Literature DB >> 21754119

Bis(2-amino-pyridinium) 5,5'-disulfanediylbis(1,3,4-thia-diazole-2-thiol-ate) monohydrate.

Pusu Zhao, Zhiyan Guo, Hailian Xiao.   

Abstract

In the crystal of the title compound, 2C(5)H(7)N(2) (+)·C(4)N(4)S(6) (2-)·H(2)O, inter-molecular N-H⋯S and N-H⋯N hydrogen bonds link four cations and two dianions into a centrosymmetric cluster. The crystal packing is further consolidated by π-π inter-actions between the five- and six-membered rings of neighbouring clusters [centroid-centroid distances = 3.692 (3), 3.718 (3), 3.660 (3) and 3.696 (3) Å] and via O-H⋯N, O-H⋯S and N-H⋯O hydrogen bonds involving the uncoordinated water mol-ecules.

Entities:  

Year:  2011        PMID: 21754119      PMCID: PMC3100049          DOI: 10.1107/S1600536811008336

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to supra­molecular compounds, see: Rowsell & Yaghi (2005 ▶); Neville et al. (2008 ▶); Huang et al. (2007 ▶); Burchell et al. (2006 ▶). For related structures, see: Jebas et al. (2006 ▶); Jian et al. (2006 ▶); Banerjee et al. (2006 ▶); Moers et al. (2000 ▶).

