Literature DB >> 21742869

Draft genome sequence of the polycyclic aromatic hydrocarbon-degrading, genetically engineered bioluminescent bioreporter Pseudomonas fluorescens HK44.

Archana Chauhan1, Alice C Layton, Daniel E Williams, Abby E Smartt, Steven Ripp, Tatiana V Karpinets, Steven D Brown, Gary S Sayler.   

Abstract

Pseudomonas fluorescens strain HK44 (DSM 6700) is a genetically engineered lux-based bioluminescent bioreporter. Here we report the draft genome sequence of strain HK44. Annotation of ∼6.1 Mb of sequence indicates that 30% of the traits are unique and distributed over five genomic islands, a prophage, and two plasmids.
Copyright © 2011, American Society for Microbiology. All Rights Reserved.

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Year:  2011        PMID： 21742869      PMCID： PMC3165646          DOI： 10.1128/JB.05530-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Kinetic analysis of bacterial bioluminescence.

Authors:  Christine J Kelly; Chia-Joung Hsiung; Curtis A Lajoie
Journal:  Biotechnol Bioeng       Date:  2003-02-05       Impact factor: 4.530

2.  Whole-genome shotgun optical mapping of Rhodospirillum rubrum.

Authors:  Susan Reslewic; Shiguo Zhou; Mike Place; Yaoping Zhang; Adam Briska; Steve Goldstein; Chris Churas; Rod Runnheim; Dan Forrest; Alex Lim; Alla Lapidus; Cliff S Han; Gary P Roberts; David C Schwartz
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  Application of a luminescence-based biosensor for assessing naphthalene biodegradation in soils from a manufactured gas plant.

Authors:  G I Paton; B J Reid; K T Semple
Journal:  Environ Pollut       Date:  2009-02-05       Impact factor: 8.071

4.  Effect of root-derived substrates on the expression of nah-lux genes in Pseudomonas fluorescens HK44: implications for PAH biodegradation in the rhizosphere.

Authors:  Roopa Kamath; Jerald L Schnoor; Pedro J J Alvarez
Journal:  Environ Sci Technol       Date:  2004-03-15       Impact factor: 9.028

5.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

6.  Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12.

Authors:  Qing Chen; Stephen J Savarino; Malabi M Venkatesan
Journal:  Microbiology       Date:  2006-04       Impact factor: 2.777

7.  Rapid, sensitive bioluminescent reporter technology for naphthalene exposure and biodegradation.

Authors:  J M King; P M Digrazia; B Applegate; R Burlage; J Sanseverino; P Dunbar; F Larimer; G S Sayler
Journal:  Science       Date:  1990-08-17       Impact factor: 47.728

8.  Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Authors:  Ian T Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T DeBoy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Stephen A Sullivan; Mary J Rosovitz; Michelle L Gwinn; Liwei Zhou; Davd J Schneider; Samuel W Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Journal:  Nat Biotechnol       Date:  2005-06-26       Impact factor: 54.908

9.  Response of the bioluminescent bioreporter Pseudomonas fluorescens HK44 to analogs of naphthalene and salicylic acid.

Authors:  J Trögl; G Kuncová; L Kubicová; P Parík; J Hálová; K Demnerová; S Ripp; G S Sayler
Journal:  Folia Microbiol (Praha)       Date:  2007       Impact factor: 2.629

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  5 in total

1.  Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium.

Authors:  David R Singleton; Jing Hu; Michael D Aitken
Journal:  Appl Environ Microbiol       Date:  2012-03-16       Impact factor: 4.792

Review 2.  Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans.

Authors:  Brittan S Scales; Robert P Dickson; John J LiPuma; Gary B Huffnagle
Journal:  Clin Microbiol Rev       Date:  2014-10       Impact factor: 26.132

Review 3.  Pseudomonas fluorescens HK44: lessons learned from a model whole-cell bioreporter with a broad application history.

Authors:  Josef Trögl; Archana Chauhan; Steven Ripp; Alice C Layton; Gabriela Kuncová; Gary S Sayler
Journal:  Sensors (Basel)       Date:  2012-02-06       Impact factor: 3.576

4.  Pseudomonads Rule Degradation of Polyaromatic Hydrocarbons in Aerated Sediment.

Authors:  Jiri Wald; Miluse Hroudova; Jan Jansa; Blanka Vrchotova; Tomas Macek; Ondrej Uhlik
Journal:  Front Microbiol       Date:  2015-11-19       Impact factor: 5.640

Review 5.  Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.

Authors:  Anastasia P Tampakaki
Journal:  Front Plant Sci       Date:  2014-03-27       Impact factor: 5.753
  5 in total

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