Literature DB >> 21754057

3,5-Bis(4-chloro-benzyl-idene)-1-methyl-piperidin-4-one.

Volodymyr V Nesterov, Sergey S Sarkisov, Vladimir Shulaev, Vladimir N Nesterov.   

Abstract

In the title mol-ecule, C(20)H(17)Cl(2)NO, the central heterocyclic ring adopts a flattened boat conformation. The dihedral angles between the planar part of this central heterocyclic ring [maximum deviation = 0.004 (1) Å] and the two almost planar side-chain fragments [maximum deviations = 0.015 (1) and 0.019 (1) Å], that include the aromatic ring and bridging atoms, are 18.1 (1) and 18.0 (1)°. In the crystal, pairs of weak inter-molecular C-H⋯O hydrogen bonds link mol-ecules into inversion dimers that form stacks along the a axis. The structure is further stabilized by weak inter-molecular C-H⋯π inter-actions involving the benzene rings.

Entities:  

Year:  2011        PMID: 21754057      PMCID: PMC3099892          DOI: 10.1107/S1600536811006994

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For non-linear optical organic compounds with two-photon absorption properties and potential biophotonic materials, see: Nesterov et al. (2003 ▶); Nesterov (2004 ▶); Sarkisov et al. (2005 ▶). For the biological importance of 4-piperidone, see: Jia et al. (1988 ▶, 1989 ▶); Dimmock et al. (2001 ▶). For the synthesis of the title compound, see: Dimmock et al. (2001 ▶). For related structures, see: Nesterov (2004 ▶); Nesterov et al. (2003 ▶, 2007a ▶,b ▶,c ▶, 2008 ▶). For weak hydrogen bonds, see: Desiraju & Steiner (1999 ▶). For the van der Waals radius of the H atom, see: Rowland & Taylor (1996 ▶).

Experimental

Crystal data

C20H17Cl2NO M = 358.25 Monoclinic, a = 5.4568 (11) Å b = 13.916 (3) Å c = 22.289 (4) Å β = 90.847 (3)° V = 1692.4 (6) Å3 Z = 4 Mo Kα radiation μ = 0.39 mm−1 T = 100 K 0.23 × 0.18 × 0.08 mm

