Literature DB >> 21754030

2-Amino-pyrimidinium hydrogen sulfate.

Adel Elboulali, Samah Toumi Akriche, Salem S Al-Deyab, Mohamed Rzaigui.   

Abstract

In the crystal structure of the title compound, C(4)H(6)N(3) (+)·HSO(4) (-), n class="Chemical">hydrogen sulfate anions self-assemble through O-H⋯O hydrogen bonds, forming chains along the b axis, while the cations form centrosymmetric pairs via N-H⋯N hydrogen bonds. The 2-amino-pyrimidinium pairs are linked to the sulfate anions via N-H⋯O hydrogen bonds, forming a two-dimensional network parallel to (10[Formula: see text]). In addition, weak inter-molecular C-H⋯O contacts generate a three-dimensional network.

Entities:  

Year:  2011        PMID: 21754030      PMCID: PMC3099826          DOI: 10.1107/S1600536811011123

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of pyrimidines, see: Rabie et al. (2007 ▶); Rival et al. (1991 ▶). For applications of amino­pyrimidines, see: Rospenk & Koll (2007 ▶). For amino­pyrimidine salts, see: Hemamalini et al. (2005 ▶); Childs et al. (2007 ▶); Lee et al. (2003 ▶); Ye et al. (2002 ▶). For sulfate salts with organic cations, see: Xu et al. (2009a ▶,b ▶).

