754242      PMCID: PMC3099982          DOI: 10.1107/S1600536811010865

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the free acid, see: Dobson & Gerkin (1996 ▶); Ptasiewicz-Bak & Leciejewicz (1997 ▶). For the metal complex with nickel, see: Ptasiewicz-Bak & Leciejewicz (1999 ▶). For the coordination chemistry of 2-pyrazine­carb­oxy­lic acid, see: Ptasiewicz-Bak et al. (1995 ▶); Ellsworth & zur Loye (2008 ▶). In the present study a half-normal probability plot (Abrahams & Keve, 1971 ▶), a quaternion fit (Mackay, 1984 ▶) and rigid-body analysis (Schomaker & Trueblood, 1998 ▶) have been used.

Experimental

Crystal data

NH4 +·C5H4N3O2 − M = 156.15 Orthorhombic, a = 12.5066 (6) Å b = 3.8833 (2) Å c = 27.9659 (14) Å V = 1358.22 (12) Å3 Z = 8 Mo Kα radiation μ = 0.12 mm−1 T = 150 K 0.40 × 0.19 × 0.09 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.70, T max = 0.75 16898 measured reflections 1580 independent reflections 1540 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.072 S = 1.05 1580 reflections 247 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: manual editing of SHELXL cif file. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811010865/zl2357sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010865/zl2357Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
NH4+·C5H4N3O2F(000) = 656
Mr = 156.15Dx = 1.527 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 9416 reflections
a = 12.5066 (6) Åθ = 2.9–27.5°
b = 3.8833 (2) ŵ = 0.12 mm1
c = 27.9659 (14) ÅT = 150 K
V = 1358.22 (12) Å3Plate, colourless
Z = 80.40 × 0.19 × 0.09 mm
Bruker Kappa APEXII diffractometer1580 independent reflections
Radiation source: fine-focus sealed tube1540 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 27.5°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −16→15
Tmin = 0.70, Tmax = 0.75k = −4→5
16898 measured reflectionsl = −36→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: difference Fourier map
wR(F2) = 0.072H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0562P)2 + 0.1369P] where P = (Fo2 + 2Fc2)/3
1580 reflections(Δ/σ)max = 0.001
247 parametersΔρmax = 0.33 e Å3
1 restraintΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O110.42965 (10)0.7629 (3)0.54691 (4)0.0224 (3)
O210.30439 (11)0.9858 (4)0.59468 (5)0.0238 (3)
N110.55372 (12)0.5954 (4)0.62042 (5)0.0188 (3)
N210.50221 (12)0.7550 (4)0.71454 (5)0.0200 (3)
