Literature DB >> 21754069

2-Phenyl-8,9,10,11-tetra-hydro-1-benzo-thieno[3,2-e][1,2,4]triazolo[1,5-c]pyrimidine.

Shridhar I Panchamukhi, Nikhath Fathima, I M Khazi, Noor Shahina Begum.   

Abstract

In the title compound, C(17)H(14)N(4)S, the benzothieno moiety is fused at one end of the pyramidine ring while the triazole ring with a phenyl substituent is fused at the other side. The triazole ring is almost planar [maximum deviation = 0.0028 (3) Å] while the cyclo-hexane ring adopts a half-chair conformation. In the crystal, pairs of inter-molecular C-H⋯N hydrogen bonds form centrosymmetric head-to-head dimers, corresponding to an R(2) (2)(8) graph-set motif. Further C-H⋯N inter-actions generate a zigzag chain of mol-ecules along the c axis. The supra-molecular assembly is consolidated by π-π stacking inter-actions [centroid-centroid distance = 3.445 (4) Å].

Entities:  

Year:  2011        PMID: 21754069      PMCID: PMC3099952          DOI: 10.1107/S1600536811007331

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­phenes, benzothio­phenes, pyrimidines and triazolopyrimidines, see: Shishoo & Jain (1992 ▶); Bradbury & Rivett (1991 ▶); Elslager et al. (1981 ▶); Yunosov et al. (1966 ▶); Blain et al. (1982 ▶). For related structures, see: Akkurt et al. (2008 ▶); Buzykin et al. (2008 ▶); Harrison et al. (2006 ▶); Lipson et al. (2006 ▶); Belcher & Squattrito (2006 ▶). For hydrogen-bond motifs, see: Bernstein et al. 1995 ▶). For puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C17H14N4S M = 306.38 Monoclinic, a = 8.6239 (16) Å b = 20.512 (4) Å c = 8.5952 (16) Å β = 111.975 (3)° V = 1410.0 (5) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 296 K 0.18 × 0.16 × 0.16 mm

