Literature DB >> 21754186

N-[2-(4-Bromo-phen-yl)-5-methyl-4-oxo-1,3-thia-zolidin-3-yl]pyridine-3-carboxamide.

Mehmet Akkurt, Ismail Celik, Hale Demir, Sumru Ozkırımlı, Orhan Büyükgüngör.   

Abstract

In the title compound, C(16)H(14)BrN(3)O(2)S, the atoms of the n class="Chemical">1,3-thia-zolidine group, except for the N and the C atoms attached to the bromo-benzene ring, are disordered over two sets of sites with occupancies of 0.605 (13) and 0.395 (13). The benzene and pyridine rings make a dihedral angle of 86.2 (2)°. In the crystal, mol-ecules are linked by inter-molecular N-H⋯N and C-H⋯O hydrogen bonds, forming a three-dimensional network. Furthermore, there is a π-π stacking inter-action [centroid-centroid distance = 3.758 (2) Å] between the pyridine and benzene rings.

Entities:  

Year:  2011        PMID: 21754186      PMCID: PMC3100075          DOI: 10.1107/S1600536811009603

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the diverse pharmacological properties of pyridine-3-carboxamides, see: Abdel-Alim et al. (2005 ▶); Girgis et al. (2006 ▶); Slominska et al. (2008 ▶); Spanka et al. (2010 ▶); activities. For the pharmacological properties of 4-thia­zolidinone deriv­atives, see: Vigorita et al. (1992 ▶); Barreca et al. (2003 ▶); Rao et al. (2004 ▶); Jacop & Kutty (2004 ▶); Kalia et al. (2007 ▶).

