Literature DB >> 21753952

catena-Poly[[[diaqua-(1,3-benzimidazole-κN)manganese(II)]-μ-benzene-1,3-di-carboxyl-ato-κO,O:O] dihydrate].

Xiao-Hui Wang1.   

Abstract

In the polymeric title complex, {[Mn(C(8)H(4)O(4))(C(7)H(6)N(2))(H(2)O)(2)]·2H(2)O}(n), the Mn(II) cation is coordinated by two benzene-dicarboxyl-ate anions, one benzimidazole ligand and two water mol-ecules in a distorted MnNO(5) octa-hedral geometry. In the crystal, each benzene-dicarboxyl-ate anion bridges adjacent Mn(II) cations through the terminal carboxyl-ate groups, forming a polymeric complex chain along the a axis. One Mn-O(carboxyl-ate) bond is much longer than the others. In the crystal, π-π stacking is observed between nearly parallel [dihedral angle = 4.32 (6)°] benzimidazole aromatic ring systems of adjacent mol-ecules, the centroid-centroid distance between the imidazole and benzene rings being 3.5421 (11) Å. Extensive inter-molecular O-H⋯O and N-H⋯O hydrogen bonding is present in the crystal structure. The two lattice water mol-ecules are located on twofold rotation axes.

Entities:  

Year:  2011        PMID: 21753952      PMCID: PMC3099958          DOI: 10.1107/S1600536811008555

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to π–π stacking, see: Deisenhofer & Michel (1989 ▶). For a related structure, see: Hu et al. (2006 ▶). For a longer Mn—O bond length in complex with a seven-coordinate MnII atom, see: Liu et al. (2005 ▶).

