Literature DB >> 21754145

2-(4-Methyl-phen-yl)-1H-imidazo[4,5-f][1,10]phenanthroline.

Ling Ma1, Liping Lu, Miaoli Zhu.   

Abstract

In the title compound, C(20)H(14)N(4), all the non-H atoms are roughly coplanar with an r.m.s. deviation of 0.0776 Å. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds, forming chains along the ([Formula: see text]). The chains are connected by inter-molecular C-H⋯N hydrogen bonds and π-π stacking inter-actions between inversion-related phenanthroline, imidazole and phenyl rings with centroid-centroid distances in the range 3.777 (1)-3.905 (1) Å.

Entities:  

Year:  2011        PMID: 21754145      PMCID: PMC3099870          DOI: 10.1107/S1600536811008853

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of complexes of metal ions with 1,10-phenanthroline and its derivatives, see: Gao et al. (2009 ▶); Lu et al. (2003 ▶); Yuan et al. (2009 ▶, 2010 ▶); Chen et al. (2010 ▶). For aromatic π–π stacking inter­actions in related structures, see: Lu et al. (2004a ▶,b ▶,c ▶,d ▶); Ma et al. (2010 ▶); Ye et al. (2005 ▶); Zhang et al. (2005 ▶).

Experimental

Crystal data

C20H14N4 M = 310.35 Monoclinic, a = 9.1609 (8) Å b = 15.5398 (13) Å c = 11.725 (1) Å β = 108.892 (1)° V = 1579.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.976, T max = 0.984 10917 measured reflections 2790 independent reflections 2182 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.107 S = 1.05 2790 reflections 222 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811008853/lw2058sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008853/lw2058Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H14N4F(000) = 648
Mr = 310.35Dx = 1.305 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4474 reflections
a = 9.1609 (8) Åθ = 2.5–27.4°
b = 15.5398 (13) ŵ = 0.08 mm1
c = 11.725 (1) ÅT = 298 K
β = 108.892 (1)°Block, yellow
V = 1579.2 (2) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker SMART 1K CCD area-detector diffractometer2790 independent reflections
Radiation source: fine-focus sealed tube2182 reflections with I > 2σ(I)
graphiteRint = 0.021
ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −10→10
Tmin = 0.976, Tmax = 0.984k = −18→18
10917 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.047P)2 + 0.4106P] where P = (Fo2 + 2Fc2)/3
2790 reflections(Δ/σ)max = 0.001
222 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1494 (2)0.34388 (11)0.29392 (16)0.0569 (5)
H10.07960.38930.27750.068*
C20.2314 (2)0.32622 (12)0.41361 (15)0.0600 (5)
H20.21420.35820.47510.072*
C30.3377 (2)0.26132 (11)0.43997 (14)0.0497 (4)
H30.39580.24950.51950.060*
C40.35793 (17)0.21310 (9)0.34572 (13)0.0394 (4)
C50.26563 (18)0.23316 (10)0.22634 (13)0.0413 (4)
C60.27420 (18)0.18067 (10)0.12531 (13)0.0424 (4)
C70.37132 (17)0.10795 (10)0.14623 (13)0.0405 (4)
C80.3685 (2)0.05668 (11)0.04748 (14)0.0506 (4)
H80.42900.00730.05870.061*
C90.2767 (2)0.07936 (12)−0.06532 (15)0.0607 (5)
H90.27400.0464−0.13210.073*
C100.1872 (2)0.15308 (12)−0.07761 (15)0.0635 (5)
H100.12560.1686−0.15480.076*