Experimental

Crystal data

C16H14BrN3O2S M = 392.27 Tetragonal, a = 24.5799 (8) Å c = 10.9601 (6) Å V = 6621.8 (5) Å3 Z = 16 Mo Kα radiation μ = 2.62 mm−1 T = 296 K 0.37 × 0.30 × 0.28 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.444, T max = 0.527 13377 measured reflections 3644 independent reflections 1834 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.119 S = 1.02 3644 reflections 259 parameters 13 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.34 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811009603/om2414sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009603/om2414Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14BrN3O2SDx = 1.574 Mg m3
Mr = 392.27Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 9828 reflections
Hall symbol: -I 4adθ = 1.7–27.6°
a = 24.5799 (8) ŵ = 2.62 mm1
c = 10.9601 (6) ÅT = 296 K
V = 6621.8 (5) Å3Block, colourless
Z = 160.37 × 0.30 × 0.28 mm
F(000) = 3168
Stoe IPDS 2 diffractometer3644 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus1834 reflections with I > 2σ(I)
plane graphiteRint = 0.055
Detector resolution: 6.67 pixels mm-1θmax = 27.1°, θmin = 1.7°
ω scansh = −31→21
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −31→31
Tmin = 0.444, Tmax = 0.527l = −14→9
13377 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.046P)2] where P = (Fo2 + 2Fc2)/3
3644 reflections(Δ/σ)max < 0.001
259 parametersΔρmax = 0.39 e Å3
13 restraintsΔρmin = −0.34 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br10.16970 (2)0.06678 (2)0.30959 (7)0.1147 (3)
S1A0.2142 (3)0.3258 (3)0.5735 (10)0.112 (3)0.605 (13)
O1A0.3622 (6)0.3685 (8)0.529 (2)0.106 (7)0.605 (13)
O20.36844 (13)0.25700 (14)0.7196 (3)0.0950 (14)
N10.31204 (11)0.29058 (12)0.5238 (3)0.0623 (13)
N20.35645 (13)0.25553 (13)0.5165 (3)0.0595 (11)
N30.48519 (14)0.14473 (13)0.4828 (4)0.0707 (14)
C10.20330 (14)0.18614 (15)0.5608 (4)0.0640 (14)
C20.18240 (16)0.14118 (16)0.5027 (5)0.0730 (16)
C30.19861 (16)0.12919 (15)0.3869 (5)0.0673 (18)
C40.23459 (18)0.16225 (18)0.3269 (4)0.0763 (17)
C50.25484 (16)0.20793 (16)0.3847 (4)0.0653 (16)
C60.23981 (14)0.22004 (14)0.5022 (4)0.0560 (14)
C70.26058 (14)0.26964 (15)0.5686 (4)0.0703 (16)
C8A0.2692 (4)0.3725 (3)0.5910 (13)0.075 (4)0.605 (13)
C9A0.3197 (5)0.3447 (3)0.548 (2)0.079 (8)0.605 (13)
C10A0.2598 (5)0.4271 (4)0.5333 (15)0.125 (7)0.605 (13)
C110.38243 (15)0.24133 (15)0.6199 (5)0.0603 (14)
C120.42975 (14)0.20345 (14)0.6039 (4)0.0510 (14)
C130.46220 (17)0.19258 (16)0.7037 (4)0.0673 (16)
C140.50564 (16)0.15811 (16)0.6913 (5)0.0713 (18)
C150.51542 (16)0.13554 (16)0.5804 (5)0.0663 (16)
C160.44267 (16)0.17785 (16)0.4962 (4)0.0630 (14)
O1B0.3661 (9)0.3633 (10)0.482 (3)0.077 (6)0.395 (13)
C8B0.2702 (5)0.3783 (5)0.5205 (14)0.063 (5)0.395 (13)
