Literature DB >> 21754136

10-Phenyl-6b,7,8,9,9a,10-hexa-hydro-6H-cyclo-penta-[4,5]pyrano[3,2-c]chromen-6,9-dione.

Zhen Qiao1, Li Liu, Dong Wang.   

Abstract

In the title compound, C(21)H(16)O(4), the dihedral angle between the phenyl ring and the 2H-chromene ring system is 59.8 (2)°. The crystal packing is stabilized by weak π-π stacking inter-actions [centroid-centroid distances = 3.667 (2) Å] and inter-molecular C-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2011        PMID: 21754136      PMCID: PMC3099813          DOI: 10.1107/S1600536811006192

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of coumarin, see: Vu et al. (2008 ▶); Maresca et al. (2009 ▶); Maresca et al. (2010 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C21H16O4 M = 332.34 Monoclinic, a = 9.1672 (14) Å b = 8.6538 (14) Å c = 19.899 (3) Å β = 91.295 (3)° V = 1578.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.50 × 0.50 × 0.41 mm

Data collection

Rigaku Saturn724+ CCD diffractometer Absorption correction: numerical (CrystalClear; Rigaku, 2007 ▶) T min = 0.953, T max = 0.961 13128 measured reflections 3608 independent reflections 3469 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.144 S = 1.10 3608 reflections 226 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811006192/hg2800sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006192/hg2800Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H16O4F(000) = 696
Mr = 332.34Dx = 1.399 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4768 reflections
a = 9.1672 (14) Åθ = 1.0–27.5°
b = 8.6538 (14) ŵ = 0.10 mm1
c = 19.899 (3) ÅT = 173 K
β = 91.295 (3)°Block, colorless
V = 1578.2 (4) Å30.50 × 0.50 × 0.41 mm
Z = 4
Rigaku Saturn724+ CCD diffractometer3608 independent reflections
Radiation source: sealed tube3469 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scans at fixed χ = 45°θmax = 27.5°, θmin = 3.1°
Absorption correction: numerical (CrystalClear; Rigaku, 2007)h = −11→11
Tmin = 0.953, Tmax = 0.961k = −10→11
13128 measured reflectionsl = −22→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0704P)2 + 0.6329P] where P = (Fo2 + 2Fc2)/3
3608 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.50827 (10)0.14483 (13)0.10143 (5)0.0292 (2)
O20.30494 (11)0.31578 (13)−0.06936 (5)0.0342 (3)
O30.21059 (14)−0.10952 (16)0.24113 (6)0.0472 (3)
O40.09368 (13)0.21341 (18)−0.04206 (7)0.0509 (4)
C10.45295 (15)0.33318 (17)−0.05937 (7)0.0293 (3)
C20.52778 (18)0.41320 (18)−0.10830 (8)0.0344 (3)
H2A0.47730.4543−0.14650.041*
C30.67665 (18)0.43206 (18)−0.10057 (8)0.0358 (3)
H3A0.72890.4869−0.13370.043*
