Literature DB >> 21753983

cis-Bis(2,2'-bipyridine-κN,N')dichloridocobalt(II) trihydrate.

K Arun Kumar1, M Amuthaselvi, A Dayalan.   

Abstract

In the title complex, [CoCl(2)(C(10)H(8)N(2))(2)]·3H(2)O, the Co(II) ion is situated on a twofold rotation axis and exhibits a slightly distorted octa-hedral geometry and is chelated by four N atoms of the two bidentate 2,2'-bipyridine ligands and two Cl(-) ions. The crystal packing is stabilized by hydrogen bonding formed between chloride ions and adjacent water mol-ecules. One of the two independent water molecules in the asymmetric unit is disordered over two sets of sites, each on a twofold rotation axis, in a 0.734 (17):0.269 (17) ratio.

Entities:  

Year:  2011        PMID: 21753983      PMCID: PMC3099996          DOI: 10.1107/S1600536811009251

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­bacterial activity of similar complexes, see: Senthilkumar & Arunachalam (2008 ▶). For similar complexes applied in the immunoassay of carcinoma anti­gen-125, see: Shihong et al. (2009 ▶). For the application of similar complexes as biosensors, see: Ying et al. (2006 ▶).

Experimental

Crystal data

[CoCl2(C10H8N2)2]·3H2O M = 496.25 Monoclinic, a = 18.3644 (8) Å b = 13.1902 (8) Å c = 10.8854 (6) Å β = 120.030 (4)° V = 2282.8 (2) Å3 Z = 4 Mo Kα radiation μ = 1.01 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.721, T max = 0.823 18022 measured reflections 2123 independent reflections 1731 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.143 S = 1.19 2123 reflections 152 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.67 e Å−3 Δρmin = −0.65 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Bruno et al., 2002 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811009251/bq2282sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009251/bq2282Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C10H8N2)2]·3H2OF(000) = 1020
Mr = 496.25Dx = 1.444 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C2ycCell parameters from 6958 reflections
a = 18.3644 (8) Åθ = 2.4–25.4°
b = 13.1902 (8) ŵ = 1.01 mm1
c = 10.8854 (6) ÅT = 293 K
β = 120.030 (4)°Block, red
V = 2282.8 (2) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2123 independent reflections
Radiation source: fine-focus sealed tube1731 reflections with I > 2σ(I)
graphiteRint = 0.051
ω and φ scansθmax = 25.6°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −22→19
Tmin = 0.721, Tmax = 0.823k = −15→15
18022 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.143w = 1/[σ2(Fo2) + (0.0754P)2 + 3.251P] where P = (Fo2 + 2Fc2)/3
S = 1.19(Δ/σ)max < 0.001
2123 reflectionsΔρmax = 0.67 e Å3
152 parametersΔρmin = −0.64 e Å3
4 restraintsExtinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0015 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.9376 (3)0.3673 (3)0.5122 (5)0.0632 (11)
H10.98580.35060.50890.076*
C20.8848 (3)0.4410 (4)0.4210 (6)0.0774 (14)
H20.89730.47400.35830.093*
C30.8134 (3)0.4643 (4)0.4254 (6)0.0772 (14)
H30.77680.51400.36580.093*
C40.7964 (3)0.4142 (3)0.5176 (5)0.0610 (11)
H40.74760.42880.52020.073*
C50.8517 (2)0.3418 (2)0.6070 (4)0.0428 (8)
C60.8377 (2)0.2843 (2)0.7097 (3)0.0394 (8)
C70.7668 (2)0.2959 (3)0.7214 (4)0.0518 (9)
H70.72470.34080.66230.062*
C80.7588 (2)0.2405 (4)0.8212 (5)0.0599 (10)
H80.71200.24860.83190.072*
C90.8211 (2)0.1730 (3)0.9046 (4)0.0576 (10)
H90.81710.13440.97250.069*
C100.8893 (2)0.1635 (3)0.8859 (4)0.0472 (8)
H100.93100.11720.94190.057*
N10.92249 (18)0.3194 (2)0.6043 (3)0.0449 (7)
N20.89867 (17)0.2174 (2)0.7915 (3)0.0392 (6)
O10.8926 (3)−0.0960 (3)0.7511 (4)0.0902 (12)
Cl10.92474 (5)0.07552 (7)0.56901 (9)0.0448 (3)
Co11.00000.20323 (5)0.75000.0367 (3)
O21.0000−0.2593 (12)0.75000.169 (6)0.734 (17)