Data collection

Bruker SMART APEX II CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.916, T max = 0.970 14890 measured reflections 3461 independent reflections 2830 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.080 S = 1.03 3461 reflections 218 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811006994/su2255sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811006994/su2255Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H17Cl2NOF(000) = 744
Mr = 358.25Dx = 1.406 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2327 reflections
a = 5.4568 (11) Åθ = 2.4–25.2°
b = 13.916 (3) ŵ = 0.39 mm1
c = 22.289 (4) ÅT = 100 K
β = 90.847 (3)°Plate, yellow
V = 1692.4 (6) Å30.23 × 0.18 × 0.08 mm
Z = 4
Bruker SMART APEX II CCD diffractometer3461 independent reflections
Radiation source: fine-focus sealed tube2830 reflections with I > 2σ(I)
graphiteRint = 0.042
ω scansθmax = 26.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −6→6
Tmin = 0.916, Tmax = 0.970k = −17→17
14890 measured reflectionsl = −27→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.030P)2 + 0.850P] where P = (Fo2 + 2Fc2)/3
3461 reflections(Δ/σ)max = 0.001
218 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.64148 (8)0.85150 (3)0.742372 (19)0.02375 (12)
Cl20.64623 (9)0.87411 (3)0.01133 (2)0.02727 (13)
O10.1157 (2)0.92396 (9)0.37523 (5)0.0245 (3)
N10.5768 (3)0.71047 (10)0.37453 (6)0.0191 (3)
C10.7423 (4)0.62787 (13)0.37437 (8)0.0245 (4)
H1A0.70700.58630.40870.037*
H1B0.91230.65030.37730.037*
H1C0.71870.59160.33700.037*
C20.6145 (3)0.76651 (12)0.42936 (8)0.0187 (4)
H2A0.78030.79530.42950.022*
H2B0.60230.72390.46480.022*
C30.4243 (3)0.84484 (12)0.43294 (8)0.0172 (4)
C40.3040 (3)0.87585 (12)0.37573 (8)0.0188 (4)
C50.4283 (3)0.84936 (12)0.31884 (8)0.0170 (4)
C60.6202 (3)0.77144 (12)0.32221 (8)0.0183 (4)
H6A0.61320.73210.28520.022*
H6B0.78520.80070.32550.022*
C70.3539 (3)0.89000 (12)0.48316 (8)0.0181 (4)
H7A0.22810.93640.47720.022*
C80.4384 (3)0.87971 (12)0.54539 (8)0.0176 (4)
C90.2897 (3)0.91907 (12)0.59029 (8)0.0190 (4)
H9A0.14380.95190.57880.023*
C100.3496 (3)0.91133 (13)0.65039 (8)0.0201 (4)
H10A0.24540.93740.68000.024*
C110.5648 (3)0.86468 (12)0.66671 (8)0.0187 (4)
C120.7215 (3)0.82827 (12)0.62392 (8)0.0194 (4)
H12A0.87100.79830.63580.023*
C130.6586 (3)0.83584 (12)0.56397 (8)0.0191 (4)
H13A0.76620.81090.53470.023*
C140.3592 (3)0.89801 (12)0.26932 (8)0.0176 (4)
H14A0.23280.94380.27550.021*
C150.4450 (3)0.89257 (12)0.20763 (8)0.0174 (4)
C160.2956 (3)0.93346 (13)0.16272 (8)0.0204 (4)
H16A0.14950.96550.17390.024*
C170.3543 (3)0.92871 (13)0.10259 (8)0.0206 (4)
H17A0.24910.95600.07280.025*
C180.5693 (3)0.88342 (12)0.08676 (8)0.0192 (4)
C190.7270 (3)0.84500 (12)0.12966 (8)0.0199 (4)
H19A0.87600.81550.11810.024*
C200.6655 (3)0.84995 (12)0.18978 (8)0.0191 (4)
H20A0.77420.82410.21930.023*
U11U22U33U12U13U23
Cl10.0283 (3)0.0252 (2)0.0177 (2)0.00033 (19)0.00000 (17)−0.00001 (17)
Cl20.0321 (3)0.0321 (3)0.0177 (2)0.0028 (2)0.00405 (18)0.00208 (18)
O10.0208 (7)0.0300 (7)0.0229 (7)0.0082 (6)0.0024 (5)0.0004 (6)
N10.0227 (8)0.0170 (7)0.0175 (7)0.0018 (6)0.0019 (6)0.0001 (6)
C10.0325 (11)0.0186 (9)0.0226 (10)0.0051 (8)0.0020 (8)0.0000 (7)
C20.0185 (9)0.0194 (9)0.0181 (9)0.0016 (7)0.0020 (7)0.0010 (7)
C30.0154 (8)0.0177 (9)0.0187 (9)−0.0027 (7)0.0025 (7)0.0016 (7)
C40.0177 (9)0.0164 (9)0.0224 (9)−0.0014 (7)0.0021 (7)−0.0005 (7)
C50.0151 (8)0.0172 (8)0.0187 (9)−0.0016 (7)−0.0007 (7)−0.0023 (7)
