Literature DB >> 21754159

(Z)-5-Benzyl-idene-3-butyl-4-phenyl-1,3-oxazolidin-2-one.

Jin-Wu Zhao1, Jing-Xiu Xu.   

Abstract

In the title compound, C(20)H(21)NO(2), the benzyl group and the oxazolidin-2-one unit are each essentially planar, with maximum deviations of 0.026 (2) and 0.031 (2) Å, respectively. The dihedral angle between the phenyl ring and the oxazolidin-2-one unit is 69.25 (2)°. In the crystal, mol-ecules are linked by weak inter-molecular C-H⋯O and C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21754159      PMCID: PMC3100061          DOI: 10.1107/S1600536811008762

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 2-oxazolidinone derivatives and for heterocyclic systems of anti­bacterial inter­est, see: Mukhtar & Wright (2005 ▶); Ager et al. (1996 ▶); Renslo et al. (2006 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the chemical structure of the title compound established from NMR data, see: Yoo & Li (2008 ▶).

Experimental

Crystal data

C20H21NO2 M = 307.38 Monoclinic, a = 10.029 (2) Å b = 9.1941 (18) Å c = 18.389 (4) Å β = 100.51 (3)° V = 1667.1 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.31 × 0.25 × 0.18 mm

Data collection

Rigaku/MSC Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.989, T max = 0.997 12969 measured reflections 2994 independent reflections 1803 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.117 S = 1.03 2994 reflections 209 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811008762/bg2393sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008762/bg2393Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21NO2F(000) = 656
Mr = 307.38Dx = 1.225 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5837 reflections
a = 10.029 (2) Åθ = 2.8–27.9°
b = 9.1941 (18) ŵ = 0.08 mm1
c = 18.389 (4) ÅT = 293 K
β = 100.51 (3)°Block, colorless
V = 1667.1 (6) Å30.31 × 0.25 × 0.18 mm
Z = 4
Rigaku/MSC Mercury CCD diffractometer2994 independent reflections
Radiation source: fine-focus sealed tube1803 reflections with I > 2σ(I)
graphiteRint = 0.041
ω scansθmax = 25.2°, θmin = 3.0°
Absorption correction: multi-scan (REQAB; Jacobson, 1998)h = −12→12
Tmin = 0.989, Tmax = 0.997k = −11→11
12969 measured reflectionsl = −22→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0472P)2 + 0.3223P] where P = (Fo2 + 2Fc2)/3
2994 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.59314 (19)0.3280 (2)0.36032 (11)0.0590 (5)
H10.54410.36030.31540.071*
C20.5426 (2)0.3511 (3)0.42412 (12)0.0675 (6)
H20.46090.40030.42180.081*
C30.6115 (2)0.3023 (3)0.49109 (12)0.0680 (6)
H30.57640.31740.53390.082*
C40.7330 (2)0.2308 (2)0.49425 (11)0.0636 (6)
H40.77980.19660.53930.076*
C50.78512 (19)0.2099 (2)0.43106 (10)0.0532 (5)
H50.86820.16300.43420.064*
C60.71618 (17)0.2574 (2)0.36199 (10)0.0477 (5)
C70.77658 (18)0.2274 (2)0.29672 (10)0.0517 (5)
H70.85650.17370.30590.062*
C80.73519 (17)0.2650 (2)0.22699 (10)0.0477 (5)
C90.6003 (2)0.3656 (2)0.12780 (11)0.0560 (5)
