Literature DB >> 21754041

4-[2-(Hydrogen phosphonato)-2-hydroxy-2-phosphonoethyl]pyridinium.

Feng-Lei Wang, Rong-Xin Yuan, Ji-Min Xie.   

Abstract

The title compound, C(7)H(11)NO(7)P(2), exists as a zwitterion in which the positive charge resides on the protonated pyridyl N atom and the negative charge on one of the two phosphate groups. In the crystal, adjacent molcules are linked by O-H⋯O and N-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754041      PMCID: PMC3099945          DOI: 10.1107/S1600536811011408

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal complexes of phospho­nic acids, see: Ma et al. (2008 ▶, 2009 ▶).

Experimental

Crystal data

C7H11NO7P2 M = 283.11 Monoclinic, a = 10.083 (2) Å b = 9.4713 (19) Å c = 11.708 (2) Å β = 94.87 (3)° V = 1114.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.42 mm−1 T = 293 K 0.3 × 0.25 × 0.2 mm

Data collection

Rigaku Mercury diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) ▶ T min = 0.880, T max = 0.92 11137 measured reflections 2548 independent reflections 2093 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.117 S = 1.02 2548 reflections 174 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005) ▶; cell refinement: CrystalClear ▶; data reduction: CrystalClear ▶; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009) ▶. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811011408/ng5136sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011408/ng5136Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H11NO7P2F(000) = 584
Mr = 283.11Dx = 1.688 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 10067 reflections
a = 10.083 (2) Åθ = 3.4–27.6°
b = 9.4713 (19) ŵ = 0.42 mm1
c = 11.708 (2) ÅT = 293 K
β = 94.87 (3)°Block, colorless
V = 1114.1 (4) Å30.3 × 0.25 × 0.2 mm
Z = 4
Rigaku Mercury diffractometer2548 independent reflections
Radiation source: fine-focus sealed tube2093 reflections with I > 2σ(I)
graphiteRint = 0.051
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.3°
dtfind.ref scansh = −13→13
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)k = −12→12
Tmin = 0.880, Tmax = 0.92l = −15→15
11137 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0537P)2 + 1.150P] where P = (Fo2 + 2Fc2)/3
2548 reflections(Δ/σ)max < 0.001
174 parametersΔρmax = 0.30 e Å3
5 restraintsΔρmin = −0.29 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.66199 (6)0.19546 (7)0.09909 (6)0.01961 (18)
P20.87076 (6)0.20407 (7)0.30954 (6)0.01825 (18)
O10.88791 (18)0.0416 (2)0.12393 (16)0.0229 (4)
H1A0.846 (3)−0.021 (3)0.151 (3)0.041 (10)*
O20.81307 (19)0.3435 (2)0.34177 (16)0.0277 (4)
O31.01876 (18)0.1862 (2)0.33689 (16)0.0275 (5)
O40.79155 (19)0.0847 (2)0.36597 (16)0.0258 (4)
H4A0.827 (4)0.008 (3)0.370 (3)0.059 (12)*
O50.58172 (19)0.0799 (2)0.1556 (2)0.0327 (5)
H5A0.613 (4)0.000 (2)0.157 (3)0.069 (14)*
O60.6632 (2)0.1660 (2)−0.02975 (18)0.0341 (5)
H6A0.619 (4)0.218 (4)−0.072 (3)0.059 (13)*
O70.60449 (17)0.33631 (19)0.12698 (17)0.0269 (5)
N11.3345 (2)0.3264 (3)0.1400 (2)0.0362 (6)
H2A1.4152 (19)0.334 (4)0.143 (3)0.058 (12)*
C21.2820 (3)0.2028 (3)0.1039 (3)0.0331 (7)
H21.33740.12750.08940.040*
C31.1465 (3)0.1875 (3)0.0883 (2)0.0279 (6)
H31.10970.10200.06250.033*
C41.0641 (3)0.2998 (3)0.1109 (2)0.0221 (6)
