Literature DB >> 21754205

(S)-2-Amino-2-(2-chloro-phen-yl)cyclo-hexa-none.

Manfred Biermann, Kenneth I Hardcastle, Nikolai V Moskalev, Peter A Crooks.   

Abstract

The crystal structure of the title compound, C(12)H(14)ClNO, was determined in order to confirm that the chiral center of the mol-ecule has an S configuration. The cyclo-hexa-none ring adopts a chair conformation. The 2-chloro-phenyl ring is slightly twisted from the axial C-N bond, with a N-C-C-C torsion angle of -5.7 (2)°. In the crystal, an inter-molecular N-H⋯O hydrogen bond links adjacent mol-ecules into an infinite chain, which propagates in the b-axis direction.

Entities:  

Year:  2011        PMID: 21754205      PMCID: PMC3100030          DOI: 10.1107/S1600536811009950

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature on the preparation and use of some anesthetics, see: Holtman et al. (2006 ▶); Heshmati et al. (2003 ▶); Kohrs & Durieux (1998 ▶). For information on the synthetic transformations used, see: Kolb et al. (1994 ▶); Parcell & Sanchez (1981 ▶); Senanayake et al. (1996 ▶); Yang & Davisson (1985 ▶).

Experimental

Crystal data

C12H14ClNO M = 223.69 Orthorhombic, a = 7.2437 (5) Å b = 7.4244 (5) Å c = 20.4794 (15) Å V = 1101.38 (13) Å3 Z = 4 Cu Kα radiation μ = 2.84 mm−1 T = 173 K 0.43 × 0.15 × 0.03 mm