N310.34689 (13)1.0186 (4)0.69017 (5)0.0224 (3)
H31A0.338 (2)1.088 (7)0.7212 (11)0.031 (6)*
H31B0.304 (2)1.100 (7)0.6670 (10)0.032 (7)*
C110.61962 (15)0.5125 (5)0.65636 (6)0.0211 (3)
H110.68540.39960.64980.025*
C210.59216 (14)0.5908 (5)0.70302 (6)0.0209 (3)
H210.63950.52460.72790.025*
C310.43627 (13)0.8473 (4)0.67848 (6)0.0164 (3)
C410.46320 (13)0.7604 (4)0.63013 (6)0.0156 (3)
C510.39253 (13)0.8432 (4)0.58752 (6)0.0174 (3)
O120.14633 (10)0.3689 (4)0.46142 (4)0.0245 (3)
O220.02147 (11)0.5588 (4)0.41050 (5)0.0281 (3)
N120.26120 (11)0.1003 (4)0.39032 (5)0.0188 (3)
N220.21177 (12)0.2151 (4)0.29449 (5)0.0207 (3)
N320.05731 (12)0.4997 (4)0.31616 (6)0.0232 (3)
H32A0.0512 (19)0.574 (6)0.2864 (10)0.026 (6)*
H32B0.020 (2)0.611 (7)0.3371 (10)0.035 (7)*
C120.32517 (14)−0.0150 (5)0.35539 (7)0.0211 (3)
H120.3883−0.13860.36320.025*
C220.29979 (14)0.0451 (5)0.30788 (7)0.0216 (4)
H220.3469−0.03790.28380.026*
C320.14642 (13)0.3310 (4)0.32951 (6)0.0175 (3)
C420.17362 (13)0.2711 (4)0.37884 (5)0.0163 (3)
C520.10825 (13)0.4099 (4)0.42027 (6)0.0189 (3)
N30.12272 (12)0.8079 (4)0.53838 (5)0.0201 (3)
H3A0.133 (2)0.702 (7)0.5094 (11)0.032 (6)*
H3B0.189 (2)0.888 (7)0.5486 (10)0.032 (6)*
H3C0.086 (2)0.660 (7)0.5602 (11)0.037 (6)*
H3D0.079 (2)0.986 (7)0.5356 (9)0.034 (7)*
N40.37274 (14)0.2716 (5)0.47857 (6)0.0249 (3)
H4A0.312 (3)0.249 (7)0.4640 (11)0.043 (8)*
H4B0.380 (2)0.443 (10)0.5025 (14)0.057 (9)*
H4C0.388 (2)0.102 (8)0.4961 (12)0.043 (8)*
H4D0.420 (2)0.315 (7)0.4564 (10)0.032 (6)*
U11U22U33U12U13U23
O110.0230 (6)0.0326 (7)0.0115 (5)−0.0014 (5)−0.0003 (4)0.0001 (5)
O210.0174 (6)0.0355 (7)0.0184 (6)0.0022 (5)−0.0026 (4)−0.0009 (5)
N110.0193 (7)0.0201 (7)0.0169 (7)0.0002 (5)0.0015 (5)0.0005 (5)
N210.0234 (7)0.0226 (7)0.0140 (6)−0.0029 (6)−0.0012 (6)0.0007 (5)
N310.0204 (7)0.0308 (8)0.0160 (7)0.0036 (6)−0.0001 (5)−0.0042 (6)
C110.0186 (8)0.0222 (8)0.0225 (8)0.0031 (6)−0.0017 (6)0.0005 (6)
C210.0224 (8)0.0214 (8)0.0189 (8)−0.0019 (6)−0.0049 (6)0.0019 (7)
C310.0190 (8)0.0168 (7)0.0133 (7)−0.0055 (6)−0.0001 (5)0.0000 (6)
C410.0158 (7)0.0179 (7)0.0131 (7)−0.0029 (6)0.0006 (6)0.0006 (5)
C510.0178 (8)0.0201 (7)0.0145 (7)−0.0060 (6)−0.0006 (5)0.0014 (6)
O120.0280 (6)0.0322 (7)0.0133 (5)0.0041 (5)0.0000 (5)−0.0021 (5)
O220.0226 (6)0.0423 (8)0.0193 (6)0.0091 (6)0.0021 (5)−0.0012 (6)
N120.0183 (6)0.0220 (7)0.0162 (6)−0.0019 (5)−0.0004 (5)−0.0018 (5)
