| Literature DB >> 21754024 |
Shou-Ying Cao1, Cheng-He Zhou.
Abstract
In the crystal structure of the title compound C(15)H(27)N(3)O(4), the mol-ecule is located on a twofold axis and the asymmetric unit contains one half-mol-ecule, with one N and one C atom lying on the rotation axis. The pyridine ring is the hydrogen-bond acceptor, while two hydroxyl O atoms act as hydrogen-bond donors in intra-molecular O-H⋯N and intermolecular O-H⋯N and O-H⋯O hydrogen bonds, thereby forming a closed hydrogen-bonded cage.Entities:
Year: 2011 PMID: 21754024 PMCID: PMC3099931 DOI: 10.1107/S1600536811010919
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H27N3O4 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2 2ab | Cell parameters from 2637 reflections |
| θ = 2.5–27.1° | |
| µ = 0.09 mm−1 | |
| Block, colourless | |
| 0.45 × 0.45 × 0.45 mm |
| Bruker SMART APEX diffractometer | 1441 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.5°, θmin = 2.5° |
| φ– and ω–scans | |
| 4239 measured reflections | |
| 1511 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1511 reflections | Δρmax = 0.14 e Å−3 |
| 104 parameters | Δρmin = −0.16 e Å−3 |
| 1 restraint | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.105 (9) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.0000 | 1.0000 | 0.8502 (3) | 0.0603 (7) | |
| H1 | 0.0000 | 1.0000 | 0.9624 | 0.072* | |
| C2 | 0.0769 (2) | 0.91187 (18) | 0.7667 (2) | 0.0537 (5) | |
| H2 | 0.1312 | 0.8520 | 0.8215 | 0.064* | |
| C3 | 0.07333 (19) | 0.91260 (16) | 0.6004 (2) | 0.0453 (4) | |
| C4 | 0.1444 (2) | 0.81022 (17) | 0.5072 (2) | 0.0564 (5) | |
| H4A | 0.2346 | 0.7873 | 0.5610 | 0.068* | |
| H4B | 0.0806 | 0.7379 | 0.5090 | 0.068* | |
| C5 | 0.29756 (19) | 0.93047 (18) | 0.3315 (3) | 0.0590 (5) | |
| H5A | 0.3889 | 0.8861 | 0.3158 | 0.071* | |
| H5B | 0.3040 | 0.9755 | 0.4328 | 0.071* | |
| C6 | 0.2762 (2) | 1.02106 (18) | 0.1970 (2) | 0.0567 (5) | |
| H6A | 0.3634 | 1.0719 | 0.1855 | 0.068* | |
| H6B | 0.2618 | 0.9757 | 0.0970 | 0.068* | |
| C7 | 0.2098 (2) | 0.72780 (17) | 0.2461 (3) | 0.0617 (5) | |
| H7A | 0.2738 | 0.6747 | 0.3093 | 0.074* | |
| H7B | 0.2628 | 0.7520 | 0.1497 | 0.074* | |
| C8 | 0.0801 (3) | 0.65392 (18) | 0.1972 (3) | 0.0671 (5) | |
| H8A | 0.1129 | 0.5729 | 0.1595 | 0.081* | |
| H8B | 0.0193 | 0.6403 | 0.2914 | 0.081* | |
| N1 | 0.0000 | 1.0000 | 0.5180 (2) | 0.0460 (5) | |
| N2 | 0.17740 (14) | 0.84064 (12) | 0.34005 (17) | 0.0443 (4) | |
| O1 | 0.15472 (15) | 1.09903 (12) | 0.22517 (18) | 0.0608 (4) | |
| H1A | 0.0944 | 1.0617 | 0.2802 | 0.091* | |
| O2 | −0.0051 (2) | 0.70862 (16) | 0.0769 (2) | 0.0867 (5) | |
| H2A | −0.0531 | 0.7659 | 0.1157 | 0.130* |
| C1 | 0.0685 (17) | 0.0814 (19) | 0.0309 (11) | −0.0226 (16) | 0.000 | 0.000 |
| C2 | 0.0567 (10) | 0.0636 (11) | 0.0408 (9) | −0.0147 (9) | −0.0090 (8) | 0.0123 (8) |
| C3 | 0.0449 (9) | 0.0501 (9) | 0.0410 (8) | −0.0046 (8) | −0.0020 (7) | 0.0090 (7) |
| C4 | 0.0620 (11) | 0.0540 (10) | 0.0533 (11) | 0.0119 (9) | −0.0016 (9) | 0.0147 (8) |
| C5 | 0.0383 (9) | 0.0654 (11) | 0.0734 (12) | 0.0017 (8) | −0.0028 (9) | 0.0111 (10) |
