Literature DB >> 21737436

spacodiR: structuring of phylogenetic diversity in ecological communities.

Jonathan M Eastman1, C E Timothy Paine, Olivier J Hardy.   

Abstract

MOTIVATION: spacodiR is a cross-platform package, written for the R environment, for studying partitioning of diversity among natural communities in space and time. Complementing and extending existing software, spacodiR allows for hypothesis testing and parameter estimation in studying spatial structuring of species-, phylogenetic- and trait diversities. AVAILABILITY: Integrated with other software in the R environment and with well documented and demonstrated functions, spacodiR is an open-source package and available at http://cran.r-project.org. CONTACT: jonathan.eastman@gmail.com; ohardy@ulb.ac.be.

Mesh：

Year:  2011        PMID： 21737436     DOI： 10.1093/bioinformatics/btr403

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  Cryptic diversity in Indo-Australian rainbowfishes revealed by DNA barcoding: implications for conservation in a biodiversity hotspot candidate.

Authors:  Nicolas Hubert; Renny Kurnia Hadiaty; Emmanuel Paradis; Laurent Pouyaud
Journal:  PLoS One       Date:  2012-07-19       Impact factor: 3.240

2.  Patterns of taxonomic, phylogenetic diversity during a long-term succession of forest on the Loess Plateau, China: insights into assembly process.

Authors:  Yongfu Chai; Ming Yue; Xiao Liu; Yaoxin Guo; Mao Wang; Jinshi Xu; Chenguang Zhang; Yu Chen; Lixia Zhang; Ruichang Zhang
Journal:  Sci Rep       Date:  2016-06-08       Impact factor: 4.379

3.  Stochastic assembly in a subtropical forest chronosequence: evidence from contrasting changes of species, phylogenetic and functional dissimilarity over succession.

Authors:  Xiangcheng Mi; Nathan G Swenson; Qi Jia; Mide Rao; Gang Feng; Haibao Ren; Daniel P Bebber; Keping Ma
Journal:  Sci Rep       Date:  2016-09-07       Impact factor: 4.379

4.  Converting quadratic entropy to diversity: Both animals and alleles are diverse, but some are more diverse than others.

Authors:  Peter E Smouse; Sam C Banks; Rod Peakall
Journal:  PLoS One       Date:  2017-10-31       Impact factor: 3.240

5.  Phylogenetic turnover during subtropical forest succession across environmental and phylogenetic scales.

Authors:  Stefan G Michalski; Helge Bruelheide; Walter Durka
Journal:  Ecol Evol       Date:  2017-11-15       Impact factor: 2.912

6.  Characterizing the phylogenetic tree community structure of a protected tropical rain forest area in Cameroon.

Authors:  Stéphanie Manel; Thomas L P Couvreur; François Munoz; Pierre Couteron; Olivier J Hardy; Bonaventure Sonké
Journal:  PLoS One       Date:  2014-06-17       Impact factor: 3.240
  6 in total

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