Literature DB >> 21753862

Approximate Methods for State-Space Models.

Shinsuke Koyama1, Lucia Castellanos Pérez-Bolde, Cosma Rohilla Shalizi, Robert E Kass.   

Abstract

State-space models provide an important body of techniques for analyzing time-series, but their use requires estimating unobserved states. The optimal estimate of the state is its conditional expectation given the observation histories, and computing this expectation is hard when there are nonlinearities. Existing filtering methods, including sequential Monte Carlo, tend to be either inaccurate or slow. In this paper, we study a nonlinear filter for nonlinear/non-Gaussian state-space models, which uses Laplace's method, an asymptotic series expansion, to approximate the state's conditional mean and variance, together with a Gaussian conditional distribution. This Laplace-Gaussian filter (LGF) gives fast, recursive, deterministic state estimates, with an error which is set by the stochastic characteristics of the model and is, we show, stable over time. We illustrate the estimation ability of the LGF by applying it to the problem of neural decoding and compare it to sequential Monte Carlo both in simulations and with real data. We find that the LGF can deliver superior results in a small fraction of the computing time.

Entities:  

Year:  2010        PMID: 21753862      PMCID: PMC3132892          DOI: 10.1198/jasa.2009.tm08326

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  14 in total

1.  The time-rescaling theorem and its application to neural spike train data analysis.

Authors:  Emery N Brown; Riccardo Barbieri; Valérie Ventura; Robert E Kass; Loren M Frank
Journal:  Neural Comput       Date:  2002-02       Impact factor: 2.026

2.  A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects.

Authors:  Wilson Truccolo; Uri T Eden; Matthew R Fellows; John P Donoghue; Emery N Brown
Journal:  J Neurophysiol       Date:  2004-09-08       Impact factor: 2.714

3.  Recursive bayesian decoding of motor cortical signals by particle filtering.

Authors:  A E Brockwell; A L Rojas; R E Kass
Journal:  J Neurophysiol       Date:  2004-04       Impact factor: 2.714

4.  Construction of point process adaptive filter algorithms for neural systems using sequential Monte Carlo methods.

Authors:  Ayla Ergün; Riccardo Barbieri; Uri T Eden; Matthew A Wilson; Emery N Brown
Journal:  IEEE Trans Biomed Eng       Date:  2007-03       Impact factor: 4.538

5.  Motor cortical representation of position and velocity during reaching.

Authors:  Wei Wang; Sherwin S Chan; Dustin A Heldman; Daniel W Moran
Journal:  J Neurophysiol       Date:  2007-03-28       Impact factor: 2.714

6.  Cortical control of a prosthetic arm for self-feeding.

Authors:  Meel Velliste; Sagi Perel; M Chance Spalding; Andrew S Whitford; Andrew B Schwartz
Journal:  Nature       Date:  2008-05-28       Impact factor: 49.962

7.  Statistical Signal Processing and the Motor Cortex.

Authors:  A E Brockwell; R E Kass; A B Schwartz
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2007-05       Impact factor: 10.961

8.  Primate motor cortex and free arm movements to visual targets in three-dimensional space. III. Positional gradients and population coding of movement direction from various movement origins.

Authors:  R E Kettner; A B Schwartz; A P Georgopoulos
Journal:  J Neurosci       Date:  1988-08       Impact factor: 6.167

9.  Neuronal population coding of movement direction.

Authors:  A P Georgopoulos; A B Schwartz; R E Kettner
Journal:  Science       Date:  1986-09-26       Impact factor: 47.728

10.  Instant neural control of a movement signal.

Authors:  Mijail D Serruya; Nicholas G Hatsopoulos; Liam Paninski; Matthew R Fellows; John P Donoghue
Journal:  Nature       Date:  2002-03-14       Impact factor: 49.962

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  15 in total

1.  Comparison of brain-computer interface decoding algorithms in open-loop and closed-loop control.

Authors:  Shinsuke Koyama; Steven M Chase; Andrew S Whitford; Meel Velliste; Andrew B Schwartz; Robert E Kass
Journal:  J Comput Neurosci       Date:  2009-11-11       Impact factor: 1.621

2.  Motor cortical correlates of arm resting in the context of a reaching task and implications for prosthetic control.

Authors:  Meel Velliste; Scott D Kennedy; Andrew B Schwartz; Andrew S Whitford; Jeong-Woo Sohn; Angus J C McMorland
Journal:  J Neurosci       Date:  2014-04-23       Impact factor: 6.167

3.  Single-unit activity, threshold crossings, and local field potentials in motor cortex differentially encode reach kinematics.

Authors:  Sagi Perel; Patrick T Sadtler; Emily R Oby; Stephen I Ryu; Elizabeth C Tyler-Kabara; Aaron P Batista; Steven M Chase
Journal:  J Neurophysiol       Date:  2015-07-01       Impact factor: 2.714

4.  Firing rate estimation using infinite mixture models and its application to neural decoding.

Authors:  Ryohei Shibue; Fumiyasu Komaki
Journal:  J Neurophysiol       Date:  2017-08-09       Impact factor: 2.714

5.  Coupling Time Decoding and Trajectory Decoding using a Target-Included Model in the Motor Cortex.

Authors:  Vernon Lawhern; Nicholas G Hatsopoulos; Wei Wu
Journal:  Neurocomputing       Date:  2012-04-01       Impact factor: 5.719

6.  The Discriminative Kalman Filter for Bayesian Filtering with Nonlinear and Nongaussian Observation Models.

Authors:  Michael C Burkhart; David M Brandman; Brian Franco; Leigh R Hochberg; Matthew T Harrison
Journal:  Neural Comput       Date:  2020-03-18       Impact factor: 2.026

7.  To sort or not to sort: the impact of spike-sorting on neural decoding performance.

Authors:  Sonia Todorova; Patrick Sadtler; Aaron Batista; Steven Chase; Valérie Ventura
Journal:  J Neural Eng       Date:  2014-08-01       Impact factor: 5.379

8.  A state space approach for piecewise-linear recurrent neural networks for identifying computational dynamics from neural measurements.

Authors:  Daniel Durstewitz
Journal:  PLoS Comput Biol       Date:  2017-06-02       Impact factor: 4.475

9.  A unified point process probabilistic framework to assess heartbeat dynamics and autonomic cardiovascular control.

Authors:  Zhe Chen; Patrick L Purdon; Emery N Brown; Riccardo Barbieri
Journal:  Front Physiol       Date:  2012-02-01       Impact factor: 4.566

10.  Extended Variational Message Passing for Automated Approximate Bayesian Inference.

Authors:  Semih Akbayrak; Ivan Bocharov; Bert de Vries
Journal:  Entropy (Basel)       Date:  2021-06-26       Impact factor: 2.524

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