S1B0.2171 (4)0.3287 (4)0.5249 (11)0.078 (2)0.395 (13)
C10B0.2737 (7)0.4152 (8)0.6288 (16)0.100 (7)0.395 (13)
C9B0.3209 (8)0.3454 (4)0.508 (3)0.059 (7)0.395 (13)
H50.278900.230700.343600.0780*
H70.266800.258500.653300.0840*
H40.245300.154000.247700.0910*
H10A0.226200.442000.562600.1870*0.605 (13)
H10B0.258100.423000.446300.1870*0.605 (13)
H8A0.273600.378700.678700.07 (2)*0.605 (13)
H130.454600.208500.778700.0810*
H140.528000.150300.757500.0850*
H150.545100.112300.572700.0800*
H160.420500.184000.428800.0760*
H10.192800.193800.640400.0770*
HN20.3657 (17)0.2533 (17)0.4409 (14)0.0810*
H10C0.289200.451100.554200.1870*0.605 (13)
H2A0.157300.119100.542300.0870*
H8B0.265700.400500.446900.0750*0.395 (13)
H10D0.240600.435700.635800.1500*0.395 (13)
H10E0.303700.439800.618600.1500*0.395 (13)
H10F0.279000.394000.701200.1500*0.395 (13)
U11U22U33U12U13U23
Br10.1245 (5)0.0791 (3)0.1405 (6)−0.0194 (3)−0.0237 (4)−0.0275 (3)
S1A0.0607 (18)0.092 (3)0.183 (8)−0.0045 (15)0.027 (3)−0.069 (3)
O1A0.066 (5)0.084 (5)0.167 (19)−0.012 (4)0.003 (7)−0.028 (8)
O20.094 (2)0.131 (3)0.060 (2)0.0395 (19)0.0025 (17)−0.029 (2)
N10.0498 (17)0.0572 (18)0.080 (3)0.0016 (14)0.0006 (16)−0.0031 (17)
N20.0555 (18)0.071 (2)0.052 (2)0.0053 (15)0.0044 (18)−0.0008 (19)
N30.076 (2)0.074 (2)0.062 (3)0.0162 (18)0.013 (2)0.0013 (19)
C10.060 (2)0.070 (2)0.062 (3)0.0051 (19)0.014 (2)−0.001 (2)
C20.061 (2)0.059 (2)0.099 (4)−0.0032 (19)0.004 (3)0.009 (2)
C30.069 (3)0.055 (2)0.078 (4)0.0041 (19)−0.010 (2)−0.005 (2)
C40.090 (3)0.082 (3)0.057 (3)−0.004 (2)0.002 (2)−0.010 (3)
C50.070 (3)0.068 (2)0.058 (3)−0.0105 (19)0.004 (2)0.003 (2)
C60.051 (2)0.057 (2)0.060 (3)0.0035 (17)0.003 (2)−0.005 (2)
C70.059 (2)0.077 (3)0.075 (3)−0.0095 (18)0.009 (2)−0.016 (2)
C8A0.083 (6)0.065 (6)0.076 (10)0.000 (4)0.005 (7)−0.012 (6)
C9A0.050 (7)0.076 (8)0.11 (2)−0.008 (5)−0.009 (6)−0.003 (5)
C10A0.139 (9)0.073 (7)0.162 (16)0.020 (6)−0.004 (9)−0.001 (8)
C110.061 (2)0.067 (2)0.053 (3)0.0035 (18)0.004 (2)−0.007 (2)
C120.057 (2)0.053 (2)0.043 (3)−0.0029 (16)0.0041 (19)−0.0006 (18)
C130.082 (3)0.069 (2)0.051 (3)0.004 (2)−0.006 (2)−0.007 (2)
C140.070 (3)0.066 (2)0.078 (4)0.008 (2)−0.017 (2)0.000 (3)
C150.061 (2)0.060 (2)0.078 (4)0.0060 (18)0.007 (2)0.002 (2)
C160.070 (2)0.070 (2)0.049 (3)0.012 (2)0.003 (2)−0.002 (2)
O1B0.073 (8)0.063 (9)0.096 (14)−0.008 (6)0.006 (7)0.010 (9)
C8B0.072 (7)0.063 (8)0.053 (10)0.008 (5)0.001 (8)0.012 (8)
S1B0.049 (3)0.069 (3)0.115 (6)0.0113 (17)0.007 (3)−0.030 (3)
C10B0.110 (11)0.078 (11)0.112 (15)−0.013 (8)−0.001 (10)−0.020 (11)
C9B0.069 (12)0.057 (10)0.052 (14)0.006 (8)−0.001 (7)−0.004 (6)
Br1—C31.891 (4)C8B—C9B1.49 (2)
S1A—C71.791 (8)C8B—C10B1.50 (2)
S1A—C8A1.784 (12)C11—C121.500 (5)
S1B—C71.865 (11)C12—C131.380 (6)
S1B—C8B1.787 (16)C12—C161.375 (6)