C40.75115 (17)0.37144 (19)−0.04468 (8)0.0358 (3)
H4A0.85380.3846−0.04000.043*
C50.67574 (16)0.29218 (18)0.00397 (8)0.0321 (3)
H5A0.72670.25120.04200.039*
C60.52458 (15)0.27221 (16)−0.00277 (7)0.0268 (3)
C70.43568 (15)0.19240 (16)0.04545 (7)0.0260 (3)
C80.41941 (15)0.10574 (17)0.15850 (7)0.0275 (3)
H8A0.37650.20250.17710.033*
C90.29535 (15)−0.00278 (17)0.13564 (7)0.0289 (3)
H9A0.3352−0.10370.11980.035*
C100.18782 (18)−0.02793 (19)0.19294 (8)0.0356 (3)
C110.0505 (2)0.0604 (3)0.17786 (11)0.0564 (5)
H11A0.02240.12270.21730.068*
H11B−0.0305−0.01100.16610.068*
C120.08425 (18)0.1647 (2)0.11868 (9)0.0412 (4)
H12A0.12310.26560.13420.049*
H12B−0.00390.18240.09000.049*
C130.20060 (15)0.07317 (18)0.08039 (7)0.0308 (3)
H13A0.1506−0.01000.05370.037*
C140.29132 (15)0.16801 (17)0.03381 (7)0.0285 (3)
C150.22106 (16)0.22987 (19)−0.02619 (8)0.0343 (3)
C160.51992 (15)0.03462 (17)0.21074 (7)0.0274 (3)
C170.62801 (17)−0.06787 (19)0.19234 (8)0.0360 (3)
H17A0.6423−0.08960.14620.043*
C180.71543 (18)−0.1389 (2)0.24094 (9)0.0440 (4)
H18A0.7886−0.21010.22800.053*
C190.69637 (19)−0.1066 (2)0.30784 (9)0.0453 (4)
H19A0.7564−0.15530.34110.054*
C200.59009 (19)−0.0033 (2)0.32673 (8)0.0413 (4)
H20A0.57750.01940.37290.050*
C210.50157 (17)0.06724 (18)0.27822 (7)0.0325 (3)
H21A0.42830.13800.29130.039*
U11U22U33U12U13U23
O10.0241 (5)0.0389 (6)0.0247 (5)−0.0026 (4)0.0003 (4)0.0033 (4)
O20.0283 (5)0.0438 (6)0.0306 (5)0.0048 (4)0.0013 (4)0.0074 (4)
O30.0493 (7)0.0534 (8)0.0387 (6)−0.0192 (6)0.0001 (5)0.0139 (5)
O40.0280 (6)0.0765 (10)0.0478 (7)−0.0013 (6)−0.0061 (5)0.0182 (6)
C10.0289 (7)0.0296 (7)0.0295 (7)0.0032 (5)0.0043 (5)−0.0011 (5)
C20.0418 (8)0.0309 (7)0.0307 (7)0.0054 (6)0.0077 (6)0.0029 (6)
C30.0416 (8)0.0309 (7)0.0356 (8)−0.0024 (6)0.0145 (6)0.0004 (6)
C40.0303 (7)0.0372 (8)0.0402 (8)−0.0051 (6)0.0093 (6)−0.0060 (6)
C50.0281 (7)0.0369 (8)0.0315 (7)−0.0019 (6)0.0028 (5)−0.0040 (6)
C60.0261 (7)0.0279 (7)0.0264 (6)0.0002 (5)0.0044 (5)−0.0029 (5)
C70.0256 (6)0.0274 (7)0.0251 (6)0.0016 (5)0.0007 (5)−0.0012 (5)
C80.0263 (6)0.0307 (7)0.0256 (6)−0.0004 (5)0.0042 (5)−0.0006 (5)
C90.0291 (7)0.0273 (7)0.0303 (7)−0.0015 (5)0.0017 (5)−0.0004 (5)
C100.0367 (8)0.0374 (8)0.0327 (7)−0.0132 (6)0.0032 (6)0.0016 (6)
C110.0377 (9)0.0749 (14)0.0572 (11)0.0069 (9)0.0193 (8)0.0207 (10)
C120.0290 (7)0.0491 (10)0.0460 (9)0.0061 (7)0.0093 (6)0.0064 (7)
C130.0251 (7)0.0342 (7)0.0332 (7)−0.0023 (5)0.0004 (5)0.0018 (6)
C140.0261 (7)0.0326 (7)0.0269 (6)0.0019 (5)0.0023 (5)0.0009 (5)
C150.0266 (7)0.0431 (9)0.0333 (7)0.0032 (6)0.0009 (6)0.0046 (6)
C160.0270 (6)0.0284 (7)0.0267 (7)−0.0024 (5)0.0001 (5)−0.0003 (5)
