Literature DB >> 21754123

N'-(2-Bromo-5-hy-droxy-4-meth-oxy-benzyl-idene)-3,5-dihy-droxy-benzo-hydrazide methanol monosolvate.

Zong-Gui Wang, Ling Yuan, Li Zhou, Yi Nan.   

Abstract

In the crystal structure of the title compound, C(15)H(13)BrN(2)O(5)·CH(3)OH, the methanol solvent mol-ecule links symmetry-related mol-ecules through O-H⋯O and N-H⋯O hydrogen bonds. Further inter-molecular O-H⋯O hydrogen bonds link symmetry-related mol-ecules, leading to the formation of a three-dimensional network. Two of the H atoms involved in hydrogen bonding are disordered. The dihedral angle between the rings is 5.64 (14)°.

Entities:  

Year:  2011        PMID: 21754123      PMCID: PMC3099906          DOI: 10.1107/S1600536811008695

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a Schiff base with potential anti­bacterial properties. For the anti­bacterial and anti­tumor activity of Schiff base complexes, see: Brückner et al. (2000 ▶); Harrop et al. (2003 ▶); Ren et al. (2002 ▶). For related structures, see: Diao (2007 ▶); Diao et al. (2007 ▶); Huang et al. (2007 ▶); Li et al. (2007 ▶).