O1A—C9A1.22 (2)C13—C141.370 (6)
O1B—C9B1.23 (3)C14—C151.358 (7)
O2—C111.209 (6)C1—H10.9300
N1—C9A1.370 (9)C2—H2A0.9300
N1—N21.393 (4)C4—H40.9300
N1—C71.451 (5)C5—H50.9300
N1—C9B1.376 (11)C7—H70.9800
N2—C111.347 (6)C8A—H8A0.9800
N3—C151.322 (6)C8B—H8B0.9800
N3—C161.333 (5)C10A—H10B0.9600
N2—HN20.861 (19)C10A—H10C0.9600
C1—C61.383 (5)C10A—H10A0.9600
C1—C21.375 (6)C10B—H10F0.9600
C2—C31.363 (7)C10B—H10D0.9600
C3—C41.369 (6)C10B—H10E0.9600
C4—C51.382 (6)C13—H130.9300
C5—C61.372 (6)C14—H140.9300
C6—C71.509 (5)C15—H150.9300
C8A—C9A1.493 (16)C16—H160.9300
C8A—C10A1.502 (14)
Br1···C2i3.679 (4)C14···C1vii3.483 (6)
Br1···C3i3.669 (4)C15···O1Aiii3.062 (16)
S1B···C15i3.651 (12)C15···O1Biii3.11 (2)
S1B···C14i3.679 (11)C15···S1Bvii3.651 (12)
S1A···H14i3.1300C16···O1Bvi3.23 (3)
S1B···H15i3.0700C5···H5ii3.0400
S1B···H14i3.1500C5···HN23.01 (4)
S1B···H4ii3.1600C8B···H10Eviii3.0800
O1A···N22.78 (2)C8B···H4ii3.0700
O1A···C15iii3.062 (16)C10A···H10Cviii3.0100
O1A···C113.32 (2)C11···H72.9000
O1B···N22.69 (2)C15···HN2vi3.048 (18)
O1B···C113.38 (3)C16···HN22.72 (4)
O1B···C16iv3.23 (3)C16···HN2vi2.88 (3)
O1B···C15iii3.11 (2)H1···O2v2.4700
O2···N12.685 (5)H1···H72.4200
O2···C73.141 (5)HN2···C162.72 (4)
O2···C9A3.102 (15)HN2···H162.1800
O2···C1v3.295 (5)HN2···C53.01 (4)
O2···C9B3.39 (2)HN2···N3iv2.05 (2)
O1A···H15iii2.3800HN2···C15iv3.048 (18)
O1A···H10C2.7200HN2···O1B2.74 (5)
O1B···H10E2.8500HN2···C16iv2.88 (3)
O1B···H15iii2.4700HN2···H52.4500
O1B···HN22.74 (5)H4···S1Bii3.1600
O1B···H16iv2.5700H4···H8Bii2.5300
O2···H1v2.4700H4···C8Bii3.0700
O2···H72.6000H5···C5ii3.0400
O2···H132.5200H5···HN22.4500
N1···O22.685 (5)H5···N12.5900
N2···N3iv2.899 (5)H5···N22.7600
N2···O1A2.78 (2)H7···C112.9000
N2···C53.113 (5)H7···H12.4200
N2···O1B2.69 (2)H7···O22.6000
N3···N2vi2.899 (5)H7···H7v2.3100
N1···H52.5900H8B···H10Eviii2.3400
N2···H162.5500H8B···H4ii2.5300
N2···H52.7600H10B···H10Cviii2.2900
N3···HN2vi2.05 (2)H10C···O1A2.7200
N3···H16vi2.7400H10C···H10Bix2.2900
C1···C14i3.483 (6)H10C···C10Aix3.0100
C1···O2v3.295 (5)H10E···C8Bix3.0800
C2···C13i3.574 (6)H10E···O1B2.8500
C2···Br1vii3.679 (4)H10E···H8Bix2.3400
C3···Br1vii3.669 (4)H13···O22.5200
C5···N23.113 (5)H14···S1Avii3.1300
C7···O23.141 (5)H14···S1Bvii3.1500
C9A···O23.102 (15)H15···O1Biii2.4700
C9B···O23.39 (2)H15···S1Bvii3.0700
C11···O1A3.32 (2)H15···O1Aiii2.3800
C11···O1B3.38 (3)H16···N22.5500
C13···C13iii3.380 (6)H16···N3iv2.7400
C13···C2vii3.574 (6)H16···O1Bvi2.5700
C14···S1Bvii3.679 (11)H16···HN22.1800
C7—S1A—C8A91.0 (4)C11—C12—C13118.4 (4)
C7—S1B—C8B96.9 (6)C12—C13—C14119.5 (4)
N2—N1—C9A120.3 (6)C13—C14—C15118.7 (4)
N2—N1—C9B118.3 (9)N3—C15—C14123.7 (4)
C7—N1—C9A113.5 (7)N3—C16—C12123.7 (4)
C7—N1—C9B121.9 (9)C2—C1—H1120.00
N2—N1—C7118.9 (3)C6—C1—H1120.00
N1—N2—C11118.9 (3)C1—C2—H2A120.00
