Literature DB >> 21754195

1,3-Di-n-butyl-thio-urea.

Andrzej Okuniewski1, Agnieszka Dąbrowska, Jaroslaw Chojnacki.   

Abstract

In the title compound, C(9)H(20)N(2)S, the n-butyl groups are in syn and anti positions in relation to the C=S bond. In the crystal, two mol-ecules are connected by two N-H⋯S=C hydrogen bonds into a centrosymmetric dimer. Another N-H⋯S=C hydrogen bond links the dimers, forming layers with a hydro-philic inter-ior and a hydro-phobic exterior, which spread across the (100) plane. Inter-lacing of the external butyl groups combines these layers into a three-dimensional structure.

Entities:  

Year:  2011        PMID: 21754195      PMCID: PMC3099899          DOI: 10.1107/S1600536811009743

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of N,n class="Chemical">N′-di-n-butyl­thio­urea complexes with mercury and copper, see: Ahmad et al. (2009 ▶); Khan et al. (2007 ▶); Warda (1998 ▶). For structures of other symmetrically substituted thio­urea derivatives, see: Custelcean et al. (2005 ▶); Djurdjevic et al. (2007 ▶); Ramnathan et al. (1995 ▶). For synthetic methods, see: Herr et al. (2000 ▶); Kricheldorf (1970 ▶); Ranu et al. (2003 ▶).