Experimental

Crystal data

C15H13BrN2O5·CH4O M = 413.23 Monoclinic, a = 7.4242 (17) Å b = 17.709 (4) Å c = 12.927 (3) Å β = 96.493 (3)° V = 1688.7 (6) Å3 Z = 4 Mo Kα radiation μ = 2.47 mm−1 T = 296 K 0.47 × 0.24 × 0.19 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.488, T max = 0.616 9884 measured reflections 3780 independent reflections 2569 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.111 S = 1.01 3780 reflections 231 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811008695/kj2170sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008695/kj2170Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13BrN2O5·CH4OF(000) = 840
Mr = 413.23Dx = 1.625 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2413 reflections
a = 7.4242 (17) Åθ = 2.3–25.8°
b = 17.709 (4) ŵ = 2.47 mm1
c = 12.927 (3) ÅT = 296 K
β = 96.493 (3)°Block, colorless
V = 1688.7 (6) Å30.47 × 0.24 × 0.19 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3780 independent reflections
Radiation source: fine-focus sealed tube2569 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 27.2°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −9→9
Tmin = 0.488, Tmax = 0.616k = −14→22
9884 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0482P)2 + 0.8829P] where P = (Fo2 + 2Fc2)/3
3780 reflections(Δ/σ)max = 0.001
231 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br10.38821 (6)0.687078 (19)0.54748 (3)0.05529 (16)
O10.6149 (3)0.58020 (13)0.91725 (17)0.0527 (6)
O20.5254 (4)0.43891 (13)0.86339 (18)0.0652 (8)
H2A0.61650.44220.90540.098*0.50
H2B0.48840.43380.92040.098*0.50
O30.1127 (4)0.31210 (12)0.42579 (17)0.0541 (7)
O4−0.2407 (4)0.19793 (12)0.12235 (16)0.0501 (6)
H4A−0.28040.19330.06090.075*
O5−0.1488 (4)0.45108 (14)0.01335 (18)0.0636 (8)
H5A−0.09420.49140.01800.095*0.50
H5B−0.23270.4458−0.03300.095*0.50
N10.2142 (3)0.44876 (14)0.49680 (17)0.0348 (6)
N20.1270 (3)0.43712 (14)0.39748 (18)0.0354 (6)
H20.10710.47740.36080.059 (11)*
C10.3706 (4)0.53397 (16)0.6178 (2)0.0314 (7)
C20.4255 (4)0.60688 (16)0.6447 (2)0.0327 (7)
C30.5083 (4)0.62529 (17)0.7431 (2)0.0370 (7)
H3A0.54280.67480.75900.044*
C40.5387 (4)0.56937 (17)0.8169 (2)0.0373 (7)
C50.4914 (5)0.49492 (17)0.7916 (2)0.0394 (8)
C60.4093 (4)0.47768 (17)0.6937 (2)0.0367 (7)
H6A0.37870.42780.67740.044*
C7−0.0144 (4)0.35570 (16)0.2601 (2)0.0311 (7)
C8−0.0809 (4)0.28403 (17)0.2367 (2)0.0343 (7)
H8A−0.06430.24590.28630.041*
C9−0.1723 (4)0.26884 (16)0.1392 (2)0.0323 (7)
C10−0.1920 (4)0.32480 (16)0.0639 (2)0.0326 (7)
H10A−0.24970.3146−0.00230.039*
C11−0.1249 (4)0.39546 (17)0.0888 (2)0.0369 (7)
C12−0.0367 (4)0.41262 (16)0.1864 (2)0.0345 (7)
H12A0.00620.46110.20190.041*
C130.6728 (5)0.6544 (2)0.9486 (3)0.0553 (10)
H13A0.76280.67150.90620.083*
H13B0.72370.65361.02030.083*
H13C0.57100.68820.94060.083*
C140.2758 (4)0.51463 (17)0.5154 (2)0.0350 (7)
H14A0.26070.55120.46360.042*
C150.0798 (4)0.36657 (17)0.3681 (2)0.0329 (7)
O60.0298 (5)0.58875 (17)0.3072 (3)0.0832 (9)
H6−0.05330.60680.33590.125*
C160.0995 (12)0.6427 (4)0.2480 (5)0.156 (4)
H16A0.00790.65880.19420.234*
H16B0.20050.62220.21710.234*
H16C0.13910.68500.29110.234*
U11U22U33U12U13U23
Br10.0774 (3)0.0372 (2)0.0484 (2)−0.00523 (18)−0.00500 (17)0.01134 (15)
O10.0713 (17)0.0449 (14)0.0359 (12)−0.0053 (12)−0.0200 (11)−0.0098 (10)
O20.103 (2)0.0426 (14)0.0412 (13)−0.0058 (14)−0.0278 (13)0.0078 (11)
O30.0851 (19)0.0325 (12)0.0368 (12)−0.0003 (12)−0.0268 (12)0.0045 (10)
O40.0834 (19)0.0339 (13)0.0286 (11)−0.0130 (11)−0.0126 (12)−0.0003 (9)
O50.094 (2)0.0457 (15)0.0418 (13)−0.0179 (13)−0.0316 (13)0.0206 (11)
N10.0415 (15)0.0358 (14)0.0241 (12)0.0030 (12)−0.0085 (11)−0.0049 (10)
N20.0475 (16)0.0300 (13)0.0255 (12)0.0015 (11)−0.0101 (11)−0.0012 (11)
C10.0342 (17)0.0315 (16)0.0276 (14)−0.0011 (12)0.0001 (12)−0.0036 (12)
C20.0336 (17)0.0299 (15)0.0343 (15)0.0019 (13)0.0024 (13)0.0029 (12)
C30.0408 (19)0.0288 (16)0.0398 (17)−0.0038 (13)−0.0030 (14)−0.0074 (13)
C40.0387 (19)0.0387 (17)0.0320 (16)0.0009 (14)−0.0075 (13)−0.0084 (13)
C50.052 (2)0.0307 (16)0.0328 (16)0.0003 (14)−0.0086 (14)−0.0008 (13)
