Literature DB >> 21750227

Single-nucleotide polymorphisms (5p15.33, 15q25.1, 6p22.1, 6q27 and 7p15.3) and lung cancer survival in the European Prospective Investigation into Cancer and Nutrition (EPIC).

Wei Wei Xun1, Paul Brennan, Anne Tjonneland, Ulla Vogel, Kim Overvad, Rudolf Kaaks, Federico Canzian, Heiner Boeing, Antonia Trichopoulou, Erifili Oustoglou, Zoi Giotaki, Mattias Johansson, Domenico Palli, Claudia Agnoli, Rosario Tumino, Carlotta Sacerdote, Salvatore Panico, H Bas Bueno-de-Mesquita, Petra H M Peeters, Eiliv Lund, Merethe Kumle, Laudina Rodríguez, Antonio Agudo, Maria-José Sánchez, Larraitz Arriola, María-Dolores Chirlaque, Aurelio Barricarte, Göran Hallmans, Torgny Rasmuson, Kay-Tee Khaw, Nicholas Wareham, Tim Key, Elio Riboli, Paolo Vineis.   

Abstract

The single-nucleotide polymorphisms (SNPs) rs402710 (5p15.33), rs16969968 and rs8034191 (15q25.1) have been consistently identified by genome-wide association studies (GWAS) as significant predictors of lung cancer risk, while rs4324798 (6p22.1) was previously found to influence survival time in small-cell lung cancer (SCLC) patients. Using the same population of one of the original GWAS, we investigated whether the selected SNPs and 31 others (also identified in GWAS) influence survival time, assuming an additive model. The effect of each polymorphism on all cause survival was estimated in 1094 lung cancer patients, and lung cancer-specific survival in 763 patients, using Cox regression adjusted for a priori confounders and competing causes of death where appropriate. Overall, after 1558 person-years of post-diagnostic follow-up, 874 deaths occurred from all causes, including 690 from lung cancer. In the lung cancer-specific survival analysis (1102 person-years), only rs7452888 (6q27) and rs2710994 (7p15.3) modified survival, with adjusted hazard ratios of 1.19 (P = 0.009) and 1.32 (P = 0.011) respectively, taking competing risks into account. Some weak associations were identified in subgroup analysis for rs16969968 and rs8034191 (15q25.1) and rs4324798 (6p22.1) and survival in never-smokers, as well as for rs402710 in current smokers and SCLC patients. In conclusion, rs402710 (5p15.33), rs16969968 and rs8034191 (both 15q25.1) and rs4324798 (6p22.1) were found to be unrelated to survival times in this large cohort of lung cancer patients, regardless of whether the cause of death was from lung cancer or not. However, rs7452888 (6q27) was identified as a possible candidate SNP to influence lung cancer survival, while stratified analysis hinted at a possible role for rs8034191, rs16969968 (15q25.1) and rs4324798 (6p22.1) in influencing survival time in lung cancer patients who were never-smokers, based on a small sample.

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Year:  2011        PMID: 21750227     DOI: 10.1093/mutage/ger030

Source DB:  PubMed          Journal:  Mutagenesis        ISSN: 0267-8357            Impact factor:   3.000


  11 in total

1.  Investigation of Leukocyte Telomere Length and Genetic Variants in Chromosome 5p15.33 as Prognostic Markers in Lung Cancer.

Authors:  Linda Kachuri; Jens Helby; Stig Egil Bojesen; David C Christiani; Li Su; Xifeng Wu; Adonina Tardón; Guillermo Fernández-Tardón; John K Field; Michael P Davies; Chu Chen; Gary E Goodman; Frances A Shepherd; Natasha B Leighl; Ming S Tsao; Yonathan Brhane; M Catherine Brown; Kevin Boyd; Daniel Shepshelovich; Lei Sun; Christopher I Amos; Geoffrey Liu; Rayjean J Hung
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-07       Impact factor: 4.254

2.  Germline Genetic Variants and Lung Cancer Survival in African Americans.

Authors:  Carissa C Jones; William S Bush; Dana C Crawford; Angela S Wenzlaff; Ann G Schwartz; John K Wiencke; Margaret R Wrensch; William J Blot; Stephen J Chanock; Eric L Grogan; Melinda C Aldrich
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2017-06-15       Impact factor: 4.254

Review 3.  Single nucleotide polymorphisms as susceptibility, prognostic, and therapeutic markers of nonsmall cell lung cancer.

Authors:  Shanbeh Zienolddiny; Vidar Skaug
Journal:  Lung Cancer (Auckl)       Date:  2011-12-29

4.  Epigenetic regulation of the Wnt signaling inhibitor DACT2 in human hepatocellular carcinoma.

Authors:  Xiaomei Zhang; Yunsheng Yang; Xuefeng Liu; James G Herman; Malcolm V Brock; Julien D F Licchesi; Wen Yue; Xuetao Pei; Mingzhou Guo
Journal:  Epigenetics       Date:  2013-02-28       Impact factor: 4.528

5.  A Bayesian approach to identify genes and gene-level SNP aggregates in a genetic analysis of cancer data.

Authors:  Francesco C Stingo; Michael D Swartz; Marina Vannucci
Journal:  Stat Interface       Date:  2015       Impact factor: 0.582

Review 6.  From men to mice: CHRNA5/CHRNA3, smoking behavior and disease.

Authors:  Jennifer J Ware; Marianne van den Bree; Marcus R Munafò
Journal:  Nicotine Tob Res       Date:  2012-04-27       Impact factor: 4.244

7.  Methylation of DACT2 promotes papillary thyroid cancer metastasis by activating Wnt signaling.

Authors:  Zhiyan Zhao; James G Herman; Malcolm V Brock; Jindong Sheng; Meiying Zhang; Baoguo Liu; Mingzhou Guo
Journal:  PLoS One       Date:  2014-11-06       Impact factor: 3.240

8.  Prognostic relevance of urinary bladder cancer susceptibility loci.

Authors:  Anne J Grotenhuis; Aleksandra M Dudek; Gerald W Verhaegh; J Alfred Witjes; Katja K Aben; Saskia L van der Marel; Sita H Vermeulen; Lambertus A Kiemeney
Journal:  PLoS One       Date:  2014-02-25       Impact factor: 3.240

9.  The SNP rs402710 in 5p15.33 is associated with lung cancer risk: a replication study in Chinese population and a meta-analysis.

Authors:  Xuzai Lu; Juntao Ke; Xia Luo; Yaowu Zhu; Li Zou; Huijun Li; Beibei Zhu; Zhigang Xiong; Wei Chen; Lingyan Deng; Jiao Lou; Xianxiu Wang; Yu Zhang; Zhenling Wang; Xiaoping Miao; Liming Cheng
Journal:  PLoS One       Date:  2013-10-23       Impact factor: 3.240

10.  A Novel Genetic Variant in Long Non-coding RNA Gene NEXN-AS1 is Associated with Risk of Lung Cancer.

Authors:  Hua Yuan; Hongliang Liu; Zhensheng Liu; Kouros Owzar; Younghun Han; Li Su; Yongyue Wei; Rayjean J Hung; John McLaughlin; Yonathan Brhane; Paul Brennan; Heike Bickeboeller; Albert Rosenberger; Richard S Houlston; Neil Caporaso; Maria Teresa Landi; Joachim Heinrich; Angela Risch; David C Christiani; Zeynep H Gümüş; Robert J Klein; Christopher I Amos; Qingyi Wei
Journal:  Sci Rep       Date:  2016-10-07       Impact factor: 4.379

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