Literature DB >> 21742891

Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture.

Guanhui Bao1, Runjiang Wang, Yan Zhu, Hongjun Dong, Shaoming Mao, Yanping Zhang, Zugen Chen, Yin Li, Yanhe Ma.   

Abstract

Clostridium acetobutylicum is an important microorganism for solvent production. We report the complete genome sequence of C. acetobutylicum DSM 1731, a genome with multireplicon architecture. Comparison with the sequenced type strain C. acetobutylicum ATCC 824, the genome of strain DSM1731 harbors a 1.7-kb insertion and a novel 11.1-kb plasmid, which might have been acquired during evolution.
Copyright © 2011, American Society for Microbiology. All Rights Reserved.

Entities:  

Mesh：

Substances：

Year:  2011        PMID： 21742891      PMCID： PMC3165653          DOI： 10.1128/JB.05596-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program.

Authors:  Christopher A Tomas; Neil E Welker; Eleftherios T Papoutsakis
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

Review 5.  The acetone-butanol-ethanol fermentation.

Authors:  G M Awang; G A Jones; W M Ingledew
Journal:  Crit Rev Microbiol       Date:  1988       Impact factor: 7.624

6.  Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.

Authors:  J Nölling; G Breton; M V Omelchenko; K S Makarova; Q Zeng; R Gibson; H M Lee; J Dubois; D Qiu; J Hitti; Y I Wolf; R L Tatusov; F Sabathe; L Doucette-Stamm; P Soucaille; M J Daly; G N Bennett; E V Koonin; D R Smith
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

7.  Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant.

Authors:  Shaoming Mao; Yuanming Luo; Guanhui Bao; Yanping Zhang; Yin Li; Yanhe Ma
Journal:  Mol Biosyst       Date:  2011-03-08

8.  DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5.

Authors:  Christopher A Tomas; Keith V Alsaker; Hendrik P J Bonarius; Wouter T Hendriksen; He Yang; Jeffrey A Beamish; Carlos J Paredes; Eleftherios T Papoutsakis
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

9.  Versatile and open software for comparing large genomes.

Authors:  Stefan Kurtz; Adam Phillippy; Arthur L Delcher; Michael Smoot; Martin Shumway; Corina Antonescu; Steven L Salzberg
Journal:  Genome Biol       Date:  2004-01-30       Impact factor: 13.583

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
View more
  11 in total

Review 1.  Production of butanol from lignocellulosic biomass: recent advances, challenges, and prospects.

Authors:  Yuan Guo; Yi Liu; Mingdong Guan; Hongchi Tang; Zilong Wang; Lihua Lin; Hao Pang
Journal:  RSC Adv       Date:  2022-06-29       Impact factor: 4.036

2.  Developing controllable hypermutable Clostridium cells through manipulating its methyl-directed mismatch repair system.

Authors:  Guodong Luan; Zhen Cai; Fuyu Gong; Hongjun Dong; Zhao Lin; Yanping Zhang; Yin Li
Journal:  Protein Cell       Date:  2013-11-10       Impact factor: 14.870

3.  Discovery of a novel gene involved in autolysis of Clostridium cells.

Authors:  Liejian Yang; Guanhui Bao; Yan Zhu; Hongjun Dong; Yanping Zhang; Yin Li
Journal:  Protein Cell       Date:  2013-05-23       Impact factor: 14.870

4.  Identification and characterization of two functionally unknown genes involved in butanol tolerance of Clostridium acetobutylicum.

Authors:  Kaizhi Jia; Yanping Zhang; Yin Li
Journal:  PLoS One       Date:  2012-06-29       Impact factor: 3.240

5.  Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer.

Authors:  Jan Kolek; Karel Sedlár; Ivo Provazník; Petra Patáková
Journal:  Genome Announc       Date:  2014-03-20

6.  Intramolecular clasp of the cellulosomal Ruminococcus flavefaciens ScaA dockerin module confers structural stability.

Authors:  Michal Slutzki; Maroor K Jobby; Seth Chitayat; Alon Karpol; Bareket Dassa; Yoav Barak; Raphael Lamed; Steven P Smith; Edward A Bayer
Journal:  FEBS Open Bio       Date:  2013-09-25       Impact factor: 2.693

7.  Elucidating the contributions of multiple aldehyde/alcohol dehydrogenases to butanol and ethanol production in Clostridium acetobutylicum.

Authors:  Zongjie Dai; Hongjun Dong; Yanping Zhang; Yin Li
Journal:  Sci Rep       Date:  2016-06-20       Impact factor: 4.379

8.  Microbial solvent formation revisited by comparative genome analysis.

Authors:  Anja Poehlein; José David Montoya Solano; Stefanie K Flitsch; Preben Krabben; Klaus Winzer; Sharon J Reid; David T Jones; Edward Green; Nigel P Minton; Rolf Daniel; Peter Dürre
Journal:  Biotechnol Biofuels       Date:  2017-03-09       Impact factor: 6.040

9.  Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia.

Authors:  Steven D Brown; Shilpa Nagaraju; Sagar Utturkar; Sashini De Tissera; Simón Segovia; Wayne Mitchell; Miriam L Land; Asela Dassanayake; Michael Köpke
Journal:  Biotechnol Biofuels       Date:  2014-03-21       Impact factor: 6.040

10.  Mutant generation by allelic exchange and genome resequencing of the biobutanol organism Clostridium acetobutylicum ATCC 824.

Authors:  Muhammad Ehsaan; Wouter Kuit; Ying Zhang; Stephen T Cartman; John T Heap; Klaus Winzer; Nigel P Minton
Journal:  Biotechnol Biofuels       Date:  2016-01-04       Impact factor: 6.040
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.