C110.46288 (17)0.14274 (10)0.36043 (13)0.0386 (4)
C120.46786 (17)0.09098 (10)0.26710 (13)0.0390 (4)
C130.63601 (17)0.04011 (10)0.42481 (13)0.0415 (4)
C140.76079 (17)−0.01205 (10)0.50460 (13)0.0433 (4)
C150.8293 (2)−0.07558 (12)0.45554 (16)0.0549 (5)
H150.7935−0.08540.37280.066*
C160.9495 (2)−0.12424 (13)0.52785 (17)0.0615 (5)
H160.9942−0.16580.49260.074*
C171.0053 (2)−0.11301 (13)0.65087 (16)0.0567 (5)
C180.9361 (2)−0.05052 (13)0.69982 (16)0.0600 (5)
H180.9709−0.04190.78280.072*
C190.8162 (2)−0.00045 (12)0.62845 (15)0.0538 (4)
H190.77250.04140.66390.065*
C201.1369 (2)−0.16699 (15)0.7291 (2)0.0798 (7)
H20A1.2040−0.13170.79140.120*
H20B1.1938−0.19070.68060.120*
H20C1.0966−0.21290.76490.120*
N10.16445 (16)0.29995 (9)0.20174 (12)0.0501 (4)
N20.18375 (17)0.20271 (9)0.01305 (12)0.0560 (4)
N30.57503 (14)0.02646 (8)0.30708 (11)0.0433 (3)
N40.57054 (15)0.10950 (8)0.46160 (11)0.0416 (3)
H40.603 (2)0.1350 (12)0.5353 (17)0.062 (5)*
U11U22U33U12U13U23
C10.0703 (12)0.0485 (10)0.0497 (10)0.0146 (9)0.0165 (9)−0.0020 (8)
C20.0797 (13)0.0563 (11)0.0439 (10)0.0147 (10)0.0200 (9)−0.0059 (8)
C30.0604 (10)0.0491 (10)0.0365 (8)0.0031 (8)0.0114 (7)−0.0023 (7)
C40.0447 (8)0.0365 (8)0.0354 (8)−0.0045 (7)0.0107 (6)−0.0015 (6)
C50.0469 (9)0.0372 (8)0.0377 (8)−0.0005 (7)0.0109 (7)0.0004 (7)
C60.0481 (9)0.0423 (9)0.0338 (8)0.0009 (7)0.0089 (7)0.0007 (7)
C70.0453 (9)0.0412 (9)0.0350 (8)−0.0010 (7)0.0130 (7)0.0015 (6)
C80.0608 (10)0.0507 (10)0.0394 (9)0.0100 (8)0.0151 (8)−0.0014 (7)
C90.0787 (13)0.0637 (12)0.0359 (9)0.0129 (10)0.0132 (8)−0.0062 (8)
C100.0787 (13)0.0678 (12)0.0337 (9)0.0174 (10)0.0041 (8)−0.0004 (8)
C110.0414 (8)0.0388 (8)0.0333 (8)−0.0042 (7)0.0089 (6)0.0016 (6)
C120.0409 (8)0.0391 (8)0.0356 (8)−0.0011 (7)0.0104 (6)0.0019 (6)
C130.0436 (8)0.0417 (9)0.0386 (8)−0.0032 (7)0.0127 (7)0.0035 (7)
C140.0424 (8)0.0460 (9)0.0404 (8)−0.0031 (7)0.0120 (7)0.0083 (7)
C150.0595 (11)0.0585 (11)0.0448 (9)0.0087 (9)0.0140 (8)0.0092 (8)
C160.0611 (11)0.0623 (12)0.0620 (12)0.0133 (9)0.0213 (9)0.0146 (9)
C170.0461 (9)0.0642 (12)0.0578 (11)0.0003 (9)0.0139 (8)0.0233 (9)
C180.0540 (10)0.0757 (13)0.0432 (10)−0.0034 (9)0.0060 (8)0.0141 (9)
C190.0533 (10)0.0617 (11)0.0443 (9)0.0007 (8)0.0126 (8)0.0055 (8)
C200.0587 (12)0.0927 (16)0.0806 (15)0.0122 (11)0.0124 (11)0.0390 (13)
N10.0613 (9)0.0434 (8)0.0418 (8)0.0089 (7)0.0114 (6)0.0003 (6)
N20.0698 (10)0.0544 (9)0.0355 (7)0.0137 (7)0.0054 (7)0.0003 (6)
N30.0457 (7)0.0438 (8)0.0379 (7)0.0023 (6)0.0099 (6)0.0027 (6)
N40.0463 (7)0.0417 (8)0.0327 (7)−0.0028 (6)0.0070 (6)−0.0001 (6)
C1—N11.323 (2)C11—C121.371 (2)
C1—C21.388 (2)C11—N41.3744 (19)
C1—H10.9300C12—N31.3751 (19)
C2—C31.366 (2)C13—N31.3278 (19)
C2—H20.9300C13—N41.370 (2)
C3—C41.396 (2)C13—C141.465 (2)
C3—H30.9300C14—C191.386 (2)
C4—C51.416 (2)C14—C151.390 (2)
C4—C111.429 (2)C15—C161.378 (2)
C5—N11.359 (2)C15—H150.9300
C5—C61.461 (2)C16—C171.376 (3)
C6—N21.3528 (19)C16—H160.9300
C6—C71.410 (2)C17—C181.382 (3)
C7—C81.399 (2)C17—C201.511 (2)
C7—C121.431 (2)C18—C191.384 (2)
C8—C91.364 (2)C18—H180.9300
