Literature DB >> 21754191

(S)-2-[(2,4-Dichloro-phen-yl)(hy-droxy)meth-yl]-5,5-dimethyl-1,3,2-dioxa-phosphinane 2-oxide.

Chubei Wang1, Hao Peng, Xiaosong Tan, Hongwu He.   

Abstract

In the title mol-ecule, C(12)H(15)Cl(2)O(4)P, the cyclic dioxaphosphinane ring adopts a chair conformation. In the crystal, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into chains propagating along the b axis.

Entities:  

Year:  2011        PMID: 21754191      PMCID: PMC3100063          DOI: 10.1107/S1600536811009585

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of hy­droxy­dioxa­phos­phinane derivatives, see: Peng et al. (2007 ▶); Liu et al. (2006 ▶). For the synthesis of chiral cyclic hy­droxy­dioxa­phos­phin­anes, see: Zhou et al. (2008 ▶).

Experimental

Crystal data

C12H15Cl2O4P M = 325.11 Monoclinic, a = 7.0263 (9) Å b = 9.9443 (13) Å c = 10.6462 (14) Å β = 93.975 (2)° V = 742.08 (17) Å3 Z = 2 Mo Kα radiation μ = 0.55 mm−1 T = 298 K 0.16 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 4069 measured reflections 2597 independent reflections 2478 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.105 S = 1.01 2597 reflections 177 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 1140 Friedel pairs Flack parameter: −0.15 (8) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811009585/cv5059sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009585/cv5059Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15Cl2O4PF(000) = 336
Mr = 325.11Dx = 1.455 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 7.0263 (9) ÅCell parameters from 2185 reflections
b = 9.9443 (13) Åθ = 2.8–28.1°
c = 10.6462 (14) ŵ = 0.55 mm1
β = 93.975 (2)°T = 298 K
V = 742.08 (17) Å3Block, colourless
Z = 20.16 × 0.12 × 0.10 mm
Bruker SMART APEX CCD area-detector diffractometer2478 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.067
graphiteθmax = 25.5°, θmin = 1.9°
φ and ω scansh = −8→8
4069 measured reflectionsk = −11→12
2597 independent reflectionsl = −12→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.105w = 1/[σ2(Fo2) + (0.0604P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2597 reflectionsΔρmax = 0.39 e Å3
177 parametersΔρmin = −0.25 e Å3
1 restraintAbsolute structure: Flack (1983), 1140 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.15 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0374 (4)0.6151 (3)0.2326 (3)0.0326 (6)
C21.2166 (4)0.6199 (3)0.2946 (3)0.0353 (6)
C31.2552 (5)0.6911 (4)0.4050 (3)0.0426 (7)
H31.37710.69160.44510.051*
C41.1093 (5)0.7608 (3)0.4537 (3)0.0432 (8)