Experimental

Crystal data

2C5H7N2 +·C4N4S6 2−·H2O M = 504.71 Monoclinic, a = 7.3109 (15) Å b = 14.112 (3) Å c = 20.930 (4) Å β = 98.13 (3)° V = 2137.8 (7) Å3 Z = 4 Mo Kα radiation μ = 0.67 mm−1 T = 295 K 0.24 × 0.22 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 9377 measured reflections 4911 independent reflections 3931 reflections with I > 2σ(I) R int = 0.023 3 standard reflections every 100 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.086 S = 1.17 4911 reflections 270 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811008336/cv5028sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008336/cv5028Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H7N2+·C4N4S62·H2OF(000) = 1040
Mr = 504.71Dx = 1.568 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 7.3109 (15) Åθ = 4–14°
b = 14.112 (3) ŵ = 0.67 mm1
c = 20.930 (4) ÅT = 295 K
β = 98.13 (3)°Block, colourless
V = 2137.8 (7) Å30.24 × 0.22 × 0.20 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.023
Radiation source: fine-focus sealed tubeθmax = 27.5°, θmin = 1.8°
graphiteh = −9→9
ω scansk = −18→17
9377 measured reflectionsl = −27→27
4911 independent reflections3 standard reflections every 100 reflections
3931 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.17w = 1/[σ2(Fo2) + (0.0278P)2 + 0.2825P] where P = (Fo2 + 2Fc2)/3
4911 reflections(Δ/σ)max = 0.001
270 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.40901 (12)0.94077 (5)0.59925 (3)0.0364 (2)
S20.26262 (10)0.84201 (4)0.47444 (3)0.02842 (17)
S30.18855 (10)0.64715 (4)0.40985 (3)0.02446 (15)
S40.37606 (10)0.66357 (4)0.34565 (3)0.02432 (15)
S50.29173 (9)0.86996 (4)0.30034 (3)0.02237 (15)
S60.12212 (10)0.98806 (4)0.18451 (3)0.02636 (16)
N1−0.1312 (3)0.89557 (15)0.04470 (11)0.0380 (6)
H1A−0.07160.91750.08000.046*
H1B−0.18100.93390.01530.046*
N2−0.0676 (3)0.74324 (14)0.08195 (10)0.0251 (5)
H2A−0.00600.76700.11630.030*
N30.6664 (4)0.84178 (15)0.72187 (11)0.0387 (6)
H3A0.60440.85930.68580.046*
H3B0.71330.88350.74930.046*
N40.6138 (3)0.68622 (14)0.69089 (10)0.0237 (5)
H4A0.55200.70640.65550.028*
N50.4136 (3)0.75310 (14)0.57420 (9)0.0231 (5)
N60.3619 (3)0.68528 (14)0.52826 (9)0.0231 (5)
N70.1864 (3)0.72209 (14)0.23431 (10)0.0254 (5)
N80.1316 (3)0.79840 (14)0.19588 (9)0.0247 (5)
C1−0.0815 (4)0.64796 (18)0.07686 (13)0.0314 (6)
H1C−0.02600.60980.11040.038*
C2−0.1754 (4)0.60765 (19)0.02344 (14)0.0349 (7)
H2B−0.18560.54210.01980.042*
C3−0.2571 (4)0.66701 (19)−0.02635 (13)0.0322 (6)
H3C−0.32230.6405−0.06340.039*
C4−0.2419 (4)0.76228 (18)−0.02103 (12)0.0260 (6)
H4B−0.29450.8010−0.05460.031*
C5−0.1462 (4)0.80276 (17)0.03563 (12)0.0247 (6)
C60.6319 (4)0.59150 (17)0.70022 (12)0.0249 (6)
H6B0.57930.55030.66810.030*
C70.7250 (4)0.55568 (18)0.75551 (12)0.0274 (6)
H7B0.73640.49060.76200.033*
C80.8036 (4)0.62005 (19)0.80266 (12)0.0282 (6)
H8B0.86780.59720.84110.034*
C90.7875 (4)0.71541 (18)0.79316 (12)0.0266 (6)
H9A0.84100.75710.82480.032*
C100.6895 (4)0.75046 (18)0.73512 (12)0.0250 (6)
C110.3711 (4)0.84127 (17)0.55446 (12)0.0247 (5)
C120.2803 (4)0.72031 (16)0.47427 (11)0.0216 (5)
C130.2721 (3)0.74813 (16)0.29047 (11)0.0205 (5)
