| Literature DB >> 21754004 |
Li Ma1, Yu-Hua Huang, Jian-Feng Xu, Hong Deng.
Abstract
The reaction of 1H-benzimidazole-5-carb-oxy-lic acid with silver nitrate in the presence of perchloric acid under hydro-thermal conditions yielded the title complex, [Ag(C(8)H(6)N(2)O(2))(2)]ClO(4), which comprises of an [Ag(C(8)H(6)N(2)O(2))(2)] mononuclear cation and a perchlorate anion. The Ag(I) ion is coordinated by two N atoms from two different neutral 1H-benzimidazole-5-carb-oxy-lic acid ligands with an N-Ag-N bond angle of 163.21 (14)°, forming an [Ag(C(8)H(6)N(2)O(2))(2)] mononuclear cation. Although both ligands in the mononuclear cation are monodentate with one N atom coordinated to the metal ion, they are different: one is N(3) coordinated to the Ag (I) ion and the N(1) atom protonated, the other with the N(1) coordinated to the Ag (I) ion and the N(3) atom protonated (and thus formally a 1H-benzimidazole-6-carb-oxy-lic acid rather than a 1H-benzimidazole-5-carb-oxy-lic acid ligand). The planes of the two planar ligands are roughly perpendicular, making a dihedral angle of 84.97 (2)°. The packing of the ions is stablized by extensive O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, and by remote Ag⋯O inter-actions [3.002 (3), 3.581 (5) and 3.674 (5) Å].Entities:
Year: 2011 PMID: 21754004 PMCID: PMC3099977 DOI: 10.1107/S1600536811010427
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ag(C8H6N2O2)2]ClO4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3317 reflections | |
| θ = 1.6–25.2° | |
| µ = 1.29 mm−1 | |
| α = 78.566 (5)° | |
| β = 89.111 (5)° | Prism, yellow |
| γ = 82.554 (5)° | 0.26 × 0.24 × 0.22 mm |
| Bruker SMART APEX CCD diffractometer | 3247 independent reflections |
| Radiation source: fine-focus sealed tube | 2630 reflections with |
| graphite | |
| ω scans | θmax = 25.2°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 4604 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3247 reflections | (Δ/σ)max = 0.001 |
| 273 parameters | Δρmax = 0.62 e Å−3 |
| 0 restraints | Δρmin = −0.70 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ag1 | 0.44123 (8) | 0.70811 (3) | 0.15898 (2) | 0.04721 (15) | |
| C1 | 0.6189 (10) | 0.4842 (4) | 0.1256 (3) | 0.0466 (11) | |
| H1 | 0.7430 | 0.5057 | 0.0793 | 0.056* | |
| C2 | 0.3124 (8) | 0.4843 (3) | 0.2325 (3) | 0.0346 (9) | |
| C3 | 0.3830 (9) | 0.3825 (3) | 0.2238 (3) | 0.0408 (10) | |
| C4 | 0.2654 (10) | 0.3021 (4) | 0.2792 (3) | 0.0509 (12) | |
| H4 | 0.3152 | 0.2338 | 0.2738 | 0.061* | |
| C5 | 0.0729 (10) | 0.3286 (3) | 0.3421 (3) | 0.0471 (11) | |
| H5 | −0.0092 | 0.2766 | 0.3804 | 0.057* | |