C8—H80.9300C19—H190.9300
C9—C101.389 (3)C20—H20A0.9600
C9—H90.9300C20—H20B0.9600
C10—N21.322 (2)C20—H20C0.9600
C10—H100.9300N4—H40.908 (19)
N1—C1—C2123.95 (16)N3—C12—C7128.03 (13)
N1—C1—H1118.0N3—C13—N4111.93 (13)
C2—C1—H1118.0N3—C13—C14123.65 (14)
C3—C2—C1119.18 (16)N4—C13—C14124.41 (14)
C3—C2—H2120.4C19—C14—C15117.68 (15)
C1—C2—H2120.4C19—C14—C13122.85 (16)
C2—C3—C4118.99 (15)C15—C14—C13119.47 (14)
C2—C3—H3120.5C16—C15—C14120.86 (17)
C4—C3—H3120.5C16—C15—H15119.6
C3—C4—C5118.32 (14)C14—C15—H15119.6
C3—C4—C11124.86 (14)C17—C16—C15121.78 (19)
C5—C4—C11116.79 (13)C17—C16—H16119.1
N1—C5—C4121.73 (14)C15—C16—H16119.1
N1—C5—C6117.80 (13)C16—C17—C18117.37 (16)
C4—C5—C6120.46 (14)C16—C17—C20121.20 (19)
N2—C6—C7121.69 (14)C18—C17—C20121.43 (18)
N2—C6—C5118.08 (14)C17—C18—C19121.64 (17)
C7—C6—C5120.20 (13)C17—C18—H18119.2
C8—C7—C6118.11 (14)C19—C18—H18119.2
C8—C7—C12123.68 (14)C18—C19—C14120.66 (18)
C6—C7—C12118.22 (13)C18—C19—H19119.7
C9—C8—C7119.71 (16)C14—C19—H19119.7
C9—C8—H8120.1C17—C20—H20A109.5
C7—C8—H8120.1C17—C20—H20B109.5
C8—C9—C10118.15 (16)H20A—C20—H20B109.5
C8—C9—H9120.9C17—C20—H20C109.5
C10—C9—H9120.9H20A—C20—H20C109.5
N2—C10—C9124.39 (16)H20B—C20—H20C109.5
N2—C10—H10117.8C1—N1—C5117.73 (14)
C9—C10—H10117.8C10—N2—C6117.91 (15)
C12—C11—N4105.57 (13)C13—N3—C12104.57 (13)
C12—C11—C4123.21 (13)C13—N4—C11106.80 (13)
N4—C11—C4131.17 (14)C13—N4—H4127.0 (12)
C11—C12—N3111.12 (13)C11—N4—H4125.3 (12)
C11—C12—C7120.85 (14)
N1—C1—C2—C31.8 (3)C8—C7—C12—N32.6 (3)
C1—C2—C3—C4−1.7 (3)C6—C7—C12—N3−177.08 (14)
C2—C3—C4—C5−0.6 (2)N3—C13—C14—C19−175.68 (15)
C2—C3—C4—C11−178.91 (16)N4—C13—C14—C195.7 (2)
C3—C4—C5—N13.1 (2)N3—C13—C14—C155.1 (2)
C11—C4—C5—N1−178.52 (14)N4—C13—C14—C15−173.46 (15)
C3—C4—C5—C6−175.51 (14)C19—C14—C15—C16−0.9 (3)
C11—C4—C5—C62.9 (2)C13—C14—C15—C16178.34 (16)
N1—C5—C6—N21.5 (2)C14—C15—C16—C170.9 (3)
C4—C5—C6—N2−179.89 (14)C15—C16—C17—C18−0.1 (3)
N1—C5—C6—C7−176.74 (14)C15—C16—C17—C20179.85 (17)
C4—C5—C6—C71.9 (2)C16—C17—C18—C19−0.5 (3)
N2—C6—C7—C8−2.1 (2)C20—C17—C18—C19179.49 (17)
C5—C6—C7—C8176.11 (15)C17—C18—C19—C140.5 (3)
N2—C6—C7—C12177.60 (14)C15—C14—C19—C180.3 (3)
C5—C6—C7—C12−4.2 (2)C13—C14—C19—C18−178.97 (15)
C6—C7—C8—C91.9 (3)C2—C1—N1—C50.6 (3)
C12—C7—C8—C9−177.75 (16)C4—C5—N1—C1−3.0 (2)
C7—C8—C9—C10−0.6 (3)C6—C5—N1—C1175.60 (15)
C8—C9—C10—N2−0.6 (3)C9—C10—N2—C60.5 (3)
C3—C4—C11—C12172.70 (15)C7—C6—N2—C100.9 (3)
C5—C4—C11—C12−5.6 (2)C5—C6—N2—C10−177.34 (17)
C3—C4—C11—N4−4.5 (3)N4—C13—N3—C121.02 (17)
C5—C4—C11—N4177.23 (15)C14—C13—N3—C12−177.72 (14)
N4—C11—C12—N30.13 (17)C11—C12—N3—C13−0.70 (17)
C4—C11—C12—N3−177.65 (13)C7—C12—N3—C13178.22 (15)
N4—C11—C12—C7−178.88 (13)N3—C13—N4—C11−0.97 (17)
C4—C11—C12—C73.3 (2)C14—C13—N4—C11177.76 (14)
C8—C7—C12—C11−178.62 (15)C12—C11—N4—C130.48 (16)
C6—C7—C12—C111.7 (2)C4—C11—N4—C13178.01 (15)
D—H···AD—HH···AD···AD—H···A
N4—H4···N1i0.908 (19)2.106 (19)3.0131 (19)176.0 (17)
C1—H1···N3ii0.932.573.479 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯N1i0.908 (19)2.106 (19)3.0131 (19)176.0 (17)
C1—H1⋯N3ii0.932.573.479 (2)165