C60.0444 (19)0.0268 (15)0.0365 (16)−0.0030 (13)−0.0058 (14)−0.0042 (12)
C70.0333 (17)0.0329 (16)0.0250 (14)0.0037 (13)−0.0058 (12)−0.0037 (12)
C80.0463 (19)0.0302 (15)0.0244 (14)0.0036 (13)−0.0050 (13)0.0011 (12)
C90.0408 (19)0.0263 (15)0.0286 (15)0.0003 (13)−0.0015 (13)−0.0041 (12)
C100.0369 (17)0.0381 (17)0.0205 (13)−0.0013 (13)−0.0065 (12)0.0003 (12)
C110.0421 (19)0.0345 (17)0.0315 (15)−0.0014 (14)−0.0074 (13)0.0074 (13)
C120.0417 (18)0.0279 (15)0.0306 (15)−0.0030 (13)−0.0101 (13)−0.0007 (12)
C130.058 (2)0.050 (2)0.054 (2)−0.0051 (18)−0.0111 (18)−0.0216 (18)
C140.0421 (19)0.0341 (16)0.0273 (15)−0.0006 (14)−0.0020 (13)−0.0013 (12)
C150.0357 (18)0.0360 (16)0.0251 (14)0.0019 (13)−0.0052 (12)−0.0031 (12)
O60.093 (3)0.0608 (19)0.095 (2)0.0126 (16)0.0061 (19)0.0034 (17)
C160.276 (10)0.091 (5)0.119 (5)0.061 (5)0.094 (6)0.051 (4)
Br1—C21.896 (3)C4—C51.394 (4)
O1—C41.368 (3)C5—C61.375 (4)
O1—C131.428 (4)C6—H6A0.9300
O2—C51.362 (4)C7—C81.383 (4)
O2—H2A0.8200C7—C121.384 (4)
O2—H2B0.8200C7—C151.501 (4)
O3—C151.227 (3)C8—C91.388 (4)
O4—C91.363 (3)C8—H8A0.9300
O4—H4A0.8200C9—C101.385 (4)
O5—C111.383 (3)C10—C111.372 (4)
O5—H5A0.8200C10—H10A0.9300
O5—H5B0.8200C11—C121.388 (4)
N1—C141.266 (4)C12—H12A0.9300
N1—N21.386 (3)C13—H13A0.9600
N2—C151.341 (4)C13—H13B0.9600
N2—H20.8600C13—H13C0.9600
C1—C21.386 (4)C14—H14A0.9300
C1—C61.405 (4)O6—C161.362 (6)
C1—C141.468 (4)O6—H60.8200
C2—C31.388 (4)C16—H16A0.9600
C3—C41.376 (4)C16—H16B0.9600
C3—H3A0.9300C16—H16C0.9600
C4—O1—C13118.5 (3)C7—C8—H8A119.9
C5—O2—H2A118.4C9—C8—H8A119.9
C5—O2—H2B129.6O4—C9—C10122.6 (3)
H2A—O2—H2B75.4O4—C9—C8117.3 (2)
C9—O4—H4A109.5C10—C9—C8120.1 (3)
C11—O5—H5A123.0C11—C10—C9118.8 (3)
C11—O5—H5B117.4C11—C10—H10A120.6
H5A—O5—H5B118.8C9—C10—H10A120.6
C14—N1—N2115.7 (2)C10—C11—O5118.0 (3)
C15—N2—N1118.7 (2)C10—C11—C12122.3 (3)
C15—N2—H2126.4O5—C11—C12119.7 (3)
N1—N2—H2114.8C7—C12—C11118.3 (3)
C2—C1—C6117.1 (3)C7—C12—H12A120.9
C2—C1—C14122.7 (3)C11—C12—H12A120.9
C6—C1—C14120.2 (3)O1—C13—H13A109.5
C1—C2—C3122.4 (3)O1—C13—H13B109.5
C1—C2—Br1121.0 (2)H13A—C13—H13B109.5
C3—C2—Br1116.6 (2)O1—C13—H13C109.5
C4—C3—C2119.2 (3)H13A—C13—H13C109.5
C4—C3—H3A120.4H13B—C13—H13C109.5
C2—C3—H3A120.4N1—C14—C1120.8 (3)
O1—C4—C3125.0 (3)N1—C14—H14A119.6
O1—C4—C5114.9 (3)C1—C14—H14A119.6
C3—C4—C5120.0 (3)O3—C15—N2122.2 (3)
O2—C5—C6119.6 (3)O3—C15—C7120.3 (3)
O2—C5—C4120.4 (3)N2—C15—C7117.5 (2)
C6—C5—C4120.0 (3)C16—O6—H6109.5
C5—C6—C1121.3 (3)O6—C16—H16A109.5
C5—C6—H6A119.4O6—C16—H16B109.5
C1—C6—H6A119.4H16A—C16—H16B109.5
C8—C7—C12120.4 (2)O6—C16—H16C109.5
C8—C7—C15116.0 (2)H16A—C16—H16C109.5
C12—C7—C15123.6 (3)H16B—C16—H16C109.5
C7—C8—C9120.2 (3)
C14—N1—N2—C15171.4 (3)C15—C7—C8—C9179.1 (3)
C6—C1—C2—C3−2.7 (5)C7—C8—C9—O4−177.4 (3)
C14—C1—C2—C3177.2 (3)C7—C8—C9—C102.1 (5)
C6—C1—C2—Br1177.9 (2)O4—C9—C10—C11177.5 (3)
C14—C1—C2—Br1−2.2 (4)C8—C9—C10—C11−2.0 (5)
C1—C2—C3—C40.5 (5)C9—C10—C11—O5−178.8 (3)
Br1—C2—C3—C4179.9 (2)C9—C10—C11—C120.5 (5)
C13—O1—C4—C3−1.8 (5)C8—C7—C12—C11−0.8 (5)
C13—O1—C4—C5177.9 (3)C15—C7—C12—C11179.4 (3)
C2—C3—C4—O1−178.4 (3)C10—C11—C12—C70.9 (5)
C2—C3—C4—C51.9 (5)O5—C11—C12—C7−179.8 (3)
O1—C4—C5—O2−1.5 (5)N2—N1—C14—C1179.9 (3)
C3—C4—C5—O2178.3 (3)C2—C1—C14—N1−173.9 (3)
O1—C4—C5—C6178.3 (3)C6—C1—C14—N15.9 (5)
C3—C4—C5—C6−2.0 (5)N1—N2—C15—O3−0.7 (5)
O2—C5—C6—C1179.5 (3)N1—N2—C15—C7−180.0 (3)
C4—C5—C6—C1−0.3 (5)C8—C7—C15—O38.3 (4)
C2—C1—C6—C52.5 (5)C12—C7—C15—O3−171.9 (3)
C14—C1—C6—C5−177.3 (3)C8—C7—C15—N2−172.4 (3)
C12—C7—C8—C9−0.7 (5)C12—C7—C15—N27.3 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O5i0.822.112.932 (3)180
O2—H2B···O1ii0.822.333.148 (4)180
O4—H4A···O3iii0.821.842.655 (3)175
O5—H5A···O5iv0.822.152.859 (5)145
O5—H5B···O2v0.822.122.932 (3)171
N2—H2···O60.862.152.984 (4)164
O6—H6···O4vi0.822.333.101 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O5i0.822.112.932 (3)180
O2—H2B⋯O1ii0.822.333.148 (4)180
O4—H4A⋯O3iii0.821.842.655 (3)175
O5—H5A⋯O5iv0.822.152.859 (5)145
O5—H5B⋯O2v0.822.122.932 (3)171
N2—H2⋯O60.862.152.984 (4)164
O6—H6⋯O4vi0.822.333.101 (4)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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