C100.79952 (18)0.2321 (2)0.16033 (10)0.0509 (5)
H100.79670.12700.15120.061*
C110.94436 (17)0.2858 (2)0.16712 (9)0.0471 (5)
C120.9744 (2)0.4219 (2)0.14300 (11)0.0569 (5)
H120.90470.48370.12170.068*
C131.1078 (2)0.4670 (3)0.15040 (12)0.0669 (6)
H131.12710.55840.13330.080*
C141.2119 (2)0.3782 (3)0.18269 (12)0.0688 (6)
H141.30130.40900.18740.083*
C151.1831 (2)0.2442 (3)0.20790 (12)0.0678 (6)
H151.25320.18420.23060.081*
C161.05059 (19)0.1974 (2)0.19989 (11)0.0585 (5)
H161.03220.10540.21670.070*
C170.7052 (2)0.2948 (3)0.02324 (10)0.0651 (6)
H17A0.79830.30110.01590.078*
H17B0.65630.3771−0.00160.078*
C180.6430 (2)0.1560 (2)−0.01191 (10)0.0643 (6)
H18A0.55270.1447−0.00080.077*
H18B0.69710.07380.00940.077*
C190.6343 (2)0.1550 (3)−0.09517 (10)0.0707 (6)
H19A0.72540.1578−0.10600.085*
H19B0.58750.2421−0.11580.085*
C200.5609 (3)0.0224 (3)−0.13268 (12)0.0880 (8)
H20A0.6069−0.0643−0.11280.132*
H20B0.56000.0270−0.18490.132*
H20C0.46940.0210−0.12400.132*
N10.70329 (15)0.30487 (19)0.10237 (8)0.0570 (5)
O10.61860 (12)0.34597 (15)0.20363 (7)0.0572 (4)
O20.50276 (13)0.43149 (18)0.09551 (8)0.0707 (5)
U11U22U33U12U13U23
C10.0542 (12)0.0656 (14)0.0581 (12)0.0036 (10)0.0127 (10)0.0080 (10)
C20.0576 (12)0.0786 (16)0.0709 (14)0.0087 (12)0.0242 (11)0.0050 (12)
C30.0719 (14)0.0809 (17)0.0569 (13)−0.0049 (13)0.0272 (11)−0.0012 (11)
C40.0655 (13)0.0775 (16)0.0483 (12)−0.0063 (12)0.0121 (10)0.0030 (10)
C50.0486 (10)0.0606 (13)0.0501 (11)−0.0024 (9)0.0079 (9)0.0028 (9)
C60.0439 (10)0.0522 (12)0.0478 (11)−0.0035 (9)0.0103 (8)0.0021 (9)
C70.0475 (10)0.0575 (13)0.0496 (11)0.0031 (9)0.0079 (9)0.0033 (9)
C80.0403 (9)0.0536 (12)0.0484 (11)0.0000 (9)0.0061 (8)0.0021 (9)
C90.0478 (11)0.0695 (14)0.0498 (11)−0.0064 (11)0.0066 (9)0.0065 (10)
C100.0509 (10)0.0564 (12)0.0440 (10)0.0004 (9)0.0050 (8)−0.0012 (9)
C110.0451 (10)0.0569 (13)0.0397 (10)0.0054 (9)0.0090 (8)−0.0048 (9)
C120.0545 (12)0.0586 (14)0.0572 (12)0.0060 (10)0.0087 (9)0.0024 (10)
C130.0655 (13)0.0702 (15)0.0667 (14)−0.0091 (12)0.0163 (11)−0.0021 (11)
C140.0495 (12)0.0943 (19)0.0639 (13)−0.0051 (13)0.0134 (10)−0.0137 (13)
C150.0531 (12)0.0852 (18)0.0638 (14)0.0157 (12)0.0074 (10)−0.0040 (12)
C160.0573 (12)0.0622 (14)0.0551 (12)0.0092 (11)0.0074 (10)0.0002 (10)
C170.0596 (12)0.0931 (17)0.0412 (11)−0.0056 (12)0.0060 (9)0.0018 (11)
C180.0695 (13)0.0788 (16)0.0429 (11)0.0114 (12)0.0061 (9)0.0005 (10)
C190.0640 (13)0.1041 (19)0.0441 (11)0.0091 (13)0.0105 (10)−0.0017 (12)
C200.122 (2)0.091 (2)0.0481 (13)0.0186 (16)0.0078 (13)−0.0100 (12)
N10.0505 (9)0.0798 (13)0.0386 (9)0.0037 (9)0.0026 (7)0.0022 (8)
O10.0494 (8)0.0730 (10)0.0493 (8)0.0095 (7)0.0088 (6)0.0084 (7)
O20.0487 (8)0.0929 (12)0.0676 (9)0.0062 (8)0.0029 (7)0.0216 (8)
C1—C21.376 (3)C11—C161.387 (3)
C1—C61.390 (3)C12—C131.383 (3)
C1—H10.9300C12—H120.9300
C2—C31.373 (3)C13—C141.372 (3)
C2—H20.9300C13—H130.9300
C3—C41.376 (3)C14—C151.365 (3)
C3—H30.9300C14—H140.9300
C4—C51.372 (3)C15—C161.379 (3)
C4—H40.9300C15—H150.9300
C5—C61.401 (2)C16—H160.9300