N220.0234 (7)0.0237 (7)0.0151 (6)−0.0040 (6)0.0019 (5)−0.0016 (5)
N320.0227 (7)0.0325 (8)0.0144 (7)0.0024 (6)−0.0005 (6)0.0043 (6)
C120.0190 (8)0.0224 (9)0.0220 (8)0.0008 (6)0.0014 (6)−0.0026 (7)
C220.0228 (8)0.0217 (8)0.0203 (8)−0.0029 (6)0.0055 (6)−0.0050 (6)
C320.0187 (8)0.0192 (7)0.0146 (7)−0.0054 (6)−0.0004 (6)−0.0004 (6)
C420.0176 (7)0.0187 (8)0.0126 (7)−0.0032 (6)0.0006 (6)−0.0012 (6)
C520.0198 (8)0.0211 (8)0.0158 (7)−0.0014 (6)0.0025 (6)−0.0017 (6)
N30.0196 (7)0.0230 (7)0.0178 (7)−0.0004 (6)−0.0007 (5)−0.0002 (6)
N40.0227 (7)0.0348 (9)0.0174 (7)−0.0044 (6)−0.0042 (6)0.0037 (7)
O11—C511.266 (2)N22—C221.337 (2)
O21—C511.250 (2)N22—C321.353 (2)
N11—C411.329 (2)N32—C321.346 (2)
N11—C111.339 (2)N32—H32A0.88 (3)
N21—C211.333 (2)N32—H32B0.86 (3)
N21—C311.351 (2)C12—C221.386 (3)
N31—C311.341 (2)C12—H120.9500
N31—H31A0.92 (3)C22—H220.9500
N31—H31B0.90 (3)C32—C421.440 (2)
C11—C211.383 (2)C42—C521.517 (2)
C11—H110.9500N3—H3A0.92 (3)
C21—H210.9500N3—H3B0.93 (3)
C31—C411.434 (2)N3—H3C0.96 (3)
C41—C511.518 (2)N3—H3D0.89 (3)
O12—C521.256 (2)N4—H4A0.86 (3)
O22—C521.260 (2)N4—H4B0.95 (4)
N12—C421.320 (2)N4—H4C0.84 (3)
N12—C121.340 (2)N4—H4D0.87 (3)
C41—N11—C11119.14 (15)N12—C12—H12119.8
C21—N21—C31117.49 (15)C22—C12—H12119.8
C31—N31—H31A118.4 (17)N22—C22—C12122.70 (16)
C31—N31—H31B119.6 (17)N22—C22—H22118.7
H31A—N31—H31B121 (2)C12—C22—H22118.7
N11—C11—C21120.16 (16)N32—C32—N22117.48 (15)
N11—C11—H11119.9N32—C32—C42122.70 (16)
C21—C11—H11119.9N22—C32—C42119.81 (15)
N21—C21—C11122.88 (16)N12—C42—C32120.68 (15)
N21—C21—H21118.6N12—C42—C52116.10 (14)
C11—C21—H21118.6C32—C42—C52123.17 (15)
N31—C31—N21117.27 (15)O12—C52—O22125.71 (15)
N31—C31—C41122.85 (15)O12—C52—C42116.79 (14)
N21—C31—C41119.88 (15)O22—C52—C42117.50 (15)
N11—C41—C31120.42 (15)H3A—N3—H3B107 (2)
N11—C41—C51115.96 (14)H3A—N3—H3C111 (2)
C31—C41—C51123.62 (14)H3B—N3—H3C116 (2)
O21—C51—O11125.19 (15)H3A—N3—H3D111 (2)
O21—C51—C41118.80 (14)H3B—N3—H3D108 (2)
O11—C51—C41116.01 (14)H3C—N3—H3D103 (2)
C42—N12—C12119.08 (15)H4A—N4—H4B119 (3)
C22—N22—C32117.32 (15)H4A—N4—H4C113 (3)
C32—N32—H32A119.4 (16)H4B—N4—H4C97 (3)
C32—N32—H32B119.9 (18)H4A—N4—H4D106 (3)
H32A—N32—H32B116 (2)H4B—N4—H4D107 (3)
N12—C12—C22120.40 (16)H4C—N4—H4D114 (3)
C41—N11—C11—C211.6 (3)C42—N12—C12—C220.1 (2)
C31—N21—C21—C11−0.2 (3)C32—N22—C22—C120.2 (3)
N11—C11—C21—N21−1.4 (3)N12—C12—C22—N22−0.5 (3)