Experimental

Crystal data

[Mn(C8H4O4)(C7H6N2)(H2O)2]·2H2O M = 409.25 Orthorhombic, a = 18.9148 (12) Å b = 23.7112 (16) Å c = 7.8701 (4) Å V = 3529.7 (4) Å3 Z = 8 Mo Kα radiation μ = 0.79 mm−1 T = 292 K 0.24 × 0.20 × 0.18 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.786, T max = 0.880 20574 measured reflections 4043 independent reflections 3261 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.091 S = 1.04 4043 reflections 236 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.26 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811008555/xu5169sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811008555/xu5169Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C8H4O4)(C7H6N2)(H2O)2]·2H2OF(000) = 1688
Mr = 409.25Dx = 1.540 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 8868 reflections
a = 18.9148 (12) Åθ = 3.0–25.0°
b = 23.7112 (16) ŵ = 0.79 mm1
c = 7.8701 (4) ÅT = 292 K
V = 3529.7 (4) Å3Prism, yellow
Z = 80.24 × 0.20 × 0.18 mm
Rigaku R-AXIS RAPID IP diffractometer4043 independent reflections
Radiation source: fine-focus sealed tube3261 reflections with I > 2σ(I)
graphiteRint = 0.029
ω scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −24→20
Tmin = 0.786, Tmax = 0.880k = −30→30
20574 measured reflectionsl = −10→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0428P)2 + 2.5725P] where P = (Fo2 + 2Fc2)/3
4043 reflections(Δ/σ)max = 0.002
236 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn0.714708 (13)0.679735 (11)0.66543 (3)0.01758 (9)
N10.63968 (9)0.50825 (7)0.6050 (2)0.0300 (4)
H10.60840.48480.56910.036*
N30.69188 (8)0.59024 (6)0.66113 (19)0.0227 (3)
O10.37986 (7)0.73206 (5)0.33053 (17)0.0255 (3)
O20.32557 (7)0.81586 (6)0.33551 (17)0.0278 (3)
O30.60704 (7)0.71200 (6)0.64217 (17)0.0283 (3)
O40.67794 (7)0.78568 (7)0.65720 (16)0.0305 (3)
O50.71498 (6)0.68148 (5)0.94037 (17)0.0232 (3)
H5A0.75340.68971.00010.035*
H5B0.67930.69371.00100.035*
O60.71830 (6)0.69029 (5)0.39202 (17)0.0234 (3)
H6A0.75720.69630.34180.035*
H6B0.68610.70250.32470.035*
O70.50000.66207 (9)0.25000.0384 (5)
H7A0.46050.68690.24190.058*
O80.50000.64354 (8)0.75000.0321 (4)
H8A0.53640.66850.71710.048*
O90.45942 (9)0.57472 (7)0.4780 (2)0.0496 (4)
H9A0.47130.59960.38860.074*
H9B0.47730.59050.57370.074*
C20.63681 (10)0.56472 (8)0.5930 (2)0.0277 (4)
H20.59960.58390.54170.033*
C40.79996 (10)0.54864 (8)0.8052 (2)0.0270 (4)
H40.82200.58270.82970.032*
C50.83029 (11)0.49747 (9)0.8501 (3)0.0333 (5)
H50.87390.49720.90490.040*
C60.79648 (12)0.44598 (9)0.8146 (3)0.0357 (5)
H60.81800.41250.84820.043*
C70.73256 (12)0.44362 (8)0.7318 (3)0.0340 (5)
H70.71060.40940.70770.041*
C80.70224 (11)0.49489 (8)0.6857 (2)0.0264 (4)
C90.73497 (10)0.54671 (7)0.7219 (2)0.0229 (4)
C100.37791 (9)0.78435 (8)0.3620 (2)0.0215 (4)
C110.44298 (9)0.81128 (7)0.4375 (2)0.0202 (3)
C120.49726 (9)0.77770 (7)0.5012 (2)0.0203 (3)
H120.49240.73870.50030.024*
C130.55886 (9)0.80183 (8)0.5661 (2)0.0217 (4)
C140.56567 (10)0.86047 (8)0.5684 (2)0.0275 (4)
H140.60690.87700.60950.033*
C150.51092 (11)0.89410 (8)0.5092 (3)0.0315 (4)
H150.51520.93310.51340.038*
C160.44988 (10)0.86999 (8)0.4437 (2)0.0255 (4)
H160.41350.89290.40380.031*
C170.61786 (9)0.76481 (8)0.6275 (2)0.0242 (4)
U11U22U33U12U13U23
Mn0.01342 (14)0.02063 (14)0.01869 (15)0.00030 (9)0.00052 (9)0.00094 (10)
N10.0311 (9)0.0279 (8)0.0310 (9)−0.0081 (7)0.0018 (7)−0.0039 (7)
N30.0232 (7)0.0235 (8)0.0215 (8)0.0005 (6)0.0010 (6)−0.0007 (6)
O10.0192 (6)0.0291 (7)0.0282 (7)−0.0034 (5)−0.0031 (5)−0.0002 (5)
O20.0157 (6)0.0364 (7)0.0313 (8)0.0021 (5)−0.0017 (5)0.0056 (6)
O30.0188 (6)0.0350 (7)0.0310 (7)0.0057 (5)0.0008 (5)0.0066 (6)
O40.0143 (6)0.0546 (9)0.0226 (7)−0.0021 (6)−0.0021 (5)0.0012 (6)
O50.0179 (6)0.0317 (7)0.0201 (6)−0.0003 (5)0.0006 (5)−0.0032 (5)
O60.0184 (6)0.0324 (7)0.0195 (6)0.0012 (5)0.0016 (5)0.0048 (5)
O70.0381 (12)0.0359 (11)0.0413 (13)0.0000.0073 (10)0.000
O80.0264 (10)0.0320 (10)0.0379 (12)0.0000.0047 (9)0.000
O90.0577 (11)0.0495 (10)0.0417 (10)−0.0234 (8)−0.0079 (8)0.0003 (8)