C170.0346 (8)0.0390 (8)0.0345 (8)0.0058 (6)0.0007 (6)−0.0031 (6)
C180.0330 (8)0.0438 (9)0.0550 (10)0.0062 (7)−0.0019 (7)0.0089 (8)
C190.0363 (8)0.0534 (10)0.0456 (9)−0.0102 (7)−0.0133 (7)0.0196 (8)
C200.0456 (9)0.0494 (10)0.0288 (7)−0.0187 (8)−0.0053 (6)0.0039 (7)
C210.0363 (8)0.0328 (7)0.0287 (7)−0.0073 (6)0.0031 (6)−0.0022 (6)
O1—C71.3491 (17)C9—H9A1.0000
O1—C81.4524 (16)C10—C111.498 (3)
O2—C11.3751 (17)C11—C121.521 (3)
O2—C151.3828 (18)C11—H11A0.9900
O3—C101.205 (2)C11—H11B0.9900
O4—C151.2112 (19)C12—C131.543 (2)
C1—C21.389 (2)C12—H12A0.9900
C1—C61.394 (2)C12—H12B0.9900
C2—C31.380 (2)C13—C141.503 (2)
C2—H2A0.9500C13—H13A1.0000
C3—C41.394 (2)C14—C151.446 (2)
C3—H3A0.9500C16—C171.385 (2)
C4—C51.384 (2)C16—C211.386 (2)
C4—H4A0.9500C17—C181.386 (2)
C5—C61.3999 (19)C17—H17A0.9500
C5—H5A0.9500C18—C191.375 (3)
C6—C71.4483 (19)C18—H18A0.9500
C7—C141.3548 (19)C19—C201.380 (3)
C8—C161.5050 (19)C19—H19A0.9500
C8—C91.5359 (19)C20—C211.388 (2)
C8—H8A1.0000C20—H20A0.9500
C9—C131.534 (2)C21—H21A0.9500
C9—C101.540 (2)
C7—O1—C8116.22 (10)C12—C11—H11A110.6
C1—O2—C15121.99 (11)C10—C11—H11B110.6
O2—C1—C2117.04 (13)C12—C11—H11B110.6
O2—C1—C6121.37 (12)H11A—C11—H11B108.7
C2—C1—C6121.59 (14)C11—C12—C13103.48 (14)
C3—C2—C1118.94 (14)C11—C12—H12A111.1
C3—C2—H2A120.5C13—C12—H12A111.1
C1—C2—H2A120.5C11—C12—H12B111.1
C2—C3—C4120.66 (14)C13—C12—H12B111.1
C2—C3—H3A119.7H12A—C12—H12B109.0
C4—C3—H3A119.7C14—C13—C9111.33 (12)
C5—C4—C3120.06 (14)C14—C13—C12114.99 (13)
C5—C4—H4A120.0C9—C13—C12104.62 (12)
C3—C4—H4A120.0C14—C13—H13A108.6
C4—C5—C6120.20 (14)C9—C13—H13A108.6
C4—C5—H5A119.9C12—C13—H13A108.6
C6—C5—H5A119.9C7—C14—C15119.90 (13)
C1—C6—C5118.54 (13)C7—C14—C13122.11 (13)
C1—C6—C7116.98 (12)C15—C14—C13117.96 (13)
C5—C6—C7124.48 (13)O4—C15—O2116.59 (14)
O1—C7—C14123.74 (13)O4—C15—C14125.49 (15)
O1—C7—C6114.72 (12)O2—C15—C14117.93 (13)
C14—C7—C6121.54 (13)C17—C16—C21119.32 (14)
O1—C8—C16106.85 (11)C17—C16—C8120.64 (13)
O1—C8—C9109.60 (11)C21—C16—C8120.00 (13)
C16—C8—C9113.09 (12)C16—C17—C18120.36 (15)
O1—C8—H8A109.1C16—C17—H17A119.8
C16—C8—H8A109.1C18—C17—H17A119.8
C9—C8—H8A109.1C19—C18—C17120.06 (17)
C13—C9—C8110.72 (12)C19—C18—H18A120.0
C13—C9—C10103.28 (12)C17—C18—H18A120.0
C8—C9—C10110.45 (12)C18—C19—C20120.08 (15)
C13—C9—H9A110.7C18—C19—H19A120.0
C8—C9—H9A110.7C20—C19—H19A120.0
C10—C9—H9A110.7C19—C20—C21120.03 (15)
O3—C10—C11126.03 (15)C19—C20—H20A120.0
O3—C10—C9124.73 (16)C21—C20—H20A120.0
C11—C10—C9109.21 (13)C16—C21—C20120.14 (15)
C10—C11—C12105.83 (13)C16—C21—H21A119.9
C10—C11—H11A110.6C20—C21—H21A119.9
C15—O2—C1—C2175.79 (14)C8—C9—C13—C1436.94 (16)