Experimental

Crystal data

C4H6N3HSO4 M = 193.19 Monoclinic, a = 8.388 (2) Å b = 5.208 (3) Å c = 18.468 (4) Å β = 112.84 (2)° V = 743.6 (5) Å3 Z = 4 Ag Kα radiation λ = 0.56087 Å μ = 0.22 mm−1 T = 293 K 0.25 × 0.21 × 0.15 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 3738 measured reflections 3647 independent reflections 2520 reflections with I > 2σ(I) R int = 0.015 2 standard reflections every 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.159 S = 1.07 3647 reflections 110 parameters H-atom parameters constrained Δρmax = 0.82 e Å−3 Δρmin = −0.71 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995) ▶; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811011123/lh5222sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011123/lh5222Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N3+·HSO4F(000) = 400
Mr = 193.19Dx = 1.726 Mg m3
Monoclinic, P21/cAg Kα radiation, λ = 0.56087 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.388 (2) Åθ = 9–11°
b = 5.208 (3) ŵ = 0.22 mm1
c = 18.468 (4) ÅT = 293 K
β = 112.84 (2)°Prism, colorless
V = 743.6 (5) Å30.25 × 0.21 × 0.15 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.015
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 2.1°
graphiteh = −14→13
non–profiled ω scansk = −8→0
3738 measured reflectionsl = −30→13
3647 independent reflections2 standard reflections every 120 min
2520 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0919P)2 + 0.0037P] where P = (Fo2 + 2Fc2)/3
3647 reflections(Δ/σ)max < 0.001
110 parametersΔρmax = 0.82 e Å3
0 restraintsΔρmin = −0.71 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.67465 (5)−0.13645 (8)0.21545 (2)0.02768 (11)
O10.66596 (17)−0.4361 (3)0.22175 (9)0.0400 (3)
H10.5717−0.47740.22180.060*
O20.5491 (2)−0.0595 (3)0.14085 (8)0.0515 (4)
O30.85241 (16)−0.0898 (3)0.22478 (7)0.0365 (3)
O40.64241 (17)−0.0315 (3)0.28174 (8)0.0408 (3)
N10.9071 (2)0.3742 (3)0.39016 (9)0.0430 (4)
H1A0.89050.49520.41810.052*
H1B0.83900.35830.34160.052*
N21.06403 (19)0.0245 (3)0.37781 (8)0.0319 (3)
H20.99660.01170.32910.038*
N31.1419 (2)0.2419 (3)0.49787 (8)0.0358 (3)
C11.0366 (2)0.2136 (3)0.42160 (9)0.0295 (3)
C21.1941 (2)−0.1444 (3)0.40855 (11)0.0376 (3)
H2A1.2105−0.27370.37740.045*
C31.3011 (3)−0.1248 (4)0.48528 (12)0.0429 (4)
H31.3912−0.24040.50850.051*
C41.2703 (3)0.0753 (4)0.52752 (10)0.0418 (4)
H41.34420.09390.57990.050*
U11U22U33U12U13U23
S0.03166 (18)0.02383 (17)0.02574 (16)−0.00177 (13)0.00914 (13)−0.00139 (13)
O10.0418 (7)0.0245 (5)0.0581 (8)−0.0021 (5)0.0240 (6)−0.0020 (5)
O20.0539 (9)0.0493 (9)0.0337 (6)−0.0035 (7)−0.0023 (6)0.0068 (6)
O30.0380 (6)0.0388 (7)0.0365 (6)−0.0084 (5)0.0186 (5)−0.0057 (5)
O40.0423 (7)0.0420 (7)0.0409 (6)0.0016 (5)0.0192 (5)−0.0115 (5)
N10.0456 (8)0.0428 (9)0.0325 (7)0.0091 (7)0.0062 (6)−0.0061 (6)
N20.0408 (7)0.0292 (6)0.0263 (5)−0.0040 (5)0.0135 (5)−0.0039 (5)
N30.0420 (7)0.0361 (8)0.0250 (6)−0.0001 (6)0.0084 (5)−0.0043 (5)
C10.0361 (7)0.0266 (6)0.0255 (6)−0.0042 (6)0.0116 (5)−0.0025 (5)
C20.0461 (9)0.0287 (7)0.0438 (9)−0.0005 (7)0.0238 (8)−0.0030 (7)
C30.0450 (9)0.0396 (10)0.0436 (9)0.0093 (8)0.0168 (8)0.0075 (8)
C40.0439 (9)0.0468 (10)0.0289 (7)0.0016 (8)0.0078 (7)0.0022 (7)
S—O21.4288 (14)N2—C11.350 (2)
S—O31.4535 (13)N2—H20.8600
S—O41.4588 (13)N3—C41.324 (3)
S—O11.5690 (17)N3—C11.349 (2)
O1—H10.8200C2—C31.355 (3)
N1—C11.314 (2)C2—H2A0.9300
N1—H1A0.8600C3—C41.385 (3)
N1—H1B0.8600C3—H30.9300
N2—C21.343 (2)C4—H40.9300
O2—S—O3113.94 (9)C4—N3—C1117.25 (16)
O2—S—O4113.37 (10)N1—C1—N3119.05 (16)
O3—S—O4110.72 (8)N1—C1—N2120.26 (15)
O2—S—O1108.21 (9)N3—C1—N2120.69 (16)
O3—S—O1103.46 (8)N2—C2—C3119.50 (17)
O4—S—O1106.34 (9)N2—C2—H2A120.3
S—O1—H1109.5C3—C2—H2A120.3
C1—N1—H1A120.0C2—C3—C4116.90 (18)
C1—N1—H1B120.0C2—C3—H3121.5
H1A—N1—H1B120.0C4—C3—H3121.5
C2—N2—C1121.60 (15)N3—C4—C3124.04 (17)
C2—N2—H2119.2N3—C4—H4118.0
C1—N2—H2119.2C3—C4—H4118.0
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.821.792.6100 (19)174
N1—H1B···O1ii0.862.383.140 (2)148
N1—H1B···O40.862.583.155 (2)125
N1—H1A···N3iii0.862.163.017 (2)172
N2—H2···O30.861.912.756 (2)168
C2—H2A···O3iv0.932.403.294 (2)160
C3—H3···O2v0.932.513.262 (3)138
C4—H4···O4vi0.932.533.316 (2)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O4i0.821.792.6100 (19)174
N1—H1B⋯O1ii0.862.383.140 (2)148
N1—H1B⋯O40.862.583.155 (2)125
N1—H1A⋯N3iii0.862.163.017 (2)172
N2—H2⋯O30.861.912.756 (2)168
C2—H2A⋯O3iv0.932.403.294 (2)160
C3—H3⋯O2v0.932.513.262 (3)138
C4—H4⋯O4vi0.932.533.316 (2)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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