Data collection

Bruker SMART APEX II diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.375, T max = 0.920 3449 measured reflections 1538 independent reflections 1521 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.059 S = 1.01 1538 reflections 136 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 545 Friedel pairs Flack parameter: 0.060 (13) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811009950/nk2080sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009950/nk2080Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14ClNOF(000) = 472
Mr = 223.69Dx = 1.349 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 3161 reflections
a = 7.2437 (5) Åθ = 4.3–64.6°
b = 7.4244 (5) ŵ = 2.84 mm1
c = 20.4794 (15) ÅT = 173 K
V = 1101.38 (13) Å3Block, colourless
Z = 40.43 × 0.15 × 0.03 mm
Bruker SMART APEX II diffractometer1538 independent reflections
Radiation source: fine-focus sealed tube1521 reflections with I > 2σ(I)
graphiteRint = 0.022
ω scansθmax = 64.7°, θmin = 4.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.375, Tmax = 0.920k = −8→8
3449 measured reflectionsl = −24→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.023H-atom parameters constrained
wR(F2) = 0.059w = 1/[σ2(Fo2) + (0.0302P)2 + 0.1P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
1538 reflectionsΔρmax = 0.14 e Å3
136 parametersΔρmin = −0.15 e Å3
0 restraintsAbsolute structure: Flack (1983), 545 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.060 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.There were problems during data colleciton that were only realised after refinement of the results. The data were quite weak at high angle and although data were collected out to 0.85 Angstrons, the processed data were only 89% complete; however the overall statistics and quality of the results appeared quite good.
xyzUiso*/Ueq
C10.2928 (2)0.4934 (2)0.84577 (8)0.0241 (3)
C20.4469 (2)0.3899 (2)0.88115 (7)0.0248 (4)
C30.5543 (3)0.4618 (2)0.93085 (7)0.0288 (4)
C40.6938 (3)0.3647 (2)0.96124 (9)0.0389 (4)
H40.76370.41780.99540.047*
C50.7303 (3)0.1905 (3)0.94148 (10)0.0463 (5)
H50.82640.12360.96170.056*
C60.6268 (3)0.1144 (2)0.89243 (10)0.0434 (5)
H60.6508−0.00550.87870.052*
C70.4874 (3)0.2131 (2)0.86316 (8)0.0336 (4)
H70.41660.15830.82950.040*
C80.1313 (2)0.5361 (2)0.89240 (8)0.0301 (4)
H8A0.06530.42280.90260.036*
H8B0.18220.58380.93380.036*
C9−0.0066 (2)0.6718 (2)0.86506 (9)0.0379 (4)
H9A−0.07120.61840.82710.045*
H9B−0.10010.70030.89880.045*
C100.0903 (3)0.8435 (2)0.84417 (9)0.0380 (4)
H10A0.15240.89860.88230.046*
H10B−0.00180.93060.82740.046*
C110.2330 (3)0.8039 (2)0.79098 (8)0.0340 (4)
H11A0.16910.75980.75140.041*
H11B0.29860.91650.77950.041*
C120.3715 (2)0.6647 (2)0.81317 (7)0.0258 (4)
Cl10.52113 (6)0.68279 (5)0.958904 (19)0.03641 (13)
N10.2147 (2)0.39391 (19)0.79034 (7)0.0358 (3)
H1A0.30790.35500.76410.054*
H1B0.15020.29740.80550.054*
O10.53524 (16)0.67977 (16)0.80222 (6)0.0351 (3)
U11U22U33U12U13U23
C10.0209 (9)0.0303 (7)0.0211 (8)−0.0004 (7)−0.0008 (7)−0.0029 (6)
C20.0218 (9)0.0330 (8)0.0197 (8)−0.0022 (6)0.0041 (7)0.0037 (6)
C30.0267 (10)0.0373 (8)0.0223 (8)−0.0045 (7)0.0038 (7)0.0031 (6)
C40.0300 (10)0.0599 (11)0.0267 (9)−0.0057 (8)−0.0052 (8)0.0135 (8)
C50.0389 (11)0.0555 (11)0.0444 (11)0.0114 (10)0.0014 (9)0.0248 (9)
C60.0478 (13)0.0346 (9)0.0477 (12)0.0070 (8)0.0074 (10)0.0117 (8)
C70.0382 (11)0.0326 (7)0.0300 (9)−0.0014 (8)0.0040 (8)0.0029 (6)
C80.0232 (9)0.0409 (9)0.0262 (9)−0.0019 (7)0.0036 (7)−0.0012 (7)
C90.0234 (9)0.0546 (10)0.0357 (9)0.0059 (10)0.0011 (7)−0.0063 (7)
C100.0345 (10)0.0427 (9)0.0367 (10)0.0112 (8)−0.0040 (8)−0.0027 (8)
C110.0351 (10)0.0375 (8)0.0293 (8)0.0039 (8)−0.0035 (8)0.0031 (7)
C120.0279 (10)0.0344 (8)0.0150 (7)0.0001 (7)−0.0020 (6)−0.0016 (6)
Cl10.0387 (2)0.0428 (2)0.0278 (2)−0.00777 (19)−0.00231 (17)−0.00948 (14)
N10.0314 (9)0.0453 (7)0.0307 (8)−0.0022 (7)−0.0032 (7)−0.0123 (6)
O10.0266 (7)0.0477 (6)0.0310 (6)−0.0013 (6)0.0023 (5)0.0107 (5)
C1—N11.468 (2)C8—C91.525 (2)
C1—C21.537 (2)C8—H8A0.9900
C1—C81.543 (2)C8—H8B0.9900
C1—C121.545 (2)C9—C101.517 (3)
C2—C31.388 (2)C9—H9A0.9900
C2—C71.394 (2)C9—H9B0.9900
C3—C41.389 (3)C10—C111.530 (3)
C3—Cl11.7548 (16)C10—H10A0.9900
C4—C51.380 (3)C10—H10B0.9900
C4—H40.9500C11—C121.511 (2)
C5—C61.375 (3)C11—H11A0.9900
C5—H50.9500C11—H11B0.9900
C6—C71.384 (3)C12—O11.212 (2)
C6—H60.9500N1—H1A0.9100
C7—H70.9500N1—H1B0.9100
N1—C1—C2113.13 (13)C9—C8—H8B108.8
N1—C1—C8106.87 (14)C1—C8—H8B108.8
C2—C1—C8111.20 (13)H8A—C8—H8B107.7
N1—C1—C12102.84 (13)C10—C9—C8110.82 (15)
C2—C1—C12110.31 (13)C10—C9—H9A109.5
C8—C1—C12112.21 (13)C8—C9—H9A109.5
C3—C2—C7115.98 (16)C10—C9—H9B109.5
C3—C2—C1124.08 (15)C8—C9—H9B109.5
C7—C2—C1119.93 (15)H9A—C9—H9B108.1
C2—C3—C4122.46 (16)C9—C10—C11110.58 (15)
C2—C3—Cl1121.54 (13)C9—C10—H10A109.5
C4—C3—Cl1116.01 (14)C11—C10—H10A109.5
C5—C4—C3119.62 (18)C9—C10—H10B109.5
C5—C4—H4120.2C11—C10—H10B109.5
C3—C4—H4120.2H10A—C10—H10B108.1
C6—C5—C4119.67 (18)C12—C11—C10111.48 (14)
C6—C5—H5120.2C12—C11—H11A109.3
C4—C5—H5120.2C10—C11—H11A109.3
C5—C6—C7119.77 (18)C12—C11—H11B109.3
C5—C6—H6120.1C10—C11—H11B109.3
C7—C6—H6120.1H11A—C11—H11B108.0
C6—C7—C2122.49 (18)O1—C12—C11122.06 (16)
C6—C7—H7118.8O1—C12—C1121.14 (16)
C2—C7—H7118.8C11—C12—C1116.62 (15)
C9—C8—C1113.91 (15)C1—N1—H1A109.3
C9—C8—H8A108.8C1—N1—H1B109.2
C1—C8—H8A108.8H1A—N1—H1B109.5
N1—C1—C2—C3173.46 (15)C1—C2—C7—C6178.79 (17)
C8—C1—C2—C3−66.3 (2)N1—C1—C8—C9−68.43 (18)
C12—C1—C2—C358.89 (19)C2—C1—C8—C9167.66 (14)
N1—C1—C2—C7−5.7 (2)C12—C1—C8—C943.57 (19)
C8—C1—C2—C7114.58 (16)C1—C8—C9—C10−54.5 (2)
C12—C1—C2—C7−120.26 (15)C8—C9—C10—C1160.3 (2)
C7—C2—C3—C4−0.1 (2)C9—C10—C11—C12−56.4 (2)
C1—C2—C3—C4−179.30 (15)C10—C11—C12—O1−137.39 (18)
C7—C2—C3—Cl1179.79 (12)C10—C11—C12—C147.45 (19)
C1—C2—C3—Cl10.6 (2)N1—C1—C12—O1−101.44 (18)
C2—C3—C4—C50.7 (3)C2—C1—C12—O119.5 (2)
Cl1—C3—C4—C5−179.21 (14)C8—C1—C12—O1144.07 (16)
C3—C4—C5—C6−0.7 (3)N1—C1—C12—C1173.77 (17)
C4—C5—C6—C70.2 (3)C2—C1—C12—C11−165.31 (14)
C5—C6—C7—C20.4 (3)C8—C1—C12—C11−40.72 (19)
C3—C2—C7—C6−0.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.912.203.066 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.912.203.066 (2)160

Symmetry code: (i) .

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