C15—O2—C1—C6−3.8 (2)C10—C9—C13—C14155.18 (12)
O2—C1—C2—C3−179.40 (13)C8—C9—C13—C12−87.86 (14)
C6—C1—C2—C30.2 (2)C10—C9—C13—C1230.38 (15)
C1—C2—C3—C40.2 (2)C11—C12—C13—C14−159.98 (15)
C2—C3—C4—C5−0.4 (2)C11—C12—C13—C9−37.54 (17)
C3—C4—C5—C60.1 (2)O1—C7—C14—C15176.95 (13)
O2—C1—C6—C5179.16 (13)C6—C7—C14—C15−3.5 (2)
C2—C1—C6—C5−0.4 (2)O1—C7—C14—C13−5.1 (2)
O2—C1—C6—C7−1.1 (2)C6—C7—C14—C13174.40 (13)
C2—C1—C6—C7179.32 (13)C9—C13—C14—C7−6.2 (2)
C4—C5—C6—C10.3 (2)C12—C13—C14—C7112.55 (16)
C4—C5—C6—C7−179.48 (14)C9—C13—C14—C15171.73 (13)
C8—O1—C7—C14−17.6 (2)C12—C13—C14—C15−69.51 (18)
C8—O1—C7—C6162.78 (12)C1—O2—C15—O4−175.20 (15)
C1—C6—C7—O1−175.67 (12)C1—O2—C15—C145.1 (2)
C5—C6—C7—O14.1 (2)C7—C14—C15—O4178.92 (16)
C1—C6—C7—C144.7 (2)C13—C14—C15—O40.9 (3)
C5—C6—C7—C14−175.52 (14)C7—C14—C15—O2−1.4 (2)
C7—O1—C8—C16171.88 (11)C13—C14—C15—O2−179.35 (13)
C7—O1—C8—C949.00 (16)O1—C8—C16—C17−40.89 (18)
O1—C8—C9—C13−58.49 (15)C9—C8—C16—C1779.79 (17)
C16—C8—C9—C13−177.59 (11)O1—C8—C16—C21141.38 (13)
O1—C8—C9—C10−172.27 (12)C9—C8—C16—C21−97.94 (15)
C16—C8—C9—C1068.63 (15)C21—C16—C17—C181.0 (2)
C13—C9—C10—O3165.87 (15)C8—C16—C17—C18−176.74 (15)
C8—C9—C10—O3−75.70 (19)C16—C17—C18—C19−0.8 (3)
C13—C9—C10—C11−12.28 (18)C17—C18—C19—C200.1 (3)
C8—C9—C10—C11106.14 (16)C18—C19—C20—C210.4 (3)
O3—C10—C11—C12170.98 (17)C17—C16—C21—C20−0.5 (2)
C9—C10—C11—C12−10.9 (2)C8—C16—C21—C20177.23 (13)
C10—C11—C12—C1329.6 (2)C19—C20—C21—C16−0.2 (2)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O3i1.002.453.4042 (19)160
C17—H17A···O2ii0.952.543.322 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯O3i1.002.453.4042 (19)160
C17—H17A⋯O2ii0.952.543.322 (2)140

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Direct screening of natural product extracts using mass spectrometry.

Authors:  Hoan Vu; Ngoc B Pham; Ronald J Quinn
Journal:  J Biomol Screen       Date:  2008-03-18

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Non-zinc mediated inhibition of carbonic anhydrases: coumarins are a new class of suicide inhibitors.

Authors:  Alfonso Maresca; Claudia Temperini; Hoan Vu; Ngoc B Pham; Sally-Ann Poulsen; Andrea Scozzafava; Ronald J Quinn; Claudiu T Supuran
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

4.  Deciphering the mechanism of carbonic anhydrase inhibition with coumarins and thiocoumarins.

Authors:  Alfonso Maresca; Claudia Temperini; Lionel Pochet; Bernard Masereel; Andrea Scozzafava; Claudiu T Supuran
Journal:  J Med Chem       Date:  2010-01-14       Impact factor: 7.446

  4 in total

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