C60.0180 (9)0.0196 (9)0.0173 (9)0.0020 (7)0.0017 (7)−0.0005 (7)
C70.0161 (8)0.0173 (8)0.0209 (9)0.0005 (7)0.0016 (7)0.0022 (7)
C80.0190 (9)0.0154 (8)0.0186 (9)−0.0025 (7)0.0028 (7)0.0002 (7)
C90.0158 (9)0.0175 (9)0.0237 (9)0.0014 (7)0.0015 (7)−0.0002 (7)
C100.0198 (9)0.0211 (9)0.0197 (9)−0.0013 (7)0.0049 (7)−0.0030 (7)
C110.0214 (9)0.0175 (9)0.0172 (9)−0.0038 (7)0.0008 (7)−0.0005 (7)
C120.0161 (9)0.0191 (9)0.0229 (9)0.0004 (7)−0.0001 (7)0.0009 (7)
C130.0185 (9)0.0198 (9)0.0193 (9)0.0005 (7)0.0056 (7)−0.0025 (7)
C140.0153 (8)0.0160 (8)0.0215 (9)−0.0001 (7)0.0001 (7)−0.0021 (7)
C150.0181 (9)0.0154 (8)0.0188 (9)−0.0028 (7)0.0007 (7)−0.0010 (7)
C160.0189 (9)0.0195 (9)0.0229 (9)0.0014 (7)0.0011 (7)0.0008 (7)
C170.0204 (9)0.0213 (9)0.0199 (9)−0.0006 (7)−0.0033 (7)0.0035 (7)
C180.0229 (9)0.0173 (9)0.0176 (9)−0.0046 (7)0.0027 (7)0.0009 (7)
C190.0175 (9)0.0192 (9)0.0230 (9)−0.0017 (7)0.0019 (7)−0.0004 (7)
C200.0177 (9)0.0193 (9)0.0202 (9)−0.0005 (7)−0.0015 (7)0.0013 (7)
Cl1—C111.7412 (18)C8—C91.408 (2)
Cl2—C181.7437 (18)C9—C101.378 (2)
O1—C41.226 (2)C9—H9A0.9500
N1—C21.462 (2)C10—C111.386 (2)
N1—C11.462 (2)C10—H10A0.9500
N1—C61.464 (2)C11—C121.386 (2)
C1—H1A0.9800C12—C131.379 (2)
C1—H1B0.9800C12—H12A0.9500
C1—H1C0.9800C13—H13A0.9500
C2—C31.508 (2)C14—C151.461 (2)
C2—H2A0.9900C14—H14A0.9500
C2—H2B0.9900C15—C161.402 (2)
C3—C71.345 (2)C15—C201.404 (2)
C3—C41.489 (2)C16—C171.384 (2)
C4—C51.493 (2)C16—H16A0.9500
C5—C141.344 (2)C17—C181.382 (2)
C5—C61.509 (2)C17—H17A0.9500
C6—H6A0.9900C18—C191.385 (2)
C6—H6B0.9900C19—C201.388 (2)
C7—C81.462 (2)C19—H19A0.9500
C7—H7A0.9500C20—H20A0.9500
C8—C131.405 (2)
C2—N1—C1110.01 (14)C10—C9—C8121.96 (16)
C2—N1—C6109.53 (14)C10—C9—H9A119.0
C1—N1—C6110.27 (13)C8—C9—H9A119.0
N1—C1—H1A109.5C9—C10—C11118.66 (16)
N1—C1—H1B109.5C9—C10—H10A120.7
H1A—C1—H1B109.5C11—C10—H10A120.7
N1—C1—H1C109.5C10—C11—C12121.30 (16)
H1A—C1—H1C109.5C10—C11—Cl1119.61 (13)
H1B—C1—H1C109.5C12—C11—Cl1119.09 (14)
N1—C2—C3109.96 (14)C13—C12—C11119.45 (16)
N1—C2—H2A109.7C13—C12—H12A120.3
C3—C2—H2A109.7C11—C12—H12A120.3
N1—C2—H2B109.7C12—C13—C8121.23 (16)
C3—C2—H2B109.7C12—C13—H13A119.4
H2A—C2—H2B108.2C8—C13—H13A119.4
C7—C3—C4116.71 (16)C5—C14—C15131.05 (16)
C7—C3—C2125.96 (16)C5—C14—H14A114.5
C4—C3—C2117.33 (15)C15—C14—H14A114.5
O1—C4—C3121.64 (16)C16—C15—C20117.43 (16)
O1—C4—C5121.21 (16)C16—C15—C14117.37 (15)
C3—C4—C5117.10 (15)C20—C15—C14125.19 (16)
C14—C5—C4116.58 (15)C17—C16—C15122.11 (17)
C14—C5—C6126.10 (16)C17—C16—H16A118.9
C4—C5—C6117.31 (15)C15—C16—H16A118.9
N1—C6—C5109.62 (14)C18—C17—C16118.58 (16)
N1—C6—H6A109.7C18—C17—H17A120.7
C5—C6—H6A109.7C16—C17—H17A120.7
N1—C6—H6B109.7C17—C18—C19121.41 (16)
C5—C6—H6B109.7C17—C18—Cl2119.84 (14)
H6A—C6—H6B108.2C19—C18—Cl2118.75 (14)
C3—C7—C8130.82 (17)C18—C19—C20119.40 (16)
C3—C7—H7A114.6C18—C19—H19A120.3
C8—C7—H7A114.6C20—C19—H19A120.3
C13—C8—C9117.31 (16)C19—C20—C15120.99 (16)
C13—C8—C7125.35 (16)C19—C20—H20A119.5
C9—C8—C7117.31 (16)C15—C20—H20A119.5
Cg1 and Cg2 are the centroids of the C15–C20 and C8–C13 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C9—H9A···O1i0.952.473.210 (2)135
C12—H12A···Cg1ii0.952.723.439 (2)133
C19—H19A···Cg2iii0.952.733.432 (2)131
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C15–C20 and C8–C13 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9A⋯O1i0.952.473.210 (2)135
C12—H12ACg1ii0.952.723.439 (2)133
C19—H19ACg2iii0.952.733.432 (2)131