C140.1749 (3)0.88218 (17)0.22216 (11)0.0197 (5)
O1W0.3564 (3)0.48901 (14)0.56202 (10)0.0342 (5)
H2W10.371 (5)0.542 (3)0.5504 (17)0.058 (12)*
H1W10.293 (5)0.498 (2)0.5915 (18)0.055 (12)*
U11U22U33U12U13U23
S10.0584 (6)0.0233 (3)0.0242 (4)0.0096 (3)−0.0051 (3)−0.0068 (3)
S20.0413 (4)0.0220 (3)0.0193 (3)0.0082 (3)−0.0047 (3)−0.0003 (2)
S30.0300 (4)0.0230 (3)0.0191 (3)−0.0054 (3)−0.0009 (3)−0.0009 (2)
S40.0292 (4)0.0247 (3)0.0178 (3)0.0056 (3)−0.0008 (3)0.0005 (2)
S50.0259 (4)0.0225 (3)0.0169 (3)−0.0031 (3)−0.0033 (3)−0.0015 (2)
S60.0318 (4)0.0221 (3)0.0233 (3)−0.0021 (3)−0.0025 (3)0.0033 (2)
N10.0514 (17)0.0233 (11)0.0325 (13)−0.0013 (11)−0.0176 (12)0.0000 (9)
N20.0286 (13)0.0262 (11)0.0180 (11)−0.0024 (9)−0.0053 (9)−0.0025 (8)
N30.0507 (17)0.0279 (12)0.0316 (13)−0.0065 (11)−0.0146 (12)−0.0018 (9)
N40.0251 (13)0.0281 (11)0.0159 (10)−0.0007 (9)−0.0035 (9)−0.0007 (8)
N50.0300 (13)0.0223 (10)0.0157 (10)0.0003 (9)−0.0011 (9)−0.0004 (8)
N60.0275 (13)0.0221 (10)0.0187 (11)−0.0015 (9)−0.0004 (9)0.0005 (8)
N70.0345 (14)0.0214 (11)0.0184 (10)0.0005 (9)−0.0030 (10)−0.0006 (8)
N80.0325 (14)0.0220 (10)0.0170 (11)−0.0012 (9)−0.0052 (9)−0.0003 (8)
C10.0382 (18)0.0242 (14)0.0312 (15)0.0003 (12)0.0024 (13)0.0047 (11)
C20.0412 (19)0.0233 (13)0.0400 (17)−0.0050 (12)0.0053 (14)−0.0069 (11)
C30.0278 (16)0.0399 (16)0.0282 (14)−0.0052 (12)0.0010 (12)−0.0121 (11)
C40.0232 (15)0.0342 (14)0.0191 (13)0.0012 (11)−0.0023 (11)−0.0019 (10)
C50.0228 (15)0.0274 (13)0.0227 (13)−0.0019 (11)−0.0012 (11)−0.0026 (10)
C60.0241 (15)0.0272 (13)0.0235 (13)−0.0001 (11)0.0032 (11)−0.0044 (10)
C70.0249 (15)0.0290 (13)0.0286 (14)0.0047 (11)0.0050 (12)0.0023 (11)
C80.0204 (14)0.0443 (16)0.0200 (13)0.0036 (12)0.0031 (11)0.0049 (11)
C90.0226 (15)0.0355 (15)0.0203 (13)−0.0033 (11)−0.0021 (11)−0.0044 (10)
C100.0232 (15)0.0266 (13)0.0248 (13)−0.0041 (11)0.0017 (11)−0.0042 (10)
C110.0288 (15)0.0274 (13)0.0174 (12)0.0038 (11)0.0016 (11)−0.0008 (10)
C120.0247 (14)0.0212 (12)0.0180 (12)−0.0013 (10)0.0002 (10)−0.0030 (9)
C130.0222 (14)0.0215 (12)0.0174 (12)0.0018 (10)0.0009 (10)0.0008 (9)
C140.0189 (13)0.0248 (12)0.0152 (12)−0.0007 (10)0.0013 (10)0.0005 (9)
O1W0.0491 (15)0.0229 (11)0.0295 (12)−0.0011 (9)0.0022 (10)0.0002 (8)
S1—C111.689 (3)N6—C121.299 (3)
S2—C121.722 (2)N7—C131.304 (3)
S2—C111.749 (3)N7—N81.370 (3)
S3—C121.754 (2)N8—C141.324 (3)
S3—S42.0638 (11)C1—C21.352 (4)
S4—C131.757 (2)C1—H1C0.9300
S5—C131.735 (2)C2—C31.403 (4)
S5—C141.744 (2)C2—H2B0.9300
S6—C141.708 (2)C3—C41.352 (4)
N1—C51.326 (3)C3—H3C0.9300
N1—H1A0.8600C4—C51.410 (3)
N1—H1B0.8600C4—H4B0.9300
N2—C51.348 (3)C6—C71.355 (4)
N2—C11.351 (3)C6—H6B0.9300
N2—H2A0.8600C7—C81.403 (4)
N3—C101.324 (3)C7—H7B0.9300
N3—H3A0.8600C8—C91.363 (4)
N3—H3B0.8600C8—H8B0.9300
N4—C61.355 (3)C9—C101.410 (4)
N4—C101.356 (3)C9—H9A0.9300
N4—H4A0.8600O1W—H2W10.80 (4)
N5—C111.334 (3)O1W—H1W10.83 (4)
N5—N61.371 (3)
Cg1···Cg3i3.692 (3)Cg2···Cg4iii3.660 (3)
Cg1···Cg3ii3.718 (3)Cg2···Cg4iv3.696 (3)
C12—S2—C1188.39 (12)N1—C5—N2119.6 (2)
C12—S3—S4102.56 (9)N1—C5—C4122.8 (2)
C13—S4—S3103.82 (9)N2—C5—C4117.6 (2)
C13—S5—C1488.00 (11)N4—C6—C7121.2 (2)
C5—N1—H1A120.0N4—C6—H6B119.4
C5—N1—H1B120.0C7—C6—H6B119.4
