Literature DB >> 21745142

Genome size variation in Corchorus olitorius (Malvaceae s.l.) and its correlation with elevation and phenotypic traits.

Solomon Benor1, Jörg Fuchs, Frank R Blattner.   

Abstract

In this study, we report genome size variations in Corchorus olitorius L. (Malvaceae s.l.), a crop species known for its morphological plasticity and broad geographical distribution, and Corchorus capsularis L., the second widely cultivated species in the genus. Flow cytometric analyses were conducted with several tissues and nuclei isolation buffers using 69 accessions of C. olitorius and 4 accessions of C. capsularis, representing different habitats and geographical origins. The mean 2C nuclear DNA content (± SD) of C. olitorius was estimated to be 0.918 ± 0.011 pg, with a minimum of 0.882 ± 0.004 pg, and a maximum of 0.942 ± 0.004 pg. All studied plant materials were found to be diploid with 2n = 14. The genome size is negatively correlated with days to flowering (r = -0.29, p < 0.05) and positively with seed surface area (r = 0.38, p < 0.05). Moreover, a statistically significant positive correlation was detected between genome size and growing elevation (r = 0.59, p < 0.001) in wild populations. The mean 2C nuclear DNA content of C. capsularis was estimated to be 0.802 ± 0.008 pg. In comparison to other economically important crop species, the genome sizes of C. olitorius and C. capsularis are much smaller, and therewith closer to that of rice. The relatively small genome sizes will be of general advantage for any efforts into genomics or sequencing approaches of these species.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21745142     DOI: 10.1139/g11-021

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  7 in total

1.  Small genomes and large seeds: chromosome numbers, genome size and seed mass in diploid Aesculus species (Sapindaceae).

Authors:  Anna Krahulcová; Pavel Trávnícek; František Krahulec; Marcel Rejmánek
Journal:  Ann Bot       Date:  2017-04-01       Impact factor: 4.357

2.  Development of SSR markers and construction of a linkage map in jute.

Authors:  Moumita Das; Sumana Banerjee; Raman Dhariwal; Shailendra Vyas; Reyazul R Mir; Niladri Topdar; Avijit Kundu; Jitendra P Khurana; Akhilesh K Tyagi; Debabrata Sarkar; Mohit K Sinha; Harindra S Balyan; Pushpendra K Gupta
Journal:  J Genet       Date:  2012       Impact factor: 1.166

3.  Role of adaptive and non-adaptive mechanisms forming complex patterns of genome size variation in six cytotypes of polyploid Allium oleraceum (Amaryllidaceae) on a continental scale.

Authors:  Martin Duchoslav; Lenka Šafářová; Michaela Jandová
Journal:  Ann Bot       Date:  2013-01-24       Impact factor: 4.357

4.  Comparative molecular cytogenetic analyses of a major tandemly repeated DNA family and retrotransposon sequences in cultivated jute Corchorus species (Malvaceae).

Authors:  Rabeya Begum; Falk Zakrzewski; Gerhard Menzel; Beatrice Weber; Sheikh Shamimul Alam; Thomas Schmidt
Journal:  Ann Bot       Date:  2013-05-10       Impact factor: 4.357

5.  Genome size, cytogenetic data and transferability of EST-SSRs markers in wild and cultivated species of the genus Theobroma L. (Byttnerioideae, Malvaceae).

Authors:  Rangeline Azevedo da Silva; Gustavo Souza; Lívia Santos Lima Lemos; Uilson Vanderlei Lopes; Nara Geórgia Ribeiro Braz Patrocínio; Rafael Moysés Alves; Lucília Helena Marcellino; Didier Clement; Fabienne Micheli; Karina Peres Gramacho
Journal:  PLoS One       Date:  2017-02-10       Impact factor: 3.240

6.  Genome Size Covaries More Positively with Propagule Size than Adult Size: New Insights into an Old Problem.

Authors:  Douglas S Glazier
Journal:  Biology (Basel)       Date:  2021-03-26

7.  Using k-NN to analyse images of diverse germination phenotypes and detect single seed germination in Miscanthus sinensis.

Authors:  Danny Awty-Carroll; John Clifton-Brown; Paul Robson
Journal:  Plant Methods       Date:  2018-01-17       Impact factor: 4.993

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.