C21—N21—C31—N31−178.70 (15)C22—N22—C32—N32−179.47 (15)
C21—N21—C31—C411.5 (2)C22—N22—C32—C420.5 (2)
C11—N11—C41—C31−0.2 (2)C12—N12—C42—C320.5 (2)
C11—N11—C41—C51−179.62 (15)C12—N12—C42—C52−176.88 (15)
N31—C31—C41—N11178.87 (16)N32—C32—C42—N12179.09 (15)
N21—C31—C41—N11−1.3 (2)N22—C32—C42—N12−0.8 (2)
N31—C31—C41—C51−1.8 (2)N32—C32—C42—C52−3.7 (2)
N21—C31—C41—C51178.00 (15)N22—C32—C42—C52176.38 (14)
N11—C41—C51—O21177.16 (15)N12—C42—C52—O124.3 (2)
C31—C41—C51—O21−2.2 (2)C32—C42—C52—O12−173.05 (16)
N11—C41—C51—O11−3.6 (2)N12—C42—C52—O22−176.49 (15)
C31—C41—C51—O11177.04 (15)C32—C42—C52—O226.2 (2)
D—H···AD—HH···AD···AD—H···A
N31—H31A···N22i0.92 (3)2.20 (3)3.103 (2)169 (2)
N31—H31B···O210.90 (3)2.07 (3)2.726 (2)129 (2)
N32—H32A···N21ii0.88 (3)2.23 (3)3.100 (2)168 (2)
N32—H32B···O220.86 (3)2.06 (3)2.686 (2)129 (2)
N3—H3B···O210.93 (3)1.97 (3)2.849 (2)157 (2)
N3—H3C···O11iii0.96 (3)2.58 (3)3.287 (2)131 (2)
N3—H3C···N11iii0.96 (3)2.00 (3)2.909 (2)159 (2)
N3—H3D···O11iv0.89 (3)2.13 (3)2.944 (2)152 (2)
N4—H4A···O120.86 (3)2.13 (3)2.897 (2)148 (3)
N4—H4A···N120.86 (3)2.23 (3)2.912 (2)135 (3)
N4—H4B···O110.95 (4)1.86 (4)2.793 (2)166 (3)
N4—H4C···O11v0.84 (3)2.01 (4)2.839 (2)170 (3)
N4—H4D···O22vi0.87 (3)1.87 (3)2.742 (2)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N31—H31A⋯N22i0.92 (3)2.20 (3)3.103 (2)169 (2)
N31—H31B⋯O210.90 (3)2.07 (3)2.726 (2)129 (2)
N32—H32A⋯N21ii0.88 (3)2.23 (3)3.100 (2)168 (2)
N32—H32B⋯O220.86 (3)2.06 (3)2.686 (2)129 (2)
N3—H3B⋯O210.93 (3)1.97 (3)2.849 (2)157 (2)
N3—H3C⋯O11iii0.96 (3)2.58 (3)3.287 (2)131 (2)
N3—H3C⋯N11iii0.96 (3)2.00 (3)2.909 (2)159 (2)
N3—H3D⋯O11iv0.89 (3)2.13 (3)2.944 (2)152 (2)
N4—H4A⋯O120.86 (3)2.13 (3)2.897 (2)148 (3)
N4—H4A⋯N120.86 (3)2.23 (3)2.912 (2)135 (3)
N4—H4B⋯O110.95 (4)1.86 (4)2.793 (2)166 (3)
N4—H4C⋯O11v0.84 (3)2.01 (4)2.839 (2)170 (3)
N4—H4D⋯O22vi0.87 (3)1.87 (3)2.742 (2)176 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-Aminopyrazine-2-carboxylic acid.

Authors:  A J Dobson; R E Gerkin
Journal:  Acta Crystallogr C       Date:  1996-06-15       Impact factor: 1.172

3.  Metal and mixed-metal coordination polymers synthesized with pyrazine-2-carboxylate.

Authors:  Joseph M Ellsworth; Hans-Conrad Zur Loye
Journal:  Dalton Trans       Date:  2008-08-12       Impact factor: 4.390

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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