Literature DB >> 21736313

A transient kinetic analysis of PRMT1 catalysis.

You Feng1, Nan Xie, Miyeong Jin, Mary R Stahley, James T Stivers, Yujun George Zheng.   

Abstract

Post-translational modifications (PTMs) are important strategies used by eukaryotic organisms to modulate their phenotypes. One of the well-studied PTMs, arginine methylation, is catalyzed by protein arginine methyltransferases (PRMTs) with SAM as the methyl donor. The functions of PRMTs have been broadly studied in different biological processes and diseased states, but the molecular basis for arginine methylation is not well-defined. In this study, we report the transient-state kinetic analysis of PRMT1 catalysis. The fast association and dissociation rates suggest that PRMT1 catalysis of histone H4 methylation follows a rapid equilibrium sequential kinetic mechanism. The data give direct evidence that the chemistry of methyl transfer is the major rate-limiting step and that binding of the cofactor SAM or SAH affects the association and dissociation of H4 with PRMT1. Importantly, from the stopped-flow fluorescence measurements, we have identified a critical kinetic step suggesting a precatalytic conformational transition induced by substrate binding. These results provide new insights into the mechanism of arginine methylation and the rational design of PRMT inhibitors.

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Year:  2011        PMID: 21736313      PMCID: PMC3153576          DOI: 10.1021/bi200456u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  37 in total

1.  Methylation of Sm proteins by a complex containing PRMT5 and the putative U snRNP assembly factor pICln.

Authors:  G Meister; C Eggert; D Bühler; H Brahms; C Kambach; U Fischer
Journal:  Curr Biol       Date:  2001-12-11       Impact factor: 10.834

2.  Analysis of the yeast arginine methyltransferase Hmt1p/Rmt1p and its in vivo function. Cofactor binding and substrate interactions.

Authors:  A E McBride; V H Weiss; H K Kim; J M Hogle; P A Silver
Journal:  J Biol Chem       Date:  2000-02-04       Impact factor: 5.157

3.  Structure of the predominant protein arginine methyltransferase PRMT1 and analysis of its binding to substrate peptides.

Authors:  Xing Zhang; Xiaodong Cheng
Journal:  Structure       Date:  2003-05       Impact factor: 5.006

4.  Inhibitory study of protein arginine methyltransferase 1 using a fluorescent approach.

Authors:  You Feng; Nan Xie; Jiang Wu; Chao Yang; Yujun George Zheng
Journal:  Biochem Biophys Res Commun       Date:  2008-12-31       Impact factor: 3.575

5.  The methylosome, a 20S complex containing JBP1 and pICln, produces dimethylarginine-modified Sm proteins.

Authors:  W J Friesen; S Paushkin; A Wyce; S Massenet; G S Pesiridis; G Van Duyne; J Rappsilber; M Mann; G Dreyfuss
Journal:  Mol Cell Biol       Date:  2001-12       Impact factor: 4.272

6.  Arginine methylation inhibits the binding of proline-rich ligands to Src homology 3, but not WW, domains.

Authors:  M T Bedford; A Frankel; M B Yaffe; S Clarke; P Leder; S Richard
Journal:  J Biol Chem       Date:  2000-05-26       Impact factor: 5.157

7.  Protein-arginine methyltransferase I, the predominant protein-arginine methyltransferase in cells, interacts with and is regulated by interleukin enhancer-binding factor 3.

Authors:  J Tang; P N Kao; H R Herschman
Journal:  J Biol Chem       Date:  2000-06-30       Impact factor: 5.157

8.  Hormone-dependent, CARM1-directed, arginine-specific methylation of histone H3 on a steroid-regulated promoter.

Authors:  H Ma; C T Baumann; H Li; B D Strahl; R Rice; M A Jelinek; D W Aswad; C D Allis; G L Hager; M R Stallcup
Journal:  Curr Biol       Date:  2001-12-11       Impact factor: 10.834

9.  Discovery and mechanistic study of a class of protein arginine methylation inhibitors.

Authors:  You Feng; Mingyong Li; Binghe Wang; Yujun George Zheng
Journal:  J Med Chem       Date:  2010-08-26       Impact factor: 7.446

10.  Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression.

Authors:  Xiaojiang Xu; Stephen Hoang; Marty W Mayo; Stefan Bekiranov
Journal:  BMC Bioinformatics       Date:  2010-07-23       Impact factor: 3.169

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  18 in total

Review 1.  PRMT7 as a unique member of the protein arginine methyltransferase family: A review.

Authors:  Kanishk Jain; Steven G Clarke
Journal:  Arch Biochem Biophys       Date:  2019-02-22       Impact factor: 4.013

2.  Probing the Plasticity in the Active Site of Protein N-terminal Methyltransferase 1 Using Bisubstrate Analogues.

Authors:  Dongxing Chen; Cheng Dong; Guangping Dong; Karthik Srinivasan; Jinrong Min; Nicholas Noinaj; Rong Huang
Journal:  J Med Chem       Date:  2020-07-16       Impact factor: 7.446

3.  Epigenetic control via allosteric regulation of mammalian protein arginine methyltransferases.

Authors:  Kanishk Jain; Cyrus Y Jin; Steven G Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-05       Impact factor: 11.205

4.  Novel Propargyl-Linked Bisubstrate Analogues as Tight-Binding Inhibitors for Nicotinamide N-Methyltransferase.

Authors:  Dongxing Chen; Linjie Li; Krystal Diaz; Iredia D Iyamu; Ravi Yadav; Nicholas Noinaj; Rong Huang
Journal:  J Med Chem       Date:  2019-12-03       Impact factor: 7.446

5.  Substrate specificity of human protein arginine methyltransferase 7 (PRMT7): the importance of acidic residues in the double E loop.

Authors:  You Feng; Andrea Hadjikyriacou; Steven G Clarke
Journal:  J Biol Chem       Date:  2014-10-07       Impact factor: 5.157

6.  Transient Kinetics Define a Complete Kinetic Model for Protein Arginine Methyltransferase 1.

Authors:  Hao Hu; Cheng Luo; Y George Zheng
Journal:  J Biol Chem       Date:  2016-11-10       Impact factor: 5.157

Review 7.  Analytical methods for kinetic studies of biological interactions: A review.

Authors:  Xiwei Zheng; Cong Bi; Zhao Li; Maria Podariu; David S Hage
Journal:  J Pharm Biomed Anal       Date:  2015-01-27       Impact factor: 3.935

Review 8.  Current chemical biology approaches to interrogate protein methyltransferases.

Authors:  Minkui Luo
Journal:  ACS Chem Biol       Date:  2012-02-01       Impact factor: 5.100

9.  Redox Control of Protein Arginine Methyltransferase 1 (PRMT1) Activity.

Authors:  Yalemi Morales; Damon V Nitzel; Owen M Price; Shanying Gui; Jun Li; Jun Qu; Joan M Hevel
Journal:  J Biol Chem       Date:  2015-04-24       Impact factor: 5.157

Review 10.  Protein and nucleic acid methylating enzymes: mechanisms and regulation.

Authors:  Daniel D Le; Danica Galonić Fujimori
Journal:  Curr Opin Chem Biol       Date:  2012-10-19       Impact factor: 8.822

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