Literature DB >> 21736655

Predictions of single-nucleotide polymorphism differentiation between two populations in terms of mutual information.

Roderick C Dewar1, William B Sherwin, Emma Thomas, Clare E Holleley, Richard A Nichols.   

Abstract

Mutual information (I) provides a robust measure of genetic differentiation for the purposes of estimating dispersal between populations. At present, however, there is little predictive theory for I. The growing importance in population biology of analyses of single-nucleotide and other single-feature polymorphisms (SFPs) is a potent reason for developing an analytic theory for I with respect to a single locus. This study represents a first step towards such a theory. We present theoretical predictions of I between two populations with respect to a single haploid biallelic locus. Dynamical and steady-state forecasts of I are derived from a Wright-Fisher model with symmetrical mutation between alleles and symmetrical dispersal between populations. Analytical predictions of a simple Taylor approximation to I are in good agreement with numerical simulations of I and with data on I from SFP analyses of dispersal experiments on Drosophila fly populations. The theory presented here also provides a basis for the future inclusion of selection effects and extension to multiallelic loci.
© 2011 Blackwell Publishing Ltd.

Entities:  

Mesh:

Year:  2011        PMID: 21736655     DOI: 10.1111/j.1365-294X.2011.05171.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  7 in total

1.  Allelic richness following population founding events--a stochastic modeling framework incorporating gene flow and genetic drift.

Authors:  Gili Greenbaum; Alan R Templeton; Yair Zarmi; Shirli Bar-David
Journal:  PLoS One       Date:  2014-12-19       Impact factor: 3.240

2.  Expected Shannon Entropy and Shannon Differentiation between Subpopulations for Neutral Genes under the Finite Island Model.

Authors:  Anne Chao; Lou Jost; T C Hsieh; K H Ma; William B Sherwin; Lee Ann Rollins
Journal:  PLoS One       Date:  2015-06-11       Impact factor: 3.240

3.  Allele Frequency Difference AFD⁻An Intuitive Alternative to FST for Quantifying Genetic Population Differentiation.

Authors:  Daniel Berner
Journal:  Genes (Basel)       Date:  2019-04-18       Impact factor: 4.096

Review 4.  Entropy, or Information, Unifies Ecology and Evolution and Beyond.

Authors:  William Bruce Sherwin
Journal:  Entropy (Basel)       Date:  2018-09-21       Impact factor: 2.524

5.  Bray-Curtis (AFD) differentiation in molecular ecology: Forecasting, an adjustment ( A A), and comparative performance in selection detection.

Authors:  William B Sherwin
Journal:  Ecol Evol       Date:  2022-09-11       Impact factor: 3.167

6.  High genetic diversity is not essential for successful introduction.

Authors:  Lee A Rollins; Angela T Moles; Serena Lam; Robert Buitenwerf; Joanna M Buswell; Claire R Brandenburger; Habacuc Flores-Moreno; Knud B Nielsen; Ellen Couchman; Gordon S Brown; Fiona J Thomson; Frank Hemmings; Richard Frankham; William B Sherwin
Journal:  Ecol Evol       Date:  2013-10-16       Impact factor: 2.912

7.  Simulated Disperser Analysis: determining the number of loci required to genetically identify dispersers.

Authors:  Adam P A Cardilini; Craig D H Sherman; William B Sherwin; Lee A Rollins
Journal:  PeerJ       Date:  2018-03-29       Impact factor: 2.984

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.