C20.0271 (10)0.0297 (10)0.0264 (10)−0.0010 (8)0.0011 (8)−0.0030 (8)
C40.0273 (10)0.0285 (9)0.0253 (10)−0.0021 (7)0.0028 (7)0.0022 (7)
C50.0318 (11)0.0394 (11)0.0288 (11)0.0076 (9)0.0014 (8)0.0056 (8)
C60.0468 (13)0.0282 (10)0.0321 (11)0.0115 (9)0.0113 (9)0.0069 (8)
C70.0491 (13)0.0219 (9)0.0310 (11)−0.0005 (8)0.0116 (9)0.0003 (8)
C80.0317 (10)0.0250 (9)0.0224 (9)−0.0036 (7)0.0070 (8)−0.0010 (7)
C90.0271 (9)0.0219 (8)0.0195 (9)0.0004 (7)0.0056 (7)0.0010 (7)
C100.0156 (8)0.0308 (9)0.0179 (8)−0.0014 (6)0.0015 (6)0.0033 (7)
C110.0149 (8)0.0288 (9)0.0170 (8)0.0004 (6)0.0012 (6)0.0001 (7)
C120.0172 (8)0.0259 (8)0.0178 (8)0.0003 (6)0.0022 (6)−0.0008 (7)
C130.0171 (8)0.0309 (9)0.0171 (8)0.0006 (7)0.0009 (7)−0.0002 (7)
C140.0213 (9)0.0345 (10)0.0267 (10)−0.0058 (7)−0.0030 (7)−0.0035 (8)
C150.0311 (11)0.0261 (9)0.0373 (12)−0.0019 (8)−0.0034 (9)−0.0019 (8)
C160.0214 (9)0.0287 (9)0.0265 (9)0.0047 (7)−0.0011 (7)0.0008 (7)
C170.0164 (8)0.0396 (11)0.0165 (8)0.0035 (7)0.0023 (6)0.0003 (7)
Mn—N32.1657 (15)C2—H20.9300
Mn—O2i2.0995 (13)C4—C51.388 (3)
Mn—O32.1832 (13)C4—C91.394 (3)
Mn—O42.6075 (16)C4—H40.9300
Mn—O52.1642 (14)C5—C61.406 (3)
Mn—O62.1674 (14)C5—H50.9300
N1—C21.343 (2)C6—C71.375 (3)
N1—C81.380 (3)C6—H60.9300
N1—H10.8600C7—C81.392 (3)
N3—C21.319 (2)C7—H70.9300
N3—C91.400 (2)C8—C91.405 (3)
O1—C101.265 (2)C10—C111.509 (2)
O2—C101.258 (2)C11—C121.393 (2)
O3—C171.274 (2)C11—C161.399 (3)
O4—C171.261 (2)C12—C131.395 (2)
O5—H5A0.8866C12—H120.9300
O5—H5B0.8758C13—C141.396 (3)
O6—H6A0.8469C13—C171.500 (2)
O6—H6B0.8576C14—C151.388 (3)
O7—H7A0.9532C14—H140.9300
O8—H8A0.9437C15—C161.388 (3)
O9—H9A0.9455C15—H150.9300
O9—H9B0.9065C16—H160.9300
O2i—Mn—O590.01 (5)C7—C6—H6119.0
O2i—Mn—N3104.35 (6)C5—C6—H6119.0
O5—Mn—N392.00 (5)C6—C7—C8116.76 (19)
O2i—Mn—O687.68 (5)C6—C7—H7121.6
O5—Mn—O6172.03 (5)C8—C7—H7121.6
N3—Mn—O695.96 (5)N1—C8—C7132.35 (19)
O2i—Mn—O3156.06 (5)N1—C8—C9105.70 (16)
O5—Mn—O394.55 (5)C7—C8—C9121.95 (19)
N3—Mn—O398.98 (6)C4—C9—N3130.56 (17)
O6—Mn—O384.58 (5)C4—C9—C8120.85 (17)
C2—N1—C8107.21 (16)N3—C9—C8108.60 (16)
C2—N1—H1126.4O2—C10—O1124.95 (16)
C8—N1—H1126.4O2—C10—C11117.13 (16)
C2—N3—C9105.11 (15)O1—C10—C11117.92 (15)
C2—N3—Mn127.84 (13)C12—C11—C16119.20 (16)
C9—N3—Mn126.95 (12)C12—C11—C10120.08 (15)
C10—O2—Mnii144.73 (12)C16—C11—C10120.72 (16)
C17—O3—Mn101.66 (11)C11—C12—C13120.86 (16)
Mn—O5—H5A122.4C11—C12—H12119.6
Mn—O5—H5B123.3C13—C12—H12119.6
H5A—O5—H5B105.7C12—C13—C14119.34 (16)
Mn—O6—H6A120.7C12—C13—C17119.96 (16)
Mn—O6—H6B129.0C14—C13—C17120.67 (16)
H6A—O6—H6B105.8C15—C14—C13119.94 (17)
H9A—O9—H9B105.8C15—C14—H14120.0
N3—C2—N1113.38 (18)C13—C14—H14120.0
N3—C2—H2123.3C14—C15—C16120.60 (18)
N1—C2—H2123.3C14—C15—H15119.7
C5—C4—C9117.11 (18)C16—C15—H15119.7
C5—C4—H4121.4C15—C16—C11120.02 (17)
C9—C4—H4121.4C15—C16—H16120.0
C4—C5—C6121.4 (2)C11—C16—H16120.0
C4—C5—H5119.3O4—C17—O3120.89 (17)
C6—C5—H5119.3O4—C17—C13120.04 (17)
C7—C6—C5121.98 (19)O3—C17—C13119.01 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O9iii0.861.942.795 (2)171
O5—H5A···O4iv0.891.892.7605 (18)168
O5—H5B···O1v0.881.962.8120 (18)164
O6—H6A···O4vi0.851.952.7553 (18)159
O6—H6B···O1vii0.861.882.7379 (18)176
O7—H7A···O10.951.992.8844 (18)155
O8—H8A···O30.941.792.7303 (18)176
O9—H9A···O70.941.922.846 (2)167
O9—H9B···O80.911.922.799 (2)162
Table 1

Selected bond lengths (Å)

Mn—N32.1657 (15)
Mn—O2i2.0995 (13)
Mn—O32.1832 (13)
Mn—O42.6075 (16)
Mn—O52.1642 (14)
Mn—O62.1674 (14)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O9ii0.861.942.795 (2)171
O5—H5A⋯O4iii0.891.892.7605 (18)168
O5—H5B⋯O1iv0.881.962.8120 (18)164
O6—H6A⋯O4v0.851.952.7553 (18)159
O6—H6B⋯O1vi0.861.882.7379 (18)176
O7—H7A⋯O10.951.992.8844 (18)155
O8—H8A⋯O30.941.792.7303 (18)176
O9—H9A⋯O70.941.922.846 (2)167
O9—H9B⋯O80.911.922.799 (2)162

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Review 3.  Nobel lecture. The photosynthetic reaction centre from the purple bacterium Rhodopseudomonas viridis.

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