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  3,5-bis[4-(diethylamino)benzylidene]-1-methyl-4-piperidone and 3,5-bis[4-(diethylamino)cinnamylidene]-1-methyl-4-piperidone: prospective biophotonic materials.

Authors:  Vladimir N Nesterov; Tatiana V Timofeeva; Sergey S Sarkisov; Alexander Leyderman; Charles Y C Lee; Mikhail Yu Antipin
Journal:  Acta Crystallogr C       Date:  2003-10-11       Impact factor: 1.172

2.  3,5-Bis{3-[4-(dimethylamino)phenyl]prop-2-enylidene}-1-methyl-4-piperidone and 3,5-bis[3-(4-methoxyphenyl)prop-2-enylidene]-1-methyl-4-piperidone: potential biophotonic materials.

Authors:  Vladimir N Nesterov; Lev N Zakharov; Sergey S Sarkisov; Michael J Curley; Augustine Urbas
Journal:  Acta Crystallogr C       Date:  2008-01-22       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  3,5-Bis(4-methoxybenzylidene)-1-methyl-4-piperidone and 3,5-bis(4-methoxybenzylidene)-1-methyl-4-oxopiperidinium chloride: potential biophotonic materials.

Authors:  Vladimir N Nesterov
Journal:  Acta Crystallogr C       Date:  2004-10-22       Impact factor: 1.172

5.  A conformational and structure-activity relationship study of cytotoxic 3,5-bis(arylidene)-4-piperidones and related N-acryloyl analogues.

Authors:  J R Dimmock; M P Padmanilayam; R N Puthucode; A J Nazarali; N L Motaganahalli; G A Zello; J W Quail; E O Oloo; H B Kraatz; J S Prisciak; T M Allen; C L Santos; J Balzarini; E De Clercq; E K Manavathu
Journal:  J Med Chem       Date:  2001-02-15       Impact factor: 7.446

  5 in total
  4 in total

1.  1-Benzyl-3,5-bis-(4-chloro-benzyl-idene)piperidin-4-one.

Authors:  Volodymyr V Nesterov; Sergey S Sarkisov; Vladimir Shulaev; Vladimir N Nesterov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

2.  (4Z,6Z)-4,6-Bis(4-meth-oxy-benzyl-idene)-2,2-dimethyl-1,3-dioxan-5-one.

Authors:  Mohammad M Mojtahedi; Werner Massa; M Saeed Abaee; A Wahid Mesbah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

3.  Crystal structure of (3E,5E)-3,5-bis-[4-(di-ethyl-aza-nium-yl)benzyl-idene]-1-methyl-4-oxopiperidin-1-ium trichloride dihydrate: a potential biophotonic material.

Authors:  Volodymyr V Nesterov; Lev N Zakharov; Vladimir N Nesterov; Vladimir Shulaev
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-21

4.  Crystal structures of 3,5-bis-[(E)-3-hy-droxy-benzyl-idene]-1-methyl-piperidin-4-one and 3,5-bis-[(E)-2-chloro-benzyl-idene]-1-methyl-piperidin-4-one.

Authors:  Yum Eryanti; Adel Zamri; Tati Herlina; Unang Supratman; Mohd Mustaqim Rosli; Hoong-Kun Fun
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-11
  4 in total

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