Data collection

Bruker SMART APEX CCD detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.960, T max = 0.964 8272 measured reflections 3042 independent reflections 2345 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.202 S = 1.25 3042 reflections 199 parameters H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.66 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997) ▶ and CAMERON (Watkin et al., 1996) ▶; software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811007331/pb2056sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811007331/pb2056Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14N4SF(000) = 640
Mr = 306.38Dx = 1.443 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3042 reflections
a = 8.6239 (16) Åθ = 2.6–27.0°
b = 20.512 (4) ŵ = 0.23 mm1
c = 8.5952 (16) ÅT = 296 K
β = 111.975 (3)°Block, white
V = 1410.0 (5) Å30.18 × 0.16 × 0.16 mm
Z = 4
Bruker SMART APEX CCD detector diffractometer3042 independent reflections
Radiation source: fine-focus sealed tube2345 reflections with I > 2σ(I)
graphiteRint = 0.057
ω scansθmax = 27.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −10→11
Tmin = 0.960, Tmax = 0.964k = −26→19
8272 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.202H-atom parameters constrained
S = 1.25w = 1/[σ2(Fo2) + (0.1054P)2] where P = (Fo2 + 2Fc2)/3
3042 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −0.66 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.1145 (3)0.57323 (12)0.5033 (3)0.0166 (6)
C2−0.2370 (3)0.52330 (12)0.4477 (3)0.0160 (6)
C3−0.4107 (3)0.44589 (13)0.3912 (3)0.0163 (6)
C4−0.5006 (3)0.38839 (13)0.4128 (3)0.0177 (6)
C5−0.3157 (3)0.56670 (13)0.1641 (4)0.0205 (6)
H5−0.38570.56350.05170.025*
C6−0.1062 (3)0.61456 (13)0.3786 (4)0.0189 (6)
C70.0023 (3)0.58943 (13)0.6675 (3)0.0174 (6)
C80.0944 (3)0.64270 (13)0.6629 (3)0.0185 (6)
C90.2214 (4)0.67497 (14)0.8139 (4)0.0228 (6)
H9A0.21040.72200.80250.027*
H9B0.33320.66310.82260.027*
C100.1936 (4)0.65306 (15)0.9725 (4)0.0297 (7)
H10A0.28790.66671.07100.036*
H10B0.09400.67390.97600.036*
C110.1742 (4)0.57928 (15)0.9757 (4)0.0292 (7)
H11A0.16420.56671.08030.035*
H11B0.27350.55860.97100.035*
C120.0201 (4)0.55527 (13)0.8282 (3)0.0197 (6)
H12A0.02960.50870.81440.024*
H12B−0.07930.56290.85290.024*
C13−0.6266 (3)0.35972 (13)0.2766 (4)0.0187 (6)
H13−0.65620.37760.16990.022*
C14−0.7074 (4)0.30477 (14)0.3003 (4)0.0216 (6)
H14−0.79200.28620.20910.026*
C15−0.6648 (4)0.27684 (14)0.4573 (4)0.0213 (6)
H15−0.71860.23930.47150.026*
C16−0.5407 (4)0.30559 (15)0.5931 (4)0.0232 (7)
H16−0.51180.28750.69940.028*
C17−0.4598 (3)0.36091 (13)0.5716 (4)0.0211 (6)
H17−0.37730.38000.66380.025*
N1−0.3331 (3)0.52294 (11)0.2782 (3)0.0170 (5)
N2−0.4455 (3)0.47305 (11)0.2407 (3)0.0190 (5)
N3−0.2852 (3)0.47484 (10)0.5218 (3)0.0173 (5)
N4−0.2022 (3)0.61279 (11)0.2114 (3)0.0202 (5)
S10.04561 (9)0.67369 (3)0.46182 (9)0.0205 (3)
U11U22U33U12U13U23
C10.0188 (14)0.0123 (13)0.0200 (14)0.0057 (10)0.0089 (11)0.0046 (10)
C20.0157 (14)0.0168 (13)0.0145 (13)0.0021 (10)0.0044 (11)−0.0027 (10)
C30.0148 (13)0.0135 (13)0.0187 (14)0.0013 (10)0.0039 (11)−0.0001 (10)
C40.0193 (14)0.0158 (13)0.0182 (14)0.0036 (11)0.0072 (11)0.0012 (11)
C50.0211 (15)0.0189 (14)0.0198 (15)−0.0025 (11)0.0057 (12)0.0000 (11)
C60.0203 (15)0.0161 (13)0.0201 (15)0.0041 (11)0.0075 (12)0.0011 (11)
C70.0173 (14)0.0171 (14)0.0169 (14)0.0017 (11)0.0055 (11)−0.0026 (11)
C80.0173 (14)0.0144 (13)0.0216 (15)0.0029 (11)0.0048 (12)−0.0019 (11)
C90.0213 (15)0.0206 (15)0.0240 (16)−0.0038 (11)0.0058 (12)−0.0015 (11)
C100.0335 (18)0.0271 (16)0.0208 (16)−0.0066 (14)0.0015 (14)−0.0032 (13)
C110.0303 (18)0.0312 (17)0.0210 (16)−0.0031 (14)0.0037 (14)0.0018 (13)
C120.0223 (15)0.0164 (14)0.0181 (14)−0.0019 (11)0.0049 (12)−0.0027 (11)
C130.0188 (15)0.0186 (14)0.0174 (14)−0.0007 (11)0.0054 (11)−0.0009 (11)
C140.0193 (15)0.0258 (15)0.0204 (15)−0.0018 (12)0.0081 (12)−0.0041 (12)