| C6 | −0.0052 (9) | 0.4309 (3) | 0.3509 (3) | 0.0396 (10) | |
| C7 | 0.1163 (9) | 0.5103 (3) | 0.2959 (3) | 0.0391 (10) | |
| H7 | 0.0675 | 0.5786 | 0.3016 | 0.047* | |
| C8 | −0.2186 (10) | 0.4595 (3) | 0.4175 (3) | 0.0446 (11) | |
| C9 | 0.4393 (10) | 0.9464 (4) | 0.1285 (3) | 0.0456 (11) | |
| H9 | 0.3170 | 0.9604 | 0.0780 | 0.055* | |
| C10 | 0.6828 (9) | 0.8675 (3) | 0.2492 (3) | 0.0371 (10) | |
| C11 | 0.7374 (9) | 0.9692 (3) | 0.2309 (3) | 0.0381 (10) | |
| C12 | 0.9185 (9) | 1.0038 (3) | 0.2866 (3) | 0.0421 (10) | |
| H12 | 0.9543 | 1.0719 | 0.2747 | 0.050* | |
| C13 | 1.0426 (9) | 0.9313 (3) | 0.3608 (3) | 0.0390 (10) | |
| C14 | 0.9860 (10) | 0.8291 (4) | 0.3798 (3) | 0.0482 (11) | |
| H14 | 1.0709 | 0.7827 | 0.4308 | 0.058* | |
| C15 | 0.8066 (10) | 0.7964 (3) | 0.3241 (3) | 0.0460 (11) | |
| H15 | 0.7694 | 0.7284 | 0.3364 | 0.055* | |
| C16 | 1.2386 (10) | 0.9636 (4) | 0.4219 (3) | 0.0457 (11) | |
| Cl1 | 0.9204 (2) | 0.77011 (9) | 0.97296 (8) | 0.0448 (3) | |
| N1 | 0.4642 (7) | 0.5474 (3) | 0.1693 (2) | 0.0408 (9) | |
| N2 | 0.5791 (8) | 0.3854 (3) | 0.1548 (3) | 0.0493 (10) | |
| H2 | 0.6610 | 0.3333 | 0.1343 | 0.059* | |
| N3 | 0.4956 (8) | 0.8550 (3) | 0.1829 (2) | 0.0415 (9) | |
| N4 | 0.5779 (8) | 1.0176 (3) | 0.1536 (3) | 0.0470 (9) | |
| H4A | 0.5686 | 1.0815 | 0.1264 | 0.056* | |
| O1 | −0.3280 (8) | 0.3835 (2) | 0.4671 (3) | 0.0581 (9) | |
| H1A | −0.4557 | 0.4062 | 0.4972 | 0.087* | |
| O2 | −0.2846 (7) | 0.5503 (2) | 0.4241 (2) | 0.0608 (10) | |
| O3 | 1.3333 (8) | 0.8956 (3) | 0.4925 (3) | 0.0672 (10) | |
| H3 | 1.4522 | 0.9178 | 0.5187 | 0.101* | |
| O4 | 1.3026 (8) | 1.0534 (3) | 0.4028 (2) | 0.0630 (10) | |
| O5 | 1.0476 (7) | 0.7959 (3) | 0.8839 (2) | 0.0603 (9) | |
| O6 | 0.6290 (6) | 0.7811 (3) | 0.9620 (2) | 0.0577 (9) | |
| O7 | 1.0171 (10) | 0.6657 (4) | 1.0117 (4) | 0.1079 (18) | |
| O8 | 0.9910 (9) | 0.8361 (5) | 1.0309 (4) | 0.117 (2) |
| Ag1 | 0.0531 (3) | 0.0393 (2) | 0.0526 (2) | −0.01424 (16) | 0.00379 (16) | −0.01219 (16) |
| C1 | 0.042 (3) | 0.052 (3) | 0.049 (3) | −0.009 (2) | 0.008 (2) | −0.013 (2) |
| C2 | 0.031 (2) | 0.035 (2) | 0.038 (2) | −0.0045 (17) | −0.0032 (17) | −0.0080 (18) |
| C3 | 0.043 (3) | 0.039 (2) | 0.043 (2) | −0.005 (2) | 0.0001 (19) | −0.014 (2) |
| C4 | 0.060 (3) | 0.033 (2) | 0.060 (3) | −0.004 (2) | 0.006 (2) | −0.013 (2) |
| C5 | 0.056 (3) | 0.035 (2) | 0.050 (3) | −0.013 (2) | 0.006 (2) | −0.005 (2) |
| C6 | 0.039 (3) | 0.038 (2) | 0.040 (2) | −0.0033 (19) | −0.0002 (19) | −0.0044 (19) |
| C7 | 0.041 (3) | 0.031 (2) | 0.046 (2) | −0.0022 (19) | 0.0006 (19) | −0.0109 (19) |