C50.9289 (5)0.7620 (4)0.3937 (3)0.0454 (8)
H50.83160.81170.42640.054*
C60.8951 (4)0.6891 (3)0.2856 (3)0.0395 (7)
H60.77280.68900.24610.047*
C80.9910 (4)0.5319 (3)0.1163 (3)0.0330 (6)
H81.08940.46270.11120.040*
C90.7747 (5)0.4722 (4)−0.1830 (3)0.0461 (8)
H9A0.73000.4104−0.12090.055*
H9B0.78800.4222−0.26010.055*
C100.6092 (4)0.6611 (4)−0.0866 (3)0.0439 (8)
H10A0.52000.7344−0.10370.053*
H10B0.55750.6030−0.02420.053*
C110.6301 (5)0.5816 (4)−0.2073 (3)0.0456 (8)
C120.4368 (6)0.5156 (6)−0.2449 (5)0.0766 (14)
H12A0.44700.4632−0.31990.115*
H12B0.34180.5841−0.26050.115*
H12C0.40080.4583−0.17800.115*
C130.6874 (6)0.6734 (5)−0.3136 (3)0.0617 (11)
H13A0.80710.7157−0.28930.093*
H13B0.59130.7411−0.32970.093*
H13C0.69960.6211−0.38840.093*
Cl11.40915 (11)0.53739 (10)0.23277 (9)0.0563 (3)
Cl21.15586 (17)0.85446 (12)0.59048 (10)0.0703 (3)
O10.8112 (3)0.4671 (2)0.1240 (2)0.0404 (5)
H10.818 (6)0.390 (5)0.102 (4)0.061*
O20.9609 (3)0.5257 (2)−0.1376 (2)0.0425 (5)
O30.7922 (3)0.7156 (2)−0.0361 (2)0.0390 (5)
O41.1503 (3)0.7162 (2)−0.0359 (2)0.0450 (6)
P10.98124 (10)0.63058 (8)−0.02830 (7)0.0317 (2)
U11U22U33U12U13U23
C10.0314 (14)0.0335 (17)0.0328 (14)−0.0005 (13)0.0022 (11)0.0054 (13)
C20.0315 (14)0.0363 (16)0.0380 (15)0.0030 (14)0.0008 (11)0.0036 (14)
C30.0403 (18)0.0474 (18)0.0386 (17)−0.0026 (15)−0.0067 (13)0.0031 (15)
C40.055 (2)0.0433 (19)0.0312 (16)−0.0031 (16)0.0021 (14)−0.0047 (14)
C50.0400 (19)0.051 (2)0.0456 (19)0.0057 (16)0.0073 (15)−0.0045 (16)
C60.0305 (16)0.0443 (18)0.0433 (18)0.0024 (14)−0.0014 (13)−0.0034 (15)
C80.0277 (13)0.0318 (15)0.0397 (16)0.0010 (13)0.0031 (12)0.0010 (13)
C90.0453 (18)0.0470 (19)0.0452 (19)−0.0084 (16)−0.0034 (14)−0.0094 (16)
C100.0304 (15)0.055 (2)0.0464 (18)0.0036 (14)0.0009 (13)−0.0034 (16)
C110.0402 (18)0.056 (2)0.0404 (17)−0.0018 (16)−0.0029 (13)−0.0051 (16)
C120.048 (2)0.099 (4)0.080 (3)−0.014 (3)−0.0139 (19)−0.019 (3)
C130.071 (3)0.073 (3)0.040 (2)−0.001 (2)−0.0067 (17)0.0043 (18)
Cl10.0313 (4)0.0680 (6)0.0690 (6)0.0119 (4)−0.0002 (4)−0.0118 (5)
Cl20.0797 (7)0.0820 (7)0.0480 (5)−0.0019 (6)−0.0050 (5)−0.0268 (5)
O10.0354 (12)0.0373 (12)0.0489 (13)−0.0063 (10)0.0063 (9)−0.0050 (11)
O20.0359 (11)0.0502 (14)0.0411 (12)0.0067 (11)0.0015 (9)−0.0107 (11)
O30.0330 (12)0.0408 (13)0.0425 (12)0.0059 (9)−0.0020 (9)−0.0058 (10)
O40.0364 (12)0.0445 (13)0.0544 (14)−0.0067 (10)0.0055 (10)0.0060 (11)
P10.0292 (4)0.0331 (4)0.0327 (4)0.0000 (3)0.0020 (3)−0.0015 (3)
C1—C21.381 (4)C9—H9B0.9700
C1—C61.393 (4)C10—O31.463 (4)
C1—C81.506 (4)C10—C111.524 (5)