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A highly selective OFF-ON fluorescent sensor for zinc in aqueous solution and living cells.

Authors:  Huili Chen; Wei Gao; Miaoli Zhu; Hongfei Gao; Jinfang Xue; Yingqi Li
Journal:  Chem Commun (Camb)       Date:  2010-10-06       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, characterization, and protein tyrosine phosphatases inhibition activities of oxovanadium(IV) complexes with Schiff base and polypyridyl derivatives.

Authors:  Caixia Yuan; Liping Lu; Yanbo Wu; Zhiwei Liu; Maolin Guo; Shu Xing; Xueqi Fu; Miaoli Zhu
Journal:  J Inorg Biochem       Date:  2010-05-15       Impact factor: 4.155

4.  Crystal structure and nuclease activity of mono(1,10-phenanthroline) copper complex.

Authors:  Li-Ping Lu; Miao-Li Zhu; Pin Yang
Journal:  J Inorg Biochem       Date:  2003-05-01       Impact factor: 4.155

5.  Ternary oxovanadium(IV) complexes of ONO-donor Schiff base and polypyridyl derivatives as protein tyrosine phosphatase inhibitors: synthesis, characterization, and biological activities.

Authors:  Caixia Yuan; Liping Lu; Xiaoli Gao; Yanbo Wu; Maolin Guo; Ying Li; Xueqi Fu; Miaoli Zhu
Journal:  J Biol Inorg Chem       Date:  2009-03-17       Impact factor: 3.358

6.  Bis(mu-1,10-phenanthrolin-2-olato-kappa3N,N':O)dicopper(I)(Cu-Cu) monohydrate.

Authors:  Li-Ping Lu; Si-Si Feng; Hong-Mei Zhang; Miao-Li Zhu
Journal:  Acta Crystallogr C       Date:  2004-05-31       Impact factor: 1.172

7.  Chloro(L-glutamato-kappa 2N,O)(1,10-phenanthroline-kappa 2,N')copper(II) monohydrate.

Authors:  Li-Ping Lu; Miao-Li Zhu; Pin Yang
Journal:  Acta Crystallogr C       Date:  2003-12-13       Impact factor: 1.172

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.