O31.0000−0.42270.75000.174 (19)0.269 (17)
H1A0.911 (4)−0.046 (3)0.724 (5)0.11 (2)*
H1B0.904 (4)−0.085 (4)0.836 (3)0.11 (2)*
U11U22U33U12U13U23
C10.043 (2)0.068 (3)0.071 (3)−0.0005 (18)0.023 (2)0.021 (2)
C20.061 (3)0.076 (3)0.083 (3)0.003 (2)0.027 (2)0.042 (3)
C30.057 (3)0.062 (3)0.088 (3)0.011 (2)0.018 (2)0.036 (2)
C40.046 (2)0.050 (2)0.070 (3)0.0110 (17)0.016 (2)0.0131 (19)
C50.0330 (17)0.0354 (17)0.0441 (18)−0.0011 (13)0.0074 (14)−0.0034 (14)
C60.0301 (17)0.0368 (17)0.0399 (17)0.0027 (12)0.0089 (14)−0.0068 (14)
C70.0332 (19)0.059 (2)0.051 (2)0.0130 (15)0.0122 (16)−0.0016 (17)
C80.045 (2)0.077 (3)0.064 (2)0.014 (2)0.032 (2)0.001 (2)
C90.049 (2)0.074 (3)0.053 (2)0.0112 (19)0.0282 (19)0.007 (2)
C100.0359 (18)0.055 (2)0.0461 (19)0.0082 (16)0.0174 (15)0.0074 (17)
N10.0331 (15)0.0416 (16)0.0487 (16)−0.0004 (12)0.0120 (13)0.0027 (13)
N20.0265 (14)0.0427 (16)0.0394 (14)0.0044 (11)0.0098 (11)0.0005 (12)
O10.101 (3)0.110 (3)0.064 (2)−0.057 (2)0.044 (2)−0.018 (2)
Cl10.0335 (5)0.0513 (6)0.0415 (5)−0.0071 (3)0.0128 (4)−0.0062 (3)
Co10.0238 (4)0.0402 (4)0.0382 (4)0.0000.0097 (3)0.000
O20.133 (10)0.217 (14)0.117 (8)0.0000.032 (7)0.000
O30.20 (3)0.28 (5)0.11 (2)0.0000.12 (2)0.000
C1—N11.327 (5)C8—C91.373 (6)
C1—C21.381 (6)C8—H80.9300
C1—H10.9300C9—C101.373 (5)
C2—C31.370 (7)C9—H90.9300
C2—H20.9300C10—N21.329 (5)
C3—C41.362 (6)C10—H100.9300
C3—H30.9300N1—Co12.151 (3)
C4—C51.379 (5)N2—Co12.132 (3)
C4—H40.9300O1—H1A0.86 (6)
C5—N11.348 (4)O1—H1B0.85 (3)
C5—C61.476 (5)Cl1—Co12.4298 (9)
C6—N21.351 (4)Co1—N2i2.132 (3)
C6—C71.378 (5)Co1—N1i2.151 (3)
C7—C81.377 (6)Co1—Cl1i2.4298 (9)
C7—H70.9300
N1—C1—C2122.8 (4)C8—C9—H9120.6
N1—C1—H1118.6N2—C10—C9123.1 (3)
C2—C1—H1118.6N2—C10—H10118.4
C3—C2—C1118.2 (4)C9—C10—H10118.4
C3—C2—H2120.9C1—N1—C5118.7 (3)
C1—C2—H2120.9C1—N1—Co1125.8 (3)
C4—C3—C2119.5 (4)C5—N1—Co1115.4 (2)
C4—C3—H3120.2C10—N2—C6118.2 (3)
C2—C3—H3120.2C10—N2—Co1125.5 (2)
C3—C4—C5119.8 (4)C6—N2—Co1116.2 (2)
C3—C4—H4120.1H1A—O1—H1B109 (5)
C5—C4—H4120.1N2—Co1—N2i169.92 (15)
N1—C5—C4120.9 (4)N2—Co1—N1i96.14 (11)
N1—C5—C6116.1 (3)N2i—Co1—N1i76.58 (11)
C4—C5—C6123.0 (3)N2—Co1—N176.58 (11)
N2—C6—C7121.4 (3)N2i—Co1—N196.14 (11)
N2—C6—C5115.7 (3)N1i—Co1—N189.19 (16)
C7—C6—C5122.9 (3)N2—Co1—Cl191.72 (8)
C8—C7—C6119.5 (3)N2i—Co1—Cl195.26 (8)
C8—C7—H7120.2N1i—Co1—Cl1171.64 (8)
C6—C7—H7120.2N1—Co1—Cl189.88 (8)
C9—C8—C7118.9 (3)N2—Co1—Cl1i95.26 (8)
C9—C8—H8120.6N2i—Co1—Cl1i91.72 (8)
C7—C8—H8120.6N1i—Co1—Cl1i89.88 (8)
C10—C9—C8118.8 (4)N1—Co1—Cl1i171.64 (8)
C10—C9—H9120.6Cl1—Co1—Cl1i92.22 (5)
N1—C1—C2—C3−0.8 (8)C7—C6—N2—C10−0.9 (5)
C1—C2—C3—C4−0.5 (8)C5—C6—N2—C10180.0 (3)
C2—C3—C4—C51.0 (8)C7—C6—N2—Co1176.4 (3)
C3—C4—C5—N1−0.3 (6)C5—C6—N2—Co1−2.7 (4)
C3—C4—C5—C6−180.0 (4)C10—N2—Co1—N2i−136.3 (3)
N1—C5—C6—N21.5 (4)C6—N2—Co1—N2i46.6 (2)
C4—C5—C6—N2−178.8 (3)C10—N2—Co1—N1i−93.0 (3)
N1—C5—C6—C7−177.5 (3)C6—N2—Co1—N1i89.9 (2)
C4—C5—C6—C72.2 (5)C10—N2—Co1—N1179.3 (3)
N2—C6—C7—C81.9 (5)C6—N2—Co1—N12.2 (2)
C5—C6—C7—C8−179.1 (3)C10—N2—Co1—Cl189.8 (3)
C6—C7—C8—C9−1.5 (6)C6—N2—Co1—Cl1−87.3 (2)
C7—C8—C9—C100.3 (7)C10—N2—Co1—Cl1i−2.6 (3)
C8—C9—C10—N20.7 (6)C6—N2—Co1—Cl1i−179.7 (2)
C2—C1—N1—C51.5 (6)C1—N1—Co1—N2−179.5 (3)
C2—C1—N1—Co1179.7 (4)C5—N1—Co1—N2−1.3 (2)
C4—C5—N1—C1−1.0 (5)C1—N1—Co1—N2i7.5 (3)
C6—C5—N1—C1178.7 (3)C5—N1—Co1—N2i−174.3 (2)
C4—C5—N1—Co1−179.3 (3)C1—N1—Co1—N1i83.9 (3)
C6—C5—N1—Co10.4 (4)C5—N1—Co1—N1i−97.9 (3)
C9—C10—N2—C6−0.4 (5)C1—N1—Co1—Cl1−87.7 (3)
C9—C10—N2—Co1−177.4 (3)C5—N1—Co1—Cl190.5 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1A···Cl10.86 (6)2.43 (5)3.250 (4)160 (5)
O1—H1B···Cl1ii0.85 (3)2.37 (4)3.218 (4)172 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯Cl10.86 (6)2.43 (5)3.250 (4)160 (5)
O1—H1B⋯Cl1i0.85 (3)2.37 (4)3.218 (4)172 (4)