C150.0245 (15)0.0165 (14)0.0254 (16)0.0010 (11)0.0123 (13)0.0011 (11)
C160.0215 (16)0.0263 (16)0.0201 (15)−0.0030 (12)0.0059 (12)0.0042 (12)
C170.0174 (15)0.0238 (15)0.0194 (15)−0.0007 (12)0.0039 (12)0.0028 (12)
N10.0164 (12)0.0163 (11)0.0172 (12)−0.0049 (9)0.0047 (10)−0.0015 (9)
N20.0189 (12)0.0180 (12)0.0182 (12)−0.0019 (9)0.0048 (10)−0.0020 (9)
N30.0186 (12)0.0141 (11)0.0192 (12)0.0012 (9)0.0071 (10)0.0012 (9)
N40.0206 (13)0.0204 (12)0.0178 (12)0.0017 (10)0.0050 (10)0.0032 (9)
S10.0209 (4)0.0173 (4)0.0224 (4)−0.0018 (3)0.0071 (3)0.0017 (3)
C1—C61.389 (4)C9—H9A0.9700
C1—C21.420 (4)C9—H9B0.9700
C1—C71.433 (4)C10—C111.524 (4)
C2—N31.329 (3)C10—H10A0.9700
C2—N11.380 (3)C10—H10B0.9700
C3—N21.336 (4)C11—C121.535 (4)
C3—N31.369 (3)C11—H11A0.9700
C3—C41.461 (4)C11—H11B0.9700
C4—C171.395 (4)C12—H12A0.9700
C4—C131.395 (4)C12—H12B0.9700
C5—N41.311 (4)C13—C141.380 (4)
C5—N11.379 (3)C13—H130.9300
C5—H50.9300C14—C151.383 (4)
C6—N41.365 (4)C14—H140.9300
C6—S11.731 (3)C15—C161.386 (4)
C7—C81.360 (4)C15—H150.9300
C7—C121.504 (4)C16—C171.380 (4)
C8—C91.503 (4)C16—H160.9300
C8—S11.739 (3)C17—H170.9300
C9—C101.537 (4)N1—N21.363 (3)
C6—C1—C2115.3 (3)H10A—C10—H10B108.0
C6—C1—C7113.5 (2)C10—C11—C12111.8 (3)
C2—C1—C7131.2 (2)C10—C11—H11A109.3
N3—C2—N1109.3 (2)C12—C11—H11A109.3
N3—C2—C1134.9 (3)C10—C11—H11B109.3
N1—C2—C1115.8 (2)C12—C11—H11B109.3
N2—C3—N3115.8 (2)H11A—C11—H11B107.9
N2—C3—C4121.5 (2)C7—C12—C11111.6 (2)
N3—C3—C4122.7 (2)C7—C12—H12A109.3
C17—C4—C13118.9 (2)C11—C12—H12A109.3
C17—C4—C3119.9 (3)C7—C12—H12B109.3
C13—C4—C3121.2 (3)C11—C12—H12B109.3
N4—C5—N1121.0 (3)H12A—C12—H12B108.0
N4—C5—H5119.5C14—C13—C4119.9 (3)
N1—C5—H5119.5C14—C13—H13120.1
N4—C6—C1127.6 (3)C4—C13—H13120.1
N4—C6—S1121.4 (2)C15—C14—C13121.2 (3)
C1—C6—S1111.0 (2)C15—C14—H14119.4
C8—C7—C1111.1 (2)C13—C14—H14119.4
C8—C7—C12122.8 (2)C14—C15—C16119.0 (3)
C1—C7—C12126.1 (2)C14—C15—H15120.5
C7—C8—C9125.0 (3)C16—C15—H15120.5
C7—C8—S1113.3 (2)C17—C16—C15120.5 (3)
C9—C8—S1121.7 (2)C17—C16—H16119.8
C8—C9—C10109.4 (2)C15—C16—H16119.8
C8—C9—H9A109.8C16—C17—C4120.5 (3)
C10—C9—H9A109.8C16—C17—H17119.7
C8—C9—H9B109.8C4—C17—H17119.7
C10—C9—H9B109.8N2—N1—C5125.3 (2)
H9A—C9—H9B108.2N2—N1—C2110.3 (2)
C11—C10—C9111.2 (3)C5—N1—C2124.5 (2)
C11—C10—H10A109.4C3—N2—N1101.6 (2)
C9—C10—H10A109.4C2—N3—C3103.0 (2)
C11—C10—H10B109.4C5—N4—C6115.7 (2)
C9—C10—H10B109.4C6—S1—C891.09 (13)
C6—C1—C2—N3179.6 (3)C3—C4—C13—C14178.9 (2)
C7—C1—C2—N3−1.3 (5)C4—C13—C14—C15−0.6 (4)
C6—C1—C2—N1−0.9 (3)C13—C14—C15—C161.2 (4)
C7—C1—C2—N1178.1 (3)C14—C15—C16—C17−0.6 (4)
N2—C3—C4—C17179.3 (2)C15—C16—C17—C4−0.5 (4)
N3—C3—C4—C170.2 (4)C13—C4—C17—C161.1 (4)
N2—C3—C4—C13−0.1 (4)C3—C4—C17—C16−178.3 (3)
N3—C3—C4—C13−179.3 (2)N4—C5—N1—N2−179.1 (2)
C2—C1—C6—N40.6 (4)N4—C5—N1—C20.3 (4)
C7—C1—C6—N4−178.7 (3)N3—C2—N1—N2−0.4 (3)
C2—C1—C6—S1179.33 (19)C1—C2—N1—N2−180.0 (2)
C7—C1—C6—S10.1 (3)N3—C2—N1—C5−179.9 (2)
C6—C1—C7—C80.5 (3)C1—C2—N1—C50.5 (4)
C2—C1—C7—C8−178.5 (3)N3—C3—N2—N10.3 (3)
C6—C1—C7—C12178.1 (2)C4—C3—N2—N1−179.0 (2)
C2—C1—C7—C12−1.0 (5)C5—N1—N2—C3179.5 (2)
C1—C7—C8—C9176.4 (2)C2—N1—N2—C30.1 (3)
C12—C7—C8—C9−1.2 (4)N1—C2—N3—C30.5 (3)
C1—C7—C8—S1−1.0 (3)C1—C2—N3—C3180.0 (3)
C12—C7—C8—S1−178.6 (2)N2—C3—N3—C2−0.5 (3)
C7—C8—C9—C10−17.3 (4)C4—C3—N3—C2178.7 (2)
S1—C8—C9—C10159.9 (2)N1—C5—N4—C6−0.7 (4)
C8—C9—C10—C1147.7 (3)C1—C6—N4—C50.3 (4)
C9—C10—C11—C12−62.6 (4)S1—C6—N4—C5−178.4 (2)
C8—C7—C12—C11−11.0 (4)N4—C6—S1—C8178.3 (2)
C1—C7—C12—C11171.7 (3)C1—C6—S1—C8−0.5 (2)
C10—C11—C12—C742.0 (3)C7—C8—S1—C60.9 (2)
C17—C4—C13—C14−0.6 (4)C9—C8—S1—C6−176.6 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5···N2i0.932.503.413 (3)166
C11—H11B···N2ii0.972.823.653 (5)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯N2i0.932.503.413 (3)166
C11—H11B⋯N2ii0.972.823.653 (5)144

Symmetry codes: (i) ; (ii) .

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