Literature DB >> 21744175

Multistationarity in mass action networks with applications to ERK activation.

Carsten Conradi1, Dietrich Flockerzi.   

Abstract

Ordinary Differential Equations (ODEs) are an important tool in many areas of Quantitative Biology. For many ODE systems multistationarity (i.e. the existence of at least two positive steady states) is a desired feature. In general establishing multistationarity is a difficult task as realistic biological models are large in terms of states and (unknown) parameters and in most cases poorly parameterized (because of noisy measurement data of few components, a very small number of data points and only a limited number of repetitions). For mass action networks establishing multistationarity hence is equivalent to establishing the existence of at least two positive solutions of a large polynomial system with unknown coefficients. For mass action networks with certain structural properties, expressed in terms of the stoichiometric matrix and the reaction rate-exponent matrix, we present necessary and sufficient conditions for multistationarity that take the form of linear inequality systems. Solutions of these inequality systems define pairs of steady states and parameter values. We also present a sufficient condition to identify networks where the aforementioned conditions hold. To show the applicability of our results we analyse an ODE system that is defined by the mass action network describing the extracellular signal-regulated kinase (ERK) cascade (i.e. ERK-activation).

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Year:  2011        PMID: 21744175     DOI: 10.1007/s00285-011-0453-1

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  21 in total

1.  Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior.

Authors:  R. Thomas; M. Kaufman
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2.  Multistationarity, the basis of cell differentiation and memory. II. Logical analysis of regulatory networks in terms of feedback circuits.

Authors:  R. Thomas; M. Kaufman
Journal:  Chaos       Date:  2001-03       Impact factor: 3.642

Review 3.  The MEK/ERK cascade: from signaling specificity to diverse functions.

Authors:  Yoav D Shaul; Rony Seger
Journal:  Biochim Biophys Acta       Date:  2006-10-19

4.  Using chemical reaction network theory to discard a kinetic mechanism hypothesis.

Authors:  C Conradi; J Saez-Rodriguez; E D Gilles; J Raisch
Journal:  Syst Biol (Stevenage)       Date:  2005-12

5.  Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space.

Authors:  Carsten Conradi; Dietrich Flockerzi; Jörg Raisch
Journal:  Math Biosci       Date:  2007-10-26       Impact factor: 2.144

6.  Bistability and oscillations in chemical reaction networks.

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Journal:  J Math Biol       Date:  2008-11-21       Impact factor: 2.259

Review 7.  The MAPK signaling cascade.

Authors:  R Seger; E G Krebs
Journal:  FASEB J       Date:  1995-06       Impact factor: 5.191

8.  Ultrasensitivity in the mitogen-activated protein kinase cascade.

Authors:  C Y Huang; J E Ferrell
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

9.  Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades.

Authors:  Nick I Markevich; Jan B Hoek; Boris N Kholodenko
Journal:  J Cell Biol       Date:  2004-01-26       Impact factor: 10.539

10.  Bistability and oscillations in the Huang-Ferrell model of MAPK signaling.

Authors:  Liang Qiao; Robert B Nachbar; Ioannis G Kevrekidis; Stanislav Y Shvartsman
Journal:  PLoS Comput Biol       Date:  2007-08-06       Impact factor: 4.475

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  7 in total

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2.  Catalytic constants enable the emergence of bistability in dual phosphorylation.

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Review 3.  Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions.

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Journal:  Biophys J       Date:  2018-02-06       Impact factor: 4.033

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Journal:  J Math Biol       Date:  2021-05-04       Impact factor: 2.259

5.  Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networks.

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Journal:  Cell Commun Signal       Date:  2013-06-26       Impact factor: 5.712

6.  Investigating the Role of TNF-α and IFN-γ Activation on the Dynamics of iNOS Gene Expression in LPS Stimulated Macrophages.

Authors:  Taha Salim; Cheryl L Sershen; Elebeoba E May
Journal:  PLoS One       Date:  2016-06-08       Impact factor: 3.240

7.  Identifying parameter regions for multistationarity.

Authors:  Carsten Conradi; Elisenda Feliu; Maya Mincheva; Carsten Wiuf
Journal:  PLoS Comput Biol       Date:  2017-10-03       Impact factor: 4.475

  7 in total

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