| C8 | 0.047 (3) | 0.038 (3) | 0.047 (3) | −0.008 (2) | 0.005 (2) | −0.002 (2) |
| C9 | 0.048 (3) | 0.048 (3) | 0.042 (2) | −0.006 (2) | −0.003 (2) | −0.013 (2) |
| C10 | 0.038 (3) | 0.037 (2) | 0.037 (2) | −0.0034 (19) | 0.0048 (18) | −0.0102 (18) |
| C11 | 0.041 (3) | 0.035 (2) | 0.038 (2) | −0.0028 (19) | −0.0024 (19) | −0.0081 (18) |
| C12 | 0.047 (3) | 0.034 (2) | 0.045 (3) | −0.005 (2) | −0.003 (2) | −0.007 (2) |
| C13 | 0.035 (2) | 0.041 (2) | 0.040 (2) | −0.0063 (19) | 0.0032 (18) | −0.0078 (19) |
| C14 | 0.057 (3) | 0.043 (3) | 0.040 (3) | −0.001 (2) | −0.004 (2) | −0.001 (2) |
| C15 | 0.057 (3) | 0.032 (2) | 0.049 (3) | −0.008 (2) | −0.001 (2) | −0.006 (2) |
| C16 | 0.048 (3) | 0.051 (3) | 0.038 (2) | −0.002 (2) | 0.000 (2) | −0.010 (2) |
| Cl1 | 0.0334 (6) | 0.0542 (7) | 0.0455 (6) | −0.0021 (5) | −0.0026 (5) | −0.0084 (5) |
| N1 | 0.041 (2) | 0.038 (2) | 0.044 (2) | −0.0047 (17) | 0.0058 (16) | −0.0087 (17) |
| N2 | 0.055 (3) | 0.040 (2) | 0.056 (2) | −0.0027 (18) | 0.0131 (19) | −0.0196 (18) |
| N3 | 0.046 (2) | 0.037 (2) | 0.043 (2) | −0.0096 (17) | 0.0016 (16) | −0.0109 (17) |
| N4 | 0.058 (3) | 0.033 (2) | 0.047 (2) | −0.0052 (18) | −0.0090 (18) | −0.0014 (17) |
| O1 | 0.059 (2) | 0.0433 (19) | 0.068 (2) | −0.0067 (16) | 0.0241 (17) | −0.0017 (16) |
| O2 | 0.071 (3) | 0.0371 (19) | 0.071 (2) | −0.0037 (17) | 0.0301 (19) | −0.0084 (16) |
| O3 | 0.079 (3) | 0.066 (2) | 0.054 (2) | −0.016 (2) | −0.0255 (19) | −0.0008 (19) |
| O4 | 0.072 (3) | 0.054 (2) | 0.064 (2) | −0.0176 (19) | −0.0196 (18) | −0.0074 (18) |
| O5 | 0.060 (2) | 0.067 (2) | 0.052 (2) | −0.0115 (19) | 0.0080 (16) | −0.0069 (17) |
| O6 | 0.0317 (18) | 0.064 (2) | 0.075 (2) | −0.0046 (16) | −0.0046 (15) | −0.0080 (18) |
| O7 | 0.077 (3) | 0.087 (3) | 0.125 (4) | 0.011 (3) | 0.004 (3) | 0.051 (3) |
| O8 | 0.060 (3) | 0.199 (6) | 0.128 (4) | −0.023 (3) | 0.010 (3) | −0.120 (4) |
| Ag1—N1 | 2.106 (4) | C10—C15 | 1.383 (6) |
| Ag1—N3 | 2.106 (4) | C10—C11 | 1.390 (6) |
| C1—N1 | 1.313 (6) | C10—N3 | 1.391 (5) |
| C1—N2 | 1.340 (6) | C11—N4 | 1.379 (5) |
| C1—H1 | 0.9300 | C11—C12 | 1.393 (6) |
| C2—C7 | 1.383 (6) | C12—C13 | 1.386 (6) |
| C2—C3 | 1.387 (6) | C12—H12 | 0.9300 |
| C2—N1 | 1.394 (5) | C13—C14 | 1.399 (6) |
| C3—N2 | 1.379 (6) | C13—C16 | 1.480 (6) |
| C3—C4 | 1.392 (6) | C14—C15 | 1.373 (6) |
| C4—C5 | 1.368 (7) | C14—H14 | 0.9300 |
| C4—H4 | 0.9300 | C15—H15 | 0.9300 |
| C5—C6 | 1.399 (6) | C16—O4 | 1.255 (6) |
| C5—H5 | 0.9300 | C16—O3 | 1.275 (5) |
| C6—C7 | 1.390 (6) | Cl1—O8 | 1.408 (4) |
| C6—C8 | 1.482 (6) | Cl1—O7 | 1.416 (4) |