C51.1232 (3)0.4260 (3)0.1492 (3)0.0334 (7)
H51.07050.50240.16620.040*
C61.2600 (3)0.4372 (4)0.1618 (3)0.0413 (8)
H61.29990.52200.18550.050*
C70.9147 (2)0.2907 (3)0.0868 (2)0.0234 (6)
H7A0.89540.27250.00550.028*
H7B0.87770.38260.10230.028*
C80.8396 (2)0.1788 (2)0.1534 (2)0.0166 (5)
U11U22U33U12U13U23
P10.0118 (3)0.0169 (3)0.0293 (4)0.0002 (3)−0.0028 (2)−0.0001 (3)
P20.0170 (3)0.0162 (3)0.0213 (3)0.0004 (3)−0.0001 (2)−0.0024 (3)
O10.0193 (9)0.0172 (10)0.0326 (10)0.0020 (8)0.0050 (8)−0.0043 (8)
O20.0302 (10)0.0183 (10)0.0349 (11)0.0020 (8)0.0048 (8)−0.0068 (8)
O30.0193 (10)0.0355 (11)0.0265 (10)0.0036 (8)−0.0060 (7)−0.0050 (9)
O40.0287 (11)0.0186 (10)0.0310 (10)0.0019 (8)0.0082 (8)0.0040 (8)
O50.0167 (10)0.0234 (12)0.0577 (14)−0.0027 (8)0.0011 (9)0.0076 (10)
O60.0316 (11)0.0390 (13)0.0294 (11)0.0093 (10)−0.0116 (9)−0.0025 (10)
O70.0161 (9)0.0177 (10)0.0466 (12)0.0012 (8)0.0018 (8)−0.0016 (8)
N10.0154 (12)0.0549 (18)0.0386 (15)−0.0072 (12)0.0046 (10)−0.0016 (13)
C20.0199 (14)0.0435 (19)0.0368 (16)0.0047 (13)0.0074 (12)0.0006 (14)
C30.0225 (14)0.0300 (16)0.0319 (15)−0.0022 (12)0.0060 (11)−0.0039 (12)
C40.0180 (13)0.0260 (14)0.0229 (13)−0.0027 (11)0.0051 (10)0.0022 (11)
C50.0240 (15)0.0265 (16)0.0507 (19)−0.0058 (12)0.0094 (13)−0.0057 (14)
C60.0262 (16)0.043 (2)0.055 (2)−0.0144 (15)0.0074 (14)−0.0112 (16)
C70.0144 (12)0.0248 (14)0.0311 (14)−0.0015 (11)0.0021 (10)0.0059 (12)
C80.0129 (11)0.0129 (12)0.0236 (12)0.0017 (9)−0.0004 (9)−0.0007 (10)
P1—O71.5015 (19)N1—C21.339 (4)
P1—O61.535 (2)N1—H2A0.815 (19)
P1—O51.543 (2)C2—C31.371 (4)
P1—C81.855 (2)C2—H20.9300
P2—O21.5038 (19)C3—C41.388 (4)
P2—O31.5090 (19)C3—H30.9300
P2—O41.563 (2)C4—C51.392 (4)
P2—C81.844 (3)C4—C71.512 (3)
O1—C81.440 (3)C5—C61.379 (4)
O1—H1A0.806 (18)C5—H50.9300
O4—H4A0.811 (18)C6—H60.9300
O5—H5A0.821 (19)C7—C81.551 (3)
O6—H6A0.81 (4)C7—H7A0.9700
N1—C61.328 (4)C7—H7B0.9700
O7—P1—O6114.23 (12)C2—C3—H3120.0
O7—P1—O5108.10 (12)C4—C3—H3120.0
O6—P1—O5109.93 (13)C3—C4—C5118.2 (2)
O7—P1—C8112.34 (11)C3—C4—C7121.6 (2)
O6—P1—C8103.49 (12)C5—C4—C7120.1 (2)
O5—P1—C8108.59 (11)C6—C5—C4119.8 (3)
O2—P2—O3116.23 (11)C6—C5—H5120.1
O2—P2—O4107.85 (11)C4—C5—H5120.1
O3—P2—O4111.15 (11)N1—C6—C5119.7 (3)
O2—P2—C8108.99 (11)N1—C6—H6120.2
O3—P2—C8106.16 (11)C5—C6—H6120.2
O4—P2—C8105.97 (11)C4—C7—C8117.8 (2)
C8—O1—H1A112 (2)C4—C7—H7A107.9
P2—O4—H4A116 (3)C8—C7—H7A107.9
P1—O5—H5A117 (3)C4—C7—H7B107.9
P1—O6—H6A117 (3)C8—C7—H7B107.9
C6—N1—C2122.5 (3)H7A—C7—H7B107.2
C6—N1—H2A120 (3)O1—C8—C7107.8 (2)
C2—N1—H2A117 (3)O1—C8—P2108.77 (16)
N1—C2—C3119.8 (3)C7—C8—P2111.14 (17)
N1—C2—H2120.1O1—C8—P1109.33 (16)
C3—C2—H2120.1C7—C8—P1105.54 (16)
C2—C3—C4119.9 (3)P2—C8—P1114.04 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O2i0.81 (2)2.06 (2)2.816 (3)156 (3)
O4—H4A···O7i0.81 (2)1.77 (2)2.574 (3)176 (4)
O5—H5A···O2i0.82 (2)1.66 (2)2.477 (3)175 (4)
N1—H2A···O7ii0.82 (2)1.93 (2)2.741 (3)171 (4)
O6—H6A···O3iii0.81 (4)1.67 (4)2.476 (3)175 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O2i0.81 (2)2.06 (2)2.816 (3)156 (3)
O4—H4A⋯O7i0.81 (2)1.77 (2)2.574 (3)176 (4)
O5—H5A⋯O2i0.82 (2)1.66 (2)2.477 (3)175 (4)
N1—H2A⋯O7ii0.82 (2)1.93 (2)2.741 (3)171 (4)
O6—H6A⋯O3iii0.81 (4)1.67 (4)2.476 (3)175 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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