Symmetry code: (i) .

  5 in total

1.  New software for searching the Cambridge Structural Database and visualizing crystal structures.

Authors:  Ian J Bruno; Jason C Cole; Paul R Edgington; Magnus Kessler; Clare F Macrae; Patrick McCabe; Jonathan Pearson; Robin Taylor
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, micellar properties, DNA binding and antimicrobial studies of some surfactant-cobalt(III) complexes.

Authors:  R Senthil Kumar; S Arunachalam
Journal:  Biophys Chem       Date:  2008-06-05       Impact factor: 2.352

4.  A tris(2,2'-bipyridyl)cobalt(III)-bovine serum albumin composite membrane for biosensors.

Authors:  Ying Zhuo; Ruo Yuan; Yaqin Chai; Aili Sun; Ying Zhang; Jiuzhi Yang
Journal:  Biomaterials       Date:  2006-07-13       Impact factor: 12.479

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

Review 1.  The Early Years of 2,2'-Bipyridine-A Ligand in Its Own Lifetime.

Authors:  Edwin C Constable; Catherine E Housecroft
Journal:  Molecules       Date:  2019-10-31       Impact factor: 4.411

2.  Towards a selective synthetic route for cobalt amino acid complexes and their application in ring opening polymerization of rac-lactide.

Authors:  Andrés Castro Ruiz; Krishna K Damodaran; Sigridur G Suman
Journal:  RSC Adv       Date:  2021-05-04       Impact factor: 4.036

3.  Light-Driven Water Oxidation with Ligand-Engineered Prussian Blue Analogues.

Authors:  Aliyu A Ahmad; T Gamze Ulusoy Ghobadi; Muhammed Buyuktemiz; Ekmel Ozbay; Yavuz Dede; Ferdi Karadas
Journal:  Inorg Chem       Date:  2022-02-24       Impact factor: 5.165

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.