| Literature DB >> 21754094 |
Sebla Dinçer, Gonca Gönülalan, Barış Tercan, Tuncer Hökelek.
Abstract
In the title compound, C(8)H(7)N(4)O(4) (+)·Cl(-), the cation possesses twofold symmetry, with the twofold axis bis-ecting the 2-methyl-5,6-dinitro-benzimidazolium cation. The methyl H atoms are disordered about this twofold axis and were assigned equal half-occupancies. The chloride anion also lies on a twofold axis. In the crystal, N-H⋯Cl and C-H⋯O hydrogen bonds link the ions to form a three-dimensional network.Entities:
Year: 2011 PMID: 21754094 PMCID: PMC3100037 DOI: 10.1107/S1600536811008105
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H7N4O4+·Cl− | |
| Orthorhombic, | Mo |
| Hall symbol: C 2c 2 | Cell parameters from 2425 reflections |
| θ = 2.8–28.2° | |
| µ = 0.37 mm−1 | |
| Block, yellow | |
| 0.46 × 0.40 × 0.20 mm |
| Bruker Kappa APEXII CCD area-detector diffractometer | 1302 independent reflections |
| Radiation source: fine-focus sealed tube | 1264 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.3°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 3043 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1302 reflections | Δρmax = 0.27 e Å−3 |
| 83 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 517 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.10 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Cl1 | 0.38240 (8) | 0.0000 | 0.5000 | 0.02165 (12) | |
| O1 | 0.9799 (2) | 0.31462 (5) | 0.62135 (10) | 0.0235 (2) | |
| O2 | 0.5726 (2) | 0.27552 (5) | 0.60594 (10) | 0.0234 (2) | |
| N1 | 0.8093 (2) | 0.27227 (6) | 0.64031 (11) | 0.0174 (2) | |
| N2 | 0.8329 (2) | 0.03251 (5) | 0.68250 (10) | 0.0133 (2) | |
| H2A | 0.712 (4) | 0.0200 (10) | 0.628 (2) | 0.035 (6)* | |
| C1 | 0.8975 (3) | 0.21173 (6) | 0.70323 (11) | 0.0143 (2) | |
| C2 | 0.7865 (3) | 0.15455 (7) | 0.65679 (12) | 0.0146 (3) | |
| H2 | 0.6486 | 0.1545 | 0.5963 | 0.018* | |
| C3 | 0.8933 (3) | 0.09724 (6) | 0.70596 (11) | 0.0124 (2) | |
| C4 | 1.0000 | −0.00475 (10) | 0.7500 | 0.0143 (3) | |
| C5 | 1.0000 | −0.07722 (10) | 0.7500 | 0.0207 (4) | |
| H5A | 0.8609 | −0.0929 | 0.6937 | 0.031* | 0.50 |
| H5B | 0.9666 | −0.0929 | 0.8351 | 0.031* | 0.50 |
| H5C | 1.1726 | −0.0929 | 0.7211 | 0.031* | 0.50 |
| Cl1 | 0.01317 (19) | 0.0379 (3) | 0.01385 (18) | 0.000 | 0.000 | −0.00422 (19) |
| O1 | 0.0284 (5) | 0.0159 (5) | 0.0261 (5) | −0.0007 (4) | 0.0058 (4) | 0.0042 (4) |
| O2 | 0.0231 (5) | 0.0213 (5) | 0.0259 (5) | 0.0069 (4) | −0.0046 (4) | 0.0017 (4) |
| N1 | 0.0222 (6) | 0.0145 (5) | 0.0156 (5) | 0.0036 (5) | 0.0015 (4) | 0.0010 (4) |
| N2 | 0.0137 (5) | 0.0129 (5) | 0.0133 (5) | −0.0011 (4) | 0.0006 (4) | −0.0010 (4) |
| C1 | 0.0145 (6) | 0.0127 (6) | 0.0157 (5) | 0.0026 (5) | 0.0030 (5) | 0.0019 (4) |
| C2 | 0.0133 (5) | 0.0169 (6) | 0.0137 (5) | 0.0015 (5) | 0.0000 (4) | 0.0009 (5) |
| C3 | 0.0129 (5) | 0.0125 (6) | 0.0117 (5) | −0.0009 (5) | 0.0026 (5) | −0.0007 (4) |
| C4 | 0.0145 (7) | 0.0154 (9) | 0.0131 (7) | 0.000 | 0.0035 (6) | 0.000 |
| C5 | 0.0250 (10) | 0.0110 (9) | 0.0261 (10) | 0.000 | 0.0025 (8) | 0.000 |
| N1—O1 | 1.2259 (16) | C2—H2 | 0.9300 |
| N1—O2 | 1.2260 (16) | C3—C3i | 1.401 (3) |
| N1—C1 | 1.4692 (17) | C4—N2 | 1.3275 (16) |
| N2—C3 | 1.3801 (16) | C4—N2i | 1.3275 (16) |
| N2—H2A | 0.86 (2) | C4—C5 | 1.483 (3) |
| C1—C1i | 1.409 (3) | C5—H5A | 0.9600 |
| C2—C1 | 1.3808 (18) | C5—H5B | 0.9600 |
| C2—C3 | 1.3855 (18) | C5—H5C | 0.9600 |
| O1—N1—O2 | 124.84 (12) | N2—C3—C2 | 131.66 (12) |
| O1—N1—C1 | 117.67 (11) | N2—C3—C3i | 106.24 (7) |
| O2—N1—C1 | 117.41 (11) | C2—C3—C3i | 122.08 (8) |
| C3—N2—H2A | 123.5 (14) | N2i—C4—N2 | 109.87 (17) |
| C4—N2—C3 | 108.82 (12) | N2i—C4—C5 | 125.07 (9) |
| C4—N2—H2A | 127.6 (14) | N2—C4—C5 | 125.07 (9) |
| C1i—C1—N1 | 121.63 (7) | C4—C5—H5A | 109.5 |
| C2—C1—N1 | 116.07 (11) | C4—C5—H5B | 109.5 |
| C2—C1—C1i | 122.02 (8) | C4—C5—H5C | 109.5 |
| C1—C2—C3 | 115.83 (12) | H5A—C5—H5B | 109.5 |
| C1—C2—H2 | 122.1 | H5A—C5—H5C | 109.5 |
| C3—C2—H2 | 122.1 | H5B—C5—H5C | 109.5 |
| O1—N1—C1—C1i | 33.8 (2) | C3—C2—C1—N1 | 172.73 (11) |
| O1—N1—C1—C2 | −140.30 (13) | C3—C2—C1—C1i | −1.3 (2) |
| O2—N1—C1—C1i | −149.18 (15) | C1—C2—C3—N2 | 179.82 (13) |
| O2—N1—C1—C2 | 36.76 (17) | C1—C2—C3—C3i | −2.1 (2) |
| C4—N2—C3—C2 | 177.52 (13) | N2i—C4—N2—C3 | 0.32 (6) |
| C4—N2—C3—C3i | −0.81 (16) | C5—C4—N2—C3 | −179.68 (6) |
| H··· | ||||
| N2—H2A···Cl1 | 0.86 (2) | 2.15 (2) | 3.008 (1) | 172.5 (18) |
| C2—H2···O1ii | 0.93 | 2.51 | 3.339 (2) | 150 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 (2) | 2.15 (2) | 3.008 (1) | 172.5 (18) |
| C2—H2⋯O1i | 0.93 | 2.51 | 3.339 (2) | 150 |
Symmetry code: (i) .