Literature DB >> 21748362

Construction and validation of two metagenomic DNA libraries from Cerrado soil with high clay content.

Alinne Pereira de Castro1, Betania Ferraz Quirino, Heather Allen, Lynn L Williamson, Jo Handelsman, Ricardo Henrique Krüger.   

Abstract

A challenge of metagenomic studies is in the extraction and purification of DNA from environmental samples. The soils of the Cerrado region of Brazil present several technical difficulties to DNA extraction: high clay content (>55% w/w), low pH (4.7) and high iron levels (146 ppm). Here we describe for the first time the efficient recovery and purification of microbial DNA associated with these unusual soil characteristics and the construction and validation of two metagenomic libraries: a 150,000 clones library with insert size of approximately 8 kb and a 65,000 clones library with insert size of approximately 35 kb. The construction of these metagenomic libraries will allow the biotechnological exploitation of the microbial community present in the soil from this endangered biome.

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Year:  2011        PMID: 21748362     DOI: 10.1007/s10529-011-0693-6

Source DB:  PubMed          Journal:  Biotechnol Lett        ISSN: 0141-5492            Impact factor:   2.461


  6 in total

1.  A hydrolase with esterase activity expressed from a fosmid gene bank prepared from DNA of a North West Himalayan glacier frozen soil sample.

Authors:  Verruchi Gupta; Inderpal Singh; Paramdeep Kumar; Shafaq Rasool; Vijeshwar Verma
Journal:  3 Biotech       Date:  2019-02-26       Impact factor: 2.406

2.  Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes.

Authors:  Elisa C P Catão; Fabyano A C Lopes; Janaína F Araújo; Alinne P de Castro; Cristine C Barreto; Mercedes M C Bustamante; Betania F Quirino; Ricardo H Krüger
Journal:  Int J Microbiol       Date:  2014-09-15

3.  Shifts in taxonomic and functional microbial diversity with agriculture: How fragile is the Brazilian Cerrado?

Authors:  Renata Carolini Souza; Iêda Carvalho Mendes; Fábio Bueno Reis-Junior; Fabíola Marques Carvalho; Marco Antonio Nogueira; Ana Tereza Ribeiro Vasconcelos; Vânia Aparecida Vicente; Mariangela Hungria
Journal:  BMC Microbiol       Date:  2016-03-16       Impact factor: 3.605

4.  Kisameet Glacial Clay: an Unexpected Source of Bacterial Diversity.

Authors:  Sarah L Svensson; Shekooh Behroozian; Wanjing Xu; Michael G Surette; Loretta Li; Julian Davies
Journal:  MBio       Date:  2017-05-23       Impact factor: 7.867

5.  Effect of sugarcane burning or green harvest methods on the Brazilian Cerrado soil bacterial community structure.

Authors:  Caio T C C Rachid; Adriana L Santos; Marisa C Piccolo; Fabiano C Balieiro; Heitor L C Coutinho; Raquel S Peixoto; James M Tiedje; Alexandre S Rosado
Journal:  PLoS One       Date:  2013-03-22       Impact factor: 3.240

6.  Microbial Diversity in Cerrado Biome (Neotropical Savanna) Soils.

Authors:  Alinne Pereira de Castro; Maria Regina Silveira Sartori da Silva; Betania Ferraz Quirino; Mercedes Maria da Cunha Bustamante; Ricardo Henrique Krüger
Journal:  PLoS One       Date:  2016-02-05       Impact factor: 3.240

  6 in total

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