Literature DB >> 21735253

'Lassoing' a phylogenetic tree I: basic properties, shellings, and covers.

Andreas W M Dress1, Katharina T Huber, Mike Steel.   

Abstract

A classical result, fundamental to evolutionary biology, states that an edge-weighted tree T with leaf set X, positive edge weights, and no vertices of degree 2 can be uniquely reconstructed from the leaf-to-leaf distances between any two elements of X. In biology, X corresponds to a set of taxa (e.g. extant species), the tree T describes their phylogenetic relationships, the edges correspond to earlier species evolving for a time until splitting in two or more species by some speciation/bifurcation event, and their length corresponds to the genetic change accumulating over that time in such a species. In this paper, we investigate which subsets of [Formula: see text] suffice to determine ('lasso') the tree T from the leaf-to-leaf distances induced by that tree. The question is particularly topical since reliable estimates of genetic distance-even (if not in particular) by modern mass-sequencing methods-are, in general, available only for certain combinations of taxa.

Mesh:

Year:  2011        PMID: 21735253     DOI: 10.1007/s00285-011-0450-4

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  3 in total

1.  Phylogenomics of eukaryotes: impact of missing data on large alignments.

Authors:  Hervé Philippe; Elizabeth A Snell; Eric Bapteste; Philippe Lopez; Peter W H Holland; Didier Casane
Journal:  Mol Biol Evol       Date:  2004-06-02       Impact factor: 16.240

2.  Constructing rooted supertrees using distances.

Authors:  Stephen J Willson
Journal:  Bull Math Biol       Date:  2004-11       Impact factor: 1.758

3.  Encoding phylogenetic trees in terms of weighted quartets.

Authors:  Stefan Grünewald; Katharina T Huber; Vincent Moulton; Charles Semple
Journal:  J Math Biol       Date:  2007-09-21       Impact factor: 2.259

  3 in total
  2 in total

1.  Minimum triplet covers of binary phylogenetic X-trees.

Authors:  K T Huber; V Moulton; M Steel
Journal:  J Math Biol       Date:  2017-06-12       Impact factor: 2.259

2.  Some limitations of public sequence data for phylogenetic inference (in plants).

Authors:  Cody E Hinchliff; Stephen Andrew Smith
Journal:  PLoS One       Date:  2014-07-07       Impact factor: 3.240

  2 in total

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