C5—H50.9300C17—N11.461 (2)
C6—C71.466 (3)C17—C181.513 (3)
C7—C81.320 (2)C17—H17A0.9700
C7—H70.9300C17—H17B0.9700
C8—O11.387 (2)C18—C191.518 (3)
C8—C101.516 (3)C18—H18A0.9700
C9—O21.210 (2)C18—H18B0.9700
C9—N11.332 (2)C19—C201.523 (3)
C9—O11.385 (2)C19—H19A0.9700
C10—N11.463 (2)C19—H19B0.9700
C10—C111.518 (2)C20—H20A0.9600
C10—H100.9800C20—H20B0.9600
C11—C121.380 (3)C20—H20C0.9600
C2—C1—C6121.09 (19)C14—C13—H13119.7
C2—C1—H1119.5C12—C13—H13119.7
C6—C1—H1119.5C15—C14—C13119.5 (2)
C1—C2—C3120.7 (2)C15—C14—H14120.2
C1—C2—H2119.6C13—C14—H14120.2
C3—C2—H2119.6C14—C15—C16120.3 (2)
C4—C3—C2119.4 (2)C14—C15—H15119.9
C4—C3—H3120.3C16—C15—H15119.9
C2—C3—H3120.3C15—C16—C11120.8 (2)
C5—C4—C3120.2 (2)C15—C16—H16119.6
C5—C4—H4119.9C11—C16—H16119.6
C3—C4—H4119.9N1—C17—C18113.57 (17)
C4—C5—C6121.53 (19)N1—C17—H17A108.9
C4—C5—H5119.2C18—C17—H17A108.9
C6—C5—H5119.2N1—C17—H17B108.9
C1—C6—C5117.08 (18)C18—C17—H17B108.9
C1—C6—C7124.57 (17)H17A—C17—H17B107.7
C5—C6—C7118.34 (17)C17—C18—C19112.31 (18)
C8—C7—C6130.01 (18)C17—C18—H18A109.1
C8—C7—H7115.0C19—C18—H18A109.1
C6—C7—H7115.0C17—C18—H18B109.1
C7—C8—O1122.65 (17)C19—C18—H18B109.1
C7—C8—C10128.95 (17)H18A—C18—H18B107.9
O1—C8—C10108.40 (15)C18—C19—C20113.3 (2)
O2—C9—N1130.30 (19)C18—C19—H19A108.9
O2—C9—O1120.42 (19)C20—C19—H19A108.9
N1—C9—O1109.27 (17)C18—C19—H19B108.9
N1—C10—C8100.16 (15)C20—C19—H19B108.9
N1—C10—C11113.93 (16)H19A—C19—H19B107.7
C8—C10—C11114.25 (15)C19—C20—H20A109.5
N1—C10—H10109.4C19—C20—H20B109.5
C8—C10—H10109.4H20A—C20—H20B109.5
C11—C10—H10109.4C19—C20—H20C109.5
C12—C11—C16118.39 (18)H20A—C20—H20C109.5
C12—C11—C10122.06 (17)H20B—C20—H20C109.5
C16—C11—C10119.54 (19)C9—N1—C10112.76 (15)
C13—C12—C11120.3 (2)C9—N1—C17121.86 (16)
C13—C12—H12119.8C10—N1—C17124.73 (16)
C11—C12—H12119.8C9—O1—C8109.36 (15)
C14—C13—C12120.6 (2)
Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.932.583.343 (3)141
C3—H3···Cg2ii0.932.933.674 (2)138
C12—H12···Cg1iii0.932.913.706 (3)145
C20—H20B···Cg2iv0.962.923.812 (1)156
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O2i0.932.583.343 (3)141
C3—H3⋯Cg2ii0.932.933.674 (2)138
C12—H12⋯Cg1iii0.932.913.706 (3)145
C20—H20BCg2iv0.962.923.812 (1)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  1,2-Amino Alcohols and Their Heterocyclic Derivatives as Chiral Auxiliaries in Asymmetric Synthesis.

Authors:  David J. Ager; Indra Prakash; David R. Schaad
Journal:  Chem Rev       Date:  1996-03-28       Impact factor: 60.622

Review 2.  Streptogramins, oxazolidinones, and other inhibitors of bacterial protein synthesis.

Authors:  Tariq A Mukhtar; Gerard D Wright
Journal:  Chem Rev       Date:  2005-02       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 4.  Recent developments in the identification of novel oxazolidinone antibacterial agents.

Authors:  Adam R Renslo; Gary W Luehr; Mikhail F Gordeev
Journal:  Bioorg Med Chem       Date:  2006-03-09       Impact factor: 3.641

  4 in total

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