C2—C31.382 (5)C10—H10A0.9700
C2—Cl11.750 (3)C10—H10B0.9700
C3—C41.369 (5)C11—C131.530 (5)
C3—H30.9300C11—C121.536 (5)
C4—C51.379 (5)C12—H12A0.9600
C4—Cl21.741 (3)C12—H12B0.9600
C5—C61.366 (5)C12—H12C0.9600
C5—H50.9300C13—H13A0.9600
C6—H60.9300C13—H13B0.9600
C8—O11.425 (3)C13—H13C0.9600
C8—P11.822 (3)O1—H10.80 (5)
C8—H80.9800O2—P11.561 (2)
C9—O21.463 (4)O3—P11.572 (2)
C9—C111.499 (5)O4—P11.468 (2)
C9—H9A0.9700
C2—C1—C6116.4 (3)C11—C10—H10A109.3
C2—C1—C8123.4 (3)O3—C10—H10B109.3
C6—C1—C8120.2 (2)C11—C10—H10B109.3
C1—C2—C3122.9 (3)H10A—C10—H10B108.0
C1—C2—Cl1120.4 (2)C9—C11—C10109.6 (3)
C3—C2—Cl1116.7 (2)C9—C11—C13110.6 (3)
C4—C3—C2118.2 (3)C10—C11—C13111.1 (3)
C4—C3—H3120.9C9—C11—C12108.1 (3)
C2—C3—H3120.9C10—C11—C12107.8 (3)
C3—C4—C5121.2 (3)C13—C11—C12109.6 (3)
C3—C4—Cl2119.0 (3)C11—C12—H12A109.5
C5—C4—Cl2119.8 (3)C11—C12—H12B109.5
C6—C5—C4119.1 (3)H12A—C12—H12B109.5
C6—C5—H5120.5C11—C12—H12C109.5
C4—C5—H5120.5H12A—C12—H12C109.5
C5—C6—C1122.3 (3)H12B—C12—H12C109.5
C5—C6—H6118.9C11—C13—H13A109.5
C1—C6—H6118.9C11—C13—H13B109.5
O1—C8—C1110.1 (2)H13A—C13—H13B109.5
O1—C8—P1108.08 (19)C11—C13—H13C109.5
C1—C8—P1113.1 (2)H13A—C13—H13C109.5
O1—C8—H8108.5H13B—C13—H13C109.5
C1—C8—H8108.5C8—O1—H1110 (3)
P1—C8—H8108.5C9—O2—P1121.52 (19)
O2—C9—C11111.9 (3)C10—O3—P1122.6 (2)
O2—C9—H9A109.2O4—P1—O2112.27 (14)
C11—C9—H9A109.2O4—P1—O3111.68 (14)
O2—C9—H9B109.2O2—P1—O3106.63 (12)
C11—C9—H9B109.2O4—P1—C8112.04 (13)
H9A—C9—H9B107.9O2—P1—C8105.43 (14)
O3—C10—C11111.6 (2)O3—P1—C8108.43 (13)
O3—C10—H10A109.3
C6—C1—C2—C31.5 (5)O2—C9—C11—C12−175.9 (3)
C8—C1—C2—C3−176.6 (3)O3—C10—C11—C956.3 (4)
C6—C1—C2—Cl1−177.0 (2)O3—C10—C11—C13−66.1 (4)
C8—C1—C2—Cl15.0 (4)O3—C10—C11—C12173.8 (3)
C1—C2—C3—C4−0.7 (5)C11—C9—O2—P148.4 (4)
Cl1—C2—C3—C4177.8 (3)C11—C10—O3—P1−44.1 (4)
C2—C3—C4—C5−1.0 (5)C9—O2—P1—O4−153.1 (3)
C2—C3—C4—Cl2−178.4 (2)C9—O2—P1—O3−30.4 (3)
C3—C4—C5—C61.8 (5)C9—O2—P1—C884.7 (3)
Cl2—C4—C5—C6179.3 (3)C10—O3—P1—O4151.7 (2)
C4—C5—C6—C1−1.0 (5)C10—O3—P1—O228.8 (3)
C2—C1—C6—C5−0.6 (5)C10—O3—P1—C8−84.3 (3)
C8—C1—C6—C5177.5 (3)O1—C8—P1—O4171.92 (19)
C2—C1—C8—O1137.8 (3)C1—C8—P1—O449.8 (2)
C6—C1—C8—O1−40.1 (4)O1—C8—P1—O2−65.7 (2)
C2—C1—C8—P1−101.1 (3)C1—C8—P1—O2172.18 (19)
C6—C1—C8—P180.9 (3)O1—C8—P1—O348.2 (2)
O2—C9—C11—C10−58.6 (4)C1—C8—P1—O3−73.9 (2)
O2—C9—C11—C1364.1 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.80 (5)1.89 (5)2.686 (3)173 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O4i0.80 (5)1.89 (5)2.686 (3)173 (4)

Symmetry code: (i) .

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