H1A—N1—H1B120.0C6—C7—C8117.7 (2)
C5—N2—C1122.9 (2)C6—C7—H7B121.1
C5—N2—H2A118.5C8—C7—H7B121.1
C1—N2—H2A118.5C9—C8—C7121.2 (2)
C10—N3—H3A120.0C9—C8—H8B119.4
C10—N3—H3B120.0C7—C8—H8B119.4
H3A—N3—H3B120.0C8—C9—C10119.7 (2)
C6—N4—C10122.6 (2)C8—C9—H9A120.2
C6—N4—H4A118.7C10—C9—H9A120.2
C10—N4—H4A118.7N3—C10—N4118.7 (2)
C11—N5—N6113.89 (19)N3—C10—C9123.8 (2)
C12—N6—N5113.05 (19)N4—C10—C9117.5 (2)
C13—N7—N8111.79 (19)N5—C11—S1126.22 (19)
C14—N8—N7115.17 (19)N5—C11—S2110.88 (18)
N2—C1—C2120.5 (3)S1—C11—S2122.88 (15)
N2—C1—H1C119.8N6—C12—S2113.78 (18)
C2—C1—H1C119.8N6—C12—S3121.56 (18)
C1—C2—C3118.4 (2)S2—C12—S3124.59 (14)
C1—C2—H2B120.8N7—C13—S5114.06 (17)
C3—C2—H2B120.8N7—C13—S4120.60 (18)
C4—C3—C2120.7 (3)S5—C13—S4125.02 (14)
C4—C3—H3C119.6N8—C14—S6124.38 (18)
C2—C3—H3C119.6N8—C14—S5110.99 (17)
C3—C4—C5119.8 (2)S6—C14—S5124.63 (14)
C3—C4—H4B120.1H2W1—O1W—H1W1102 (3)
C5—C4—H4B120.1
C12—S3—S4—C13−98.27 (12)N6—N5—C11—S2−0.5 (3)
C11—N5—N6—C12−0.4 (3)C12—S2—C11—N50.9 (2)
C13—N7—N8—C140.1 (3)C12—S2—C11—S1−177.71 (19)
C5—N2—C1—C20.7 (4)N5—N6—C12—S21.1 (3)
N2—C1—C2—C30.2 (4)N5—N6—C12—S3−175.97 (18)
C1—C2—C3—C40.1 (5)C11—S2—C12—N6−1.1 (2)
C2—C3—C4—C5−1.2 (4)C11—S2—C12—S3175.82 (19)
C1—N2—C5—N1178.1 (3)S4—S3—C12—N6−106.0 (2)
C1—N2—C5—C4−1.9 (4)S4—S3—C12—S277.26 (17)
C3—C4—C5—N1−177.9 (3)N8—N7—C13—S50.1 (3)
C3—C4—C5—N22.1 (4)N8—N7—C13—S4−173.73 (18)
C10—N4—C6—C71.2 (4)C14—S5—C13—N7−0.1 (2)
N4—C6—C7—C8−0.5 (4)C14—S5—C13—S4173.34 (18)
C6—C7—C8—C9−0.2 (4)S3—S4—C13—N7−100.7 (2)
C7—C8—C9—C100.3 (4)S3—S4—C13—S586.25 (17)
C6—N4—C10—N3179.5 (2)N7—N8—C14—S6−179.89 (19)
C6—N4—C10—C9−1.1 (4)N7—N8—C14—S5−0.2 (3)
C8—C9—C10—N3179.7 (3)C13—S5—C14—N80.2 (2)
C8—C9—C10—N40.3 (4)C13—S5—C14—S6179.88 (18)
N6—N5—C11—S1178.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···S60.862.633.488 (3)177
N2—H2A···N80.861.872.726 (3)171
N3—H3A···S10.862.433.273 (3)166
N4—H4A···N50.861.972.826 (3)179
O1W—H2W1···N60.80 (4)2.07 (4)2.860 (3)169 (4)
N1—H1B···O1Wv0.862.072.898 (3)162
O1W—H1W1···S6iv0.83 (4)2.47 (4)3.294 (3)175 (3)
N3—H3B···S6vi0.862.493.338 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯S60.862.633.488 (3)177
N2—H2A⋯N80.861.872.726 (3)171
N3—H3A⋯S10.862.433.273 (3)166
N4—H4A⋯N50.861.972.826 (3)179
O1W—H2W1⋯N60.80 (4)2.07 (4)2.860 (3)169 (4)
N1—H1B⋯O1Wi0.862.072.898 (3)162
O1W—H1W1⋯S6ii0.83 (4)2.47 (4)3.294 (3)175 (3)
N3—H3B⋯S6iii0.862.493.338 (2)171

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Strategies for hydrogen storage in metal--organic frameworks.

Authors:  Jesse L C Rowsell; Omar M Yaghi
Journal:  Angew Chem Int Ed Engl       Date:  2005-07-25       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Single-crystal to single-crystal structural transformation and photomagnetic properties of a porous iron(II) spin-crossover framework.

Authors:  Suzanne M Neville; Gregory J Halder; Karena W Chapman; Martin B Duriska; Peter D Southon; John D Cashion; Jean-François Létard; Boujemaa Moubaraki; Keith S Murray; Cameron J Kepert
Journal:  J Am Chem Soc       Date:  2008-02-07       Impact factor: 15.419

  3 in total

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