| C7—H7 | 0.9300 | Cl1—O5 | 1.426 (4) |
| C8—O2 | 1.234 (5) | Cl1—O6 | 1.434 (3) |
| C8—O1 | 1.294 (5) | N2—H2 | 0.8600 |
| C9—N3 | 1.312 (6) | N4—H4A | 0.8600 |
| C9—N4 | 1.348 (6) | O1—H1A | 0.8200 |
| C9—H9 | 0.9300 | O3—H3 | 0.8200 |
| N1—Ag1—N3 | 163.21 (14) | C13—C12—H12 | 121.7 |
| N1—C1—N2 | 112.9 (4) | C11—C12—H12 | 121.7 |
| N1—C1—H1 | 123.6 | C12—C13—C14 | 121.9 (4) |
| N2—C1—H1 | 123.6 | C12—C13—C16 | 118.8 (4) |
| C7—C2—C3 | 121.0 (4) | C14—C13—C16 | 119.3 (4) |
| C7—C2—N1 | 129.7 (4) | C15—C14—C13 | 120.8 (4) |
| C3—C2—N1 | 109.3 (4) | C15—C14—H14 | 119.6 |
| N2—C3—C2 | 105.3 (4) | C13—C14—H14 | 119.6 |
| N2—C3—C4 | 132.8 (4) | C14—C15—C10 | 118.1 (4) |
| C2—C3—C4 | 122.0 (4) | C14—C15—H15 | 121.0 |
| C5—C4—C3 | 116.6 (4) | C10—C15—H15 | 121.0 |
| C5—C4—H4 | 121.7 | O4—C16—O3 | 123.8 (4) |
| C3—C4—H4 | 121.7 | O4—C16—C13 | 120.1 (4) |
| C4—C5—C6 | 122.4 (4) | O3—C16—C13 | 116.1 (4) |
| C4—C5—H5 | 118.8 | O8—Cl1—O7 | 111.1 (4) |
| C6—C5—H5 | 118.8 | O8—Cl1—O5 | 108.7 (3) |
| C7—C6—C5 | 120.4 (4) | O7—Cl1—O5 | 107.5 (3) |
| C7—C6—C8 | 117.4 (4) | O8—Cl1—O6 | 109.9 (2) |
| C5—C6—C8 | 122.3 (4) | O7—Cl1—O6 | 109.1 (3) |
| C2—C7—C6 | 117.7 (4) | O5—Cl1—O6 | 110.6 (2) |
| C2—C7—H7 | 121.2 | C1—N1—C2 | 105.0 (4) |
| C6—C7—H7 | 121.2 | C1—N1—Ag1 | 131.1 (3) |
| O2—C8—O1 | 123.2 (4) | C2—N1—Ag1 | 123.9 (3) |
| O2—C8—C6 | 121.2 (4) | C1—N2—C3 | 107.5 (4) |
| O1—C8—C6 | 115.6 (4) | C1—N2—H2 | 126.2 |
| N3—C9—N4 | 112.7 (4) | C3—N2—H2 | 126.2 |
| N3—C9—H9 | 123.7 | C9—N3—C10 | 105.3 (4) |
| N4—C9—H9 | 123.7 | C9—N3—Ag1 | 130.1 (3) |
| C15—C10—C11 | 121.0 (4) | C10—N3—Ag1 | 121.7 (3) |
| C15—C10—N3 | 129.7 (4) | C9—N4—C11 | 107.4 (4) |
| C11—C10—N3 | 109.2 (4) | C9—N4—H4A | 126.3 |
| N4—C11—C10 | 105.4 (4) | C11—N4—H4A | 126.3 |
| N4—C11—C12 | 133.0 (4) | C8—O1—H1A | 109.5 |
| C10—C11—C12 | 121.7 (4) | C16—O3—H3 | 109.5 |
| C13—C12—C11 | 116.5 (4) |
| H··· | ||||
| O1—H1A···O2i | 0.82 | 1.82 | 2.634 (5) | 173 |
| N2—H2···O5ii | 0.86 | 2.15 | 2.983 (6) | 163 |
| O3—H3···O4iii | 0.82 | 1.80 | 2.608 (6) | 168 |
| N4—H4A···O6iv | 0.86 | 2.14 | 2.935 (6) | 153 |
| C14—H14···O3 | 0.93 | 2.41 | 2.729 (6) | 100 |
| C14—H14···O1v | 0.93 | 2.60 | 3.491 (6) | 162 |
| C15—H15···O2vi | 0.93 | 2.51 | 3.398 (5) | 161 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.82 | 1.82 | 2.634 (5) | 173 |
| N2—H2⋯O5ii | 0.86 | 2.15 | 2.983 (6) | 163 |
| O3—H3⋯O4iii | 0.82 | 1.80 | 2.608 (6) | 168 |
| N4—H4 | 0.86 | 2.14 | 2.935 (6) | 153 |
| C14—H14⋯O1v | 0.93 | 2.60 | 3.491 (6) | 162 |
| C15—H15⋯O2vi | 0.93 | 2.51 | 3.398 (5) | 161 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .