Literature DB >> 21744839

Assessment of chemical mixtures and groundwater effects on Daphnia magna transcriptomics.

Natàlia Garcia-Reyero1, B Lynn Escalon, Po Ru Loh, Jennifer G Laird, Alan J Kennedy, Bonnie Berger, Edward J Perkins.   

Abstract

Small organisms can be used as biomonitoring tools to assess chemicals in the environment. Chemical stressors are especially hard to assess and monitor when present as complex mixtures. Here, fifteen polymerase chain reaction assays targeting Daphnia magna genes were calibrated to responses elicited in D. magna exposed for 24 h to five different doses each of the munitions constituents 2,4,6-trinitrotoluene, 2,4-dinitrotoluene, 2,6-dinitrotoluene, trinitrobenzene, dinitrobenzene, or 1,3,5-trinitro-1,3,5-triazacyclohexane. A piecewise-linear model for log-fold expression changes in gene assays was used to predict response to munitions mixtures and contaminated groundwater under the assumption that chemical effects were additive. The correlations of model predictions with actual expression changes ranged from 0.12 to 0.78 with an average of 0.5. To better understand possible mixture effects, gene expression changes from all treatments were compared using high-density microarrays. Whereas mixtures and groundwater exposures had genes and gene functions in common with single chemical exposures, unique functions were also affected, which was consistent with the nonadditivity of chemical effects in these mixtures. These results suggest that, while gene behavior in response to chemical exposure can be partially predicted based on chemical exposure, estimation of the composition of mixtures from chemical responses is difficult without further understanding of gene behavior in mixtures. Future work will need to examine additive and nonadditive mixture effects using a much greater range of different chemical classes in order to clarify the behavior and predictability of complex mixtures.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21744839     DOI: 10.1021/es201245b

Source DB:  PubMed          Journal:  Environ Sci Technol        ISSN: 0013-936X            Impact factor:   9.028


  6 in total

1.  Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae).

Authors:  Courtney N Passow; Anthony P Brown; Lenin Arias-Rodriguez; Muh-Ching Yee; Alexandra Sockell; Manfred Schartl; Wesley C Warren; Carlos Bustamante; Joanna L Kelley; Michael Tobler
Journal:  Mol Ecol       Date:  2017-07-04       Impact factor: 6.185

2.  Gene expression profiling of three different stressors in the water flea Daphnia magna.

Authors:  Mieke Jansen; Lucia Vergauwen; Tine Vandenbrouck; Dries Knapen; Nathalie Dom; Katina I Spanier; Anke Cielen; Luc De Meester
Journal:  Ecotoxicology       Date:  2013-04-06       Impact factor: 2.823

3.  A Bayesian model for the identification of differentially expressed genes in Daphnia magna exposed to munition pollutants.

Authors:  Alberto Cassese; Michele Guindani; Philipp Antczak; Francesco Falciani; Marina Vannucci
Journal:  Biometrics       Date:  2015-03-13       Impact factor: 2.571

4.  Daphnia magna's sense of competition: intra-specific interactions (ISI) alter life history strategies and increase metals toxicity.

Authors:  Kurt A Gust; Alan J Kennedy; Nicolas L Melby; Mitchell S Wilbanks; Jennifer Laird; Barbara Meeks; Erik B Muller; Roger M Nisbet; Edward J Perkins
Journal:  Ecotoxicology       Date:  2016-05-05       Impact factor: 2.823

Review 5.  An Overview of Literature Topics Related to Current Concepts, Methods, Tools, and Applications for Cumulative Risk Assessment (2007-2016).

Authors:  Mary A Fox; L Elizabeth Brewer; Lawrence Martin
Journal:  Int J Environ Res Public Health       Date:  2017-04-07       Impact factor: 3.390

6.  Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors.

Authors:  Dieter I M De Coninck; Jana Asselman; Stephen Glaholt; Colin R Janssen; John K Colbourne; Joseph R Shaw; Karel A C De Schamphelaere
Journal:  Environ Sci Technol       Date:  2014-02-26       Impact factor: 9.028

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.