C15—N3—C16117.1 (4)C3—C2—H2A120.00
C11—N2—HN2132 (3)C3—C4—H4120.00
N1—N2—HN2108 (3)C5—C4—H4120.00
C2—C1—C6120.8 (4)C4—C5—H5120.00
C1—C2—C3119.7 (4)C6—C5—H5120.00
Br1—C3—C4120.6 (4)S1A—C7—H7107.00
Br1—C3—C2118.9 (3)N1—C7—H7106.00
C2—C3—C4120.5 (4)C6—C7—H7106.00
C3—C4—C5119.7 (4)S1B—C7—H7123.00
C4—C5—C6120.6 (4)S1A—C8A—H8A107.00
C1—C6—C7118.9 (4)C9A—C8A—H8A107.00
C1—C6—C5118.7 (4)C10A—C8A—H8A107.00
C5—C6—C7122.5 (3)C9B—C8B—H8B109.00
N1—C7—C6114.7 (3)C10B—C8B—H8B109.00
S1A—C7—C6115.0 (4)S1B—C8B—H8B109.00
S1B—C7—N197.9 (4)C8A—C10A—H10C109.00
S1B—C7—C6108.1 (4)H10A—C10A—H10B110.00
S1A—C7—N1107.0 (4)H10B—C10A—H10C110.00
S1A—C8A—C9A107.6 (7)C8A—C10A—H10B109.00
C9A—C8A—C10A113.8 (11)H10A—C10A—H10C109.00
S1A—C8A—C10A114.4 (9)C8A—C10A—H10A109.00
S1B—C8B—C10B115.7 (11)H10D—C10B—H10F110.00
C9B—C8B—C10B110.7 (15)C8B—C10B—H10D109.00
S1B—C8B—C9B104.1 (9)C8B—C10B—H10E109.00
N1—C9A—C8A113.0 (8)C8B—C10B—H10F110.00
O1A—C9A—C8A123.3 (11)H10D—C10B—H10E109.00
O1A—C9A—N1123.6 (14)H10E—C10B—H10F110.00
N1—C9B—C8B112.8 (14)C14—C13—H13120.00
O1B—C9B—C8B125.6 (15)C12—C13—H13120.00
O1B—C9B—N1121.5 (17)C15—C14—H14121.00
O2—C11—N2122.9 (4)C13—C14—H14121.00
O2—C11—C12121.6 (4)N3—C15—H15118.00
N2—C11—C12115.5 (4)C14—C15—H15118.00
C13—C12—C16117.3 (3)C12—C16—H16118.00
C11—C12—C16124.3 (4)N3—C16—H16118.00
C8A—S1A—C7—N1−26.3 (7)C2—C3—C4—C50.4 (6)
C8A—S1A—C7—C6−154.9 (6)Br1—C3—C4—C5179.4 (3)
C7—S1A—C8A—C9A19.9 (12)C3—C4—C5—C60.9 (6)
C7—S1A—C8A—C10A147.4 (10)C4—C5—C6—C7−179.6 (4)
C7—N1—N2—C11−75.1 (4)C4—C5—C6—C1−1.1 (6)
C9A—N1—N2—C1173.1 (11)C5—C6—C7—N1−24.1 (5)
C9A—N1—C7—S1A26.8 (10)C5—C6—C7—S1A100.6 (5)
N2—N1—C7—C6−54.3 (5)C1—C6—C7—N1157.4 (3)
C9A—N1—C7—C6155.5 (9)C1—C6—C7—S1A−77.9 (5)
C7—N1—C9A—C8A−12.1 (17)C10A—C8A—C9A—N1−136.2 (13)
N2—N1—C9A—O1A23 (3)S1A—C8A—C9A—N1−8.3 (18)
C7—N1—C9A—O1A172.4 (18)C10A—C8A—C9A—O1A39 (3)
N2—N1—C9A—C8A−161.9 (10)S1A—C8A—C9A—O1A167 (2)
N2—N1—C7—S1A177.0 (4)N2—C11—C12—C13172.2 (3)
N1—N2—C11—O21.2 (6)O2—C11—C12—C13−9.0 (6)
N1—N2—C11—C12180.0 (3)O2—C11—C12—C16169.8 (4)
C16—N3—C15—C14−0.5 (6)N2—C11—C12—C16−9.0 (5)
C15—N3—C16—C121.6 (6)C16—C12—C13—C141.0 (6)
C2—C1—C6—C7178.5 (3)C11—C12—C16—N3179.2 (4)
C2—C1—C6—C50.0 (6)C11—C12—C13—C14180.0 (4)
C6—C1—C2—C31.3 (6)C13—C12—C16—N3−1.9 (6)
C1—C2—C3—C4−1.5 (6)C12—C13—C14—C15−0.1 (6)
C1—C2—C3—Br1179.5 (3)C13—C14—C15—N3−0.2 (6)
D—H···AD—HH···AD···AD—H···A
N2—HN2···N3iv0.861 (19)2.05 (2)2.899 (5)167 (4)
C1—H1···O2v0.932.473.295 (5)149
C5—H5···N10.932.592.903 (5)100
C15—H15···O1Aiii0.932.383.062 (16)130
C16—H16···N20.932.552.861 (5)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—HN2⋯N3i0.861 (19)2.05 (2)2.899 (5)167 (4)
C1—H1⋯O2ii0.932.473.295 (5)149
C15—H15⋯O1Aiii0.932.383.062 (16)130

Symmetry codes: (i) ; (ii) ; (iii) .

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