Experimental

Crystal data

C9H20N2S M = 188.33 Monoclinic, a = 12.6395 (6) Å b = 10.0836 (6) Å c = 9.0128 (5) Å β = 90.476 (5)° V = 1148.66 (11) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 120 K 0.48 × 0.29 × 0.09 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010 ▶; based on Clark & Reid, 1995 ▶)] T min = 0.94, T max = 0.978 5268 measured reflections 2247 independent reflections 1656 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.116 S = 0.97 2247 reflections 119 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811009743/si2344sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009743/si2344Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H20N2SF(000) = 416
Mr = 188.33Dx = 1.089 Mg m3
Monoclinic, P21/cMelting point: 336(1) K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 12.6395 (6) ÅCell parameters from 2942 reflections
b = 10.0836 (6) Åθ = 2.6–28.6°
c = 9.0128 (5) ŵ = 0.24 mm1
β = 90.476 (5)°T = 120 K
V = 1148.66 (11) Å3Prism, clear colourless
Z = 40.48 × 0.28 × 0.09 mm
Oxford Diffraction Xcalibur Sapphire2 diffractometer2247 independent reflections
graphite1656 reflections with I > 2σ(I)
Detector resolution: 8.1883 pixels mm-1Rint = 0.038
ω scansθmax = 26°, θmin = 2.6°
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2010; based on Clark & Reid, 1995)]h = −15→15
Tmin = 0.94, Tmax = 0.978k = −12→12
5268 measured reflectionsl = −10→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 0.97w = 1/[σ2(Fo2) + (0.0753P)2] where P = (Fo2 + 2Fc2)/3
2247 reflections(Δ/σ)max < 0.001
119 parametersΔρmax = 0.45 e Å3
2 restraintsΔρmin = −0.27 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.66 (Oxford Diffraction, 2010) Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by Clark & Reid (1995).
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.16510 (4)0.55610 (5)1.03064 (5)0.02246 (18)
N10.03660 (13)0.60898 (18)0.80521 (17)0.0218 (4)
N20.19164 (13)0.72585 (17)0.80620 (18)0.0229 (4)
C10.12922 (15)0.63626 (19)0.8705 (2)0.0209 (4)
C2−0.00052 (15)0.6657 (2)0.6656 (2)0.0225 (5)
H2A0.05250.6490.58770.027*
H2B−0.00820.76290.67690.027*
C3−0.10604 (15)0.6065 (2)0.6181 (2)0.0232 (5)
H3A−0.10040.50860.61740.028*
H3B−0.16080.63140.69090.028*
C4−0.13954 (16)0.6542 (2)0.4653 (2)0.0260 (5)
H4A−0.08310.63270.39380.031*
H4B−0.14750.75180.46760.031*
C5−0.24282 (17)0.5926 (2)0.4116 (2)0.0332 (5)
H5A−0.23590.49590.41030.05*
H5B−0.2590.62440.31120.05*
H5C−0.30010.6180.47850.05*
C60.29696 (15)0.7629 (2)0.8598 (2)0.0239 (5)
H6A0.2960.76770.96950.029*
H6B0.31450.85230.82180.029*
C70.38310 (15)0.6662 (2)0.8128 (2)0.0254 (5)
H7A0.3650.57640.84890.03*
H7B0.38550.66290.70310.03*
C80.49139 (17)0.7044 (2)0.8722 (3)0.0355 (6)
H8A0.4890.70810.98190.043*
H8B0.50970.79410.83570.043*
C90.57675 (19)0.6074 (3)0.8255 (3)0.0469 (7)
H9A0.55830.51820.85960.07*
H9B0.64460.6340.86970.07*
H9C0.58240.60750.71720.07*
H1−0.0032 (14)0.5586 (19)0.854 (2)0.028 (6)*
H20.1715 (15)0.7675 (18)0.7292 (15)0.019 (6)*
U11U22U33U12U13U23
S10.0254 (3)0.0207 (3)0.0213 (3)0.0005 (2)0.00074 (19)0.0018 (2)
N10.0218 (9)0.0250 (9)0.0188 (8)−0.0043 (8)0.0011 (7)0.0019 (7)
N20.0238 (9)0.0227 (9)0.0221 (9)−0.0016 (7)−0.0019 (7)0.0047 (7)
C10.0251 (10)0.0180 (10)0.0197 (10)0.0039 (8)0.0051 (8)−0.0024 (8)
C20.0257 (10)0.0213 (11)0.0206 (10)0.0003 (9)0.0037 (8)0.0015 (8)
C30.0234 (10)0.0223 (10)0.0238 (11)−0.0007 (8)0.0013 (8)0.0018 (8)
C40.0325 (12)0.0223 (11)0.0232 (11)−0.0027 (9)−0.0003 (9)0.0014 (8)
C50.0325 (12)0.0355 (13)0.0313 (12)−0.0036 (10)−0.0068 (10)0.0028 (10)
C60.0226 (10)0.0219 (11)0.0272 (11)−0.0047 (9)−0.0010 (8)0.0011 (8)
C70.0251 (11)0.0280 (11)0.0230 (10)0.0000 (9)−0.0003 (8)0.0020 (9)
C80.0276 (12)0.0329 (13)0.0460 (14)−0.0016 (10)−0.0010 (10)0.0020 (11)
C90.0292 (13)0.0475 (16)0.0641 (18)0.0056 (12)0.0016 (12)0.0049 (14)
S1—C11.712 (2)C5—H5A0.98
N1—C11.334 (2)C5—H5B0.98
N1—C21.456 (2)C5—H5C0.98
N1—H10.844 (9)C6—C71.524 (3)
N2—C11.335 (3)C6—H6A0.99
N2—C61.461 (3)C6—H6B0.99
N2—H20.849 (9)C7—C81.515 (3)
C2—C31.519 (3)C7—H7A0.99
C2—H2A0.99C7—H7B0.99
C2—H2B0.99C8—C91.518 (3)
C3—C41.515 (3)C8—H8A0.99
C3—H3A0.99C8—H8B0.99
C3—H3B0.99C9—H9A0.98
C4—C51.521 (3)C9—H9B0.98
C4—H4A0.99C9—H9C0.98
C4—H4B0.99
C1—N1—C2125.10 (17)H5A—C5—H5B109.5
C1—N1—H1114.7 (15)C4—C5—H5C109.5
C2—N1—H1120.1 (15)H5A—C5—H5C109.5
C1—N2—C6124.74 (17)H5B—C5—H5C109.5
C1—N2—H2121.0 (14)N2—C6—C7113.32 (17)
C6—N2—H2114.2 (14)N2—C6—H6A108.9
N1—C1—N2117.90 (18)C7—C6—H6A108.9
N1—C1—S1119.96 (15)N2—C6—H6B108.9
N2—C1—S1122.13 (15)C7—C6—H6B108.9
N1—C2—C3111.42 (16)H6A—C6—H6B107.7
N1—C2—H2A109.3C8—C7—C6112.61 (18)
C3—C2—H2A109.3C8—C7—H7A109.1
N1—C2—H2B109.3C6—C7—H7A109.1
C3—C2—H2B109.3C8—C7—H7B109.1
H2A—C2—H2B108C6—C7—H7B109.1
C4—C3—C2111.70 (16)H7A—C7—H7B107.8
C4—C3—H3A109.3C7—C8—C9112.3 (2)
C2—C3—H3A109.3C7—C8—H8A109.1
C4—C3—H3B109.3C9—C8—H8A109.1
C2—C3—H3B109.3C7—C8—H8B109.1
H3A—C3—H3B107.9C9—C8—H8B109.1
C3—C4—C5113.14 (17)H8A—C8—H8B107.9
C3—C4—H4A109C8—C9—H9A109.5
C5—C4—H4A109C8—C9—H9B109.5
C3—C4—H4B109H9A—C9—H9B109.5
C5—C4—H4B109C8—C9—H9C109.5
H4A—C4—H4B107.8H9A—C9—H9C109.5
C4—C5—H5A109.5H9B—C9—H9C109.5
C4—C5—H5B109.5
C2—N1—C1—N22.5 (3)N1—C2—C3—C4−173.97 (16)
C2—N1—C1—S1−176.99 (15)C2—C3—C4—C5177.74 (17)
C6—N2—C1—N1−177.36 (17)C1—N2—C6—C781.5 (2)
C6—N2—C1—S12.1 (3)N2—C6—C7—C8−178.71 (17)
C1—N1—C2—C3176.27 (17)C6—C7—C8—C9179.74 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.84 (1)2.58 (1)3.3943 (17)164 (2)
N2—H2···S1ii0.85 (1)2.52 (1)3.3319 (17)159 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S1i0.84 (1)2.58 (1)3.3943 (17)164 (2)
N2—H2⋯S1ii0.85 (1)2.52 (1)3.3319 (17)159 (2)

Symmetry codes: (i) ; (ii) .

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