| C6 | 0.0450 (9) | 0.0621 (11) | 0.0631 (11) | −0.0064 (8) | 0.0069 (9) | 0.0084 (10) |
| C7 | 0.0612 (11) | 0.0542 (10) | 0.0696 (12) | 0.0205 (10) | 0.0148 (10) | 0.0044 (9) |
| C8 | 0.0867 (14) | 0.0460 (10) | 0.0687 (12) | 0.0053 (10) | 0.0155 (10) | −0.0064 (9) |
| N1 | 0.0536 (11) | 0.0513 (11) | 0.0333 (9) | 0.0073 (10) | 0.000 | 0.000 |
| N2 | 0.0406 (7) | 0.0433 (7) | 0.0491 (8) | 0.0064 (6) | 0.0038 (6) | 0.0053 (6) |
| O1 | 0.0550 (8) | 0.0577 (7) | 0.0697 (9) | 0.0026 (6) | 0.0056 (6) | 0.0142 (7) |
| O2 | 0.0996 (12) | 0.0797 (11) | 0.0807 (10) | 0.0185 (9) | −0.0140 (10) | −0.0251 (8) |
| C1—C2i | 1.366 (2) | C6—O1 | 1.410 (2) |
| C1—C2 | 1.366 (2) | C6—H6A | 0.9700 |
| C1—H1 | 0.9300 | C6—H6B | 0.9700 |
| C2—C3 | 1.380 (3) | C7—N2 | 1.469 (2) |
| C2—H2 | 0.9300 | C7—C8 | 1.482 (3) |
| C3—N1 | 1.339 (2) | C7—H7A | 0.9700 |
| C3—C4 | 1.491 (3) | C7—H7B | 0.9700 |
| C4—N2 | 1.455 (2) | C8—O2 | 1.395 (3) |
| C4—H4A | 0.9700 | C8—H8A | 0.9700 |
| C4—H4B | 0.9700 | C8—H8B | 0.9700 |
| C5—N2 | 1.463 (2) | N1—C3i | 1.339 (2) |
| C5—C6 | 1.491 (3) | O1—H1A | 0.8200 |
| C5—H5A | 0.9700 | O2—H2A | 0.8200 |
| C5—H5B | 0.9700 | ||
| C2i—C1—C2 | 119.1 (2) | C5—C6—H6A | 109.3 |
| C2i—C1—H1 | 120.5 | O1—C6—H6B | 109.3 |
| C2—C1—H1 | 120.5 | C5—C6—H6B | 109.3 |
| C1—C2—C3 | 119.4 (2) | H6A—C6—H6B | 108.0 |
| C1—C2—H2 | 120.3 | N2—C7—C8 | 115.04 (16) |
| C3—C2—H2 | 120.3 | N2—C7—H7A | 108.5 |
| N1—C3—C2 | 121.73 (18) | C8—C7—H7A | 108.5 |
| N1—C3—C4 | 117.91 (15) | N2—C7—H7B | 108.5 |
| C2—C3—C4 | 120.25 (18) | C8—C7—H7B | 108.5 |
| N2—C4—C3 | 114.79 (14) | H7A—C7—H7B | 107.5 |
| N2—C4—H4A | 108.6 | O2—C8—C7 | 114.72 (18) |
| C3—C4—H4A | 108.6 | O2—C8—H8A | 108.6 |
| N2—C4—H4B | 108.6 | C7—C8—H8A | 108.6 |
| C3—C4—H4B | 108.6 | O2—C8—H8B | 108.6 |
| H4A—C4—H4B | 107.5 | C7—C8—H8B | 108.6 |
| N2—C5—C6 | 111.48 (16) | H8A—C8—H8B | 107.6 |
| N2—C5—H5A | 109.3 | C3i—N1—C3 | 118.6 (2) |
| C6—C5—H5A | 109.3 | C4—N2—C5 | 110.45 (16) |
| N2—C5—H5B | 109.3 | C4—N2—C7 | 111.27 (14) |
| C6—C5—H5B | 109.3 | C5—N2—C7 | 111.38 (15) |
| H5A—C5—H5B | 108.0 | C6—O1—H1A | 109.5 |
| O1—C6—C5 | 111.42 (17) | C8—O2—H2A | 109.5 |
| O1—C6—H6A | 109.3 | ||
| C2i—C1—C2—C3 | −1.04 (13) | C4—C3—N1—C3i | 175.19 (18) |
| C1—C2—C3—N1 | 2.2 (3) | C3—C4—N2—C5 | 70.9 (2) |
| C1—C2—C3—C4 | −174.02 (14) | C3—C4—N2—C7 | −164.87 (16) |
| N1—C3—C4—N2 | 23.7 (2) | C6—C5—N2—C4 | −143.71 (17) |
| C2—C3—C4—N2 | −160.01 (17) | C6—C5—N2—C7 | 92.11 (19) |
| N2—C5—C6—O1 | 66.6 (2) | C8—C7—N2—C4 | 77.8 (2) |
| N2—C7—C8—O2 | 71.9 (2) | C8—C7—N2—C5 | −158.52 (17) |
| C2—C3—N1—C3i | −1.09 (13) |
| H··· | ||||
| O2—H2A···O1i | 0.82 | 1.94 | 2.762 (2) | 175 |
| O1—H1A···N2i | 0.82 | 2.74 | 3.248 (2) | 122 |
| O1—H1A···N2 | 0.82 | 2.54 | 2.935 (2) | 111 |
| O1—H1A···N1 | 0.82 | 2.25 | 3.004 (2) | 153 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2 | 0.82 | 1.94 | 2.762 (2) | 175 |
| O1—H1 | 0.82 | 2.74 | 3.248 (2) | 122 |
| O1—H1 | 0.82 | 2.54 | 2.935 (2) | 111 |
| O1—H1 | 0.82 | 2.25 | 3.004 (2) | 153 |
Symmetry code: (i) .