Literature DB >> 21734376

Epigenetics: principles and practice.

James P Hamilton1.   

Abstract

Epigenetics is defined as heritable changes in gene expression that are, unlike mutations, not attributable to alterations in the sequence of DNA. The predominant epigenetic mechanisms are DNA methylation, modifications to chromatin, loss of imprinting and non-coding RNA. Epigenetic regulation of gene expression appears to have long-term effects and wide-ranging effects on health. Diet and environmental exposures may potentially alter the level and scope of epigenetic regulation, thus interesting developments in the study of epigenetics might explain correlations that researchers have found between lifestyle and risk of disease. Aberrant epigenetic patterns have been linked to a number of digestive diseases including Barrett's esophagus, cirrhosis, inflammatory bowel disease, and numerous gastrointestinal malignancies. In fact, many exciting discoveries about epigenetics in general have been made by studying diseases of the gastrointestinal tract and hepatobiliary tree. Epigenetic modifications of DNA in cancer and precancerous lesions offer hope and the promise of novel biomarkers for early cancer detection, prediction, prognosis, and response to treatment. Furthermore, reversal of epigenetic changes represents a potential target of novel therapeutic strategies and medication design. In the future, it is anticipated that innovative diagnostic tests, treatment regimens, and even lifestyle modifications will be based on epigenetic mechanisms and be incorporated into the practice of medicine.
Copyright © 2011 S. Karger AG, Basel.

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Year:  2011        PMID: 21734376      PMCID: PMC3134032          DOI: 10.1159/000323874

Source DB:  PubMed          Journal:  Dig Dis        ISSN: 0257-2753            Impact factor:   2.404


  23 in total

1.  De novo quantitative bisulfite sequencing using the pyrosequencing technology.

Authors:  Jean-Michel Dupont; Jörg Tost; Hélène Jammes; Ivo Glynne Gut
Journal:  Anal Biochem       Date:  2004-10-01       Impact factor: 3.365

Review 2.  Epigenetics and gene expression.

Authors:  E R Gibney; C M Nolan
Journal:  Heredity (Edinb)       Date:  2010-05-12       Impact factor: 3.821

Review 3.  Epigenetics in cancer.

Authors:  Manel Esteller
Journal:  N Engl J Med       Date:  2008-03-13       Impact factor: 91.245

4.  Identification of differentially methylated sequences in colorectal cancer by methylated CpG island amplification.

Authors:  M Toyota; C Ho; N Ahuja; K W Jair; Q Li; M Ohe-Toyota; S B Baylin; J P Issa
Journal:  Cancer Res       Date:  1999-05-15       Impact factor: 12.701

5.  Identification of microRNAs associated with ileal and colonic Crohn's disease.

Authors:  Feng Wu; Simin Zhang; Themistocles Dassopoulos; Mary L Harris; Theodore M Bayless; Stephen J Meltzer; Steven R Brant; John H Kwon
Journal:  Inflamm Bowel Dis       Date:  2010-10       Impact factor: 5.325

6.  Epigenetic mechanisms involved in the pathogenesis of hepatobiliary malignancies.

Authors:  James P Hamilton
Journal:  Epigenomics       Date:  2010-04-01       Impact factor: 4.778

7.  Mechanistic and prognostic significance of aberrant methylation in the molecular pathogenesis of human hepatocellular carcinoma.

Authors:  Diego F Calvisi; Sara Ladu; Alexis Gorden; Miriam Farina; Ju-Seog Lee; Elizabeth A Conner; Insa Schroeder; Valentina M Factor; Snorri S Thorgeirsson
Journal:  J Clin Invest       Date:  2007-09       Impact factor: 14.808

8.  MicroRNA-21 is overexpressed in human cholangiocarcinoma and regulates programmed cell death 4 and tissue inhibitor of metalloproteinase 3.

Authors:  Florin M Selaru; Alexandru V Olaru; Takatsugu Kan; Stefan David; Yulan Cheng; Yuriko Mori; Jian Yang; Bogdan Paun; Zhe Jin; Rachana Agarwal; James P Hamilton; John Abraham; Christos Georgiades; Hector Alvarez; Perumal Vivekanandan; Wayne Yu; Anirban Maitra; Michael Torbenson; Paul J Thuluvath; Gregory J Gores; Nicholas F LaRusso; Ralph Hruban; Stephen J Meltzer
Journal:  Hepatology       Date:  2009-05       Impact factor: 17.425

9.  A multicenter, double-blinded validation study of methylation biomarkers for progression prediction in Barrett's esophagus.

Authors:  Zhe Jin; Yulan Cheng; Wen Gu; Yingye Zheng; Fumiaki Sato; Yuriko Mori; Alexandru V Olaru; Bogdan C Paun; Jian Yang; Takatsugu Kan; Tetsuo Ito; James P Hamilton; Florin M Selaru; Rachana Agarwal; Stefan David; John M Abraham; Herbert C Wolfsen; Michael B Wallace; Nicholas J Shaheen; Kay Washington; Jean Wang; Marcia Irene Canto; Achyut Bhattacharyya; Mark A Nelson; Paul D Wagner; Yvonne Romero; Kenneth K Wang; Ziding Feng; Richard E Sampliner; Stephen J Meltzer
Journal:  Cancer Res       Date:  2009-05-12       Impact factor: 12.701

10.  Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands.

Authors:  J G Herman; J R Graff; S Myöhänen; B D Nelkin; S B Baylin
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

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  33 in total

1.  Microarray expression profiling identifies genes with altered expression in Adolescent Idiopathic Scoliosis.

Authors:  Khaled Fendri; Shunmoogum A Patten; Gabriel N Kaufman; Charlotte Zaouter; Stefan Parent; Guy Grimard; Patrick Edery; Florina Moldovan
Journal:  Eur Spine J       Date:  2013-03-07       Impact factor: 3.134

Review 2.  DNA methylation: the future of crime scene investigation?

Authors:  Branka Gršković; Dario Zrnec; Sanja Vicković; Maja Popović; Gordan Mršić
Journal:  Mol Biol Rep       Date:  2013-05-07       Impact factor: 2.316

3.  Epigenetics: an expanding new piece of the stroke puzzle.

Authors:  William J Pearce
Journal:  Transl Stroke Res       Date:  2011-09       Impact factor: 6.829

4.  Inhibition of histone deacetylases sensitizes glioblastoma cells to lomustine.

Authors:  Mikkel Staberg; Signe Regner Michaelsen; Rikke Darling Rasmussen; Mette Villingshøj; Hans Skovgaard Poulsen; Petra Hamerlik
Journal:  Cell Oncol (Dordr)       Date:  2016-10-20       Impact factor: 6.730

5.  Genome-wide DNA methylation identifies trophoblast invasion-related genes: Claudin-4 and Fucosyltransferase IV control mobility via altering matrix metalloproteinase activity.

Authors:  Yuxiang Hu; John D Blair; Ryan K C Yuen; Wendy P Robinson; Peter von Dadelszen
Journal:  Mol Hum Reprod       Date:  2015-02-19       Impact factor: 4.025

6.  Potential Role of Epigenetics and Redox Signaling in the Gut-Brain Communication and the Case of Autism Spectrum Disorder.

Authors:  Ceymi Doenyas
Journal:  Cell Mol Neurobiol       Date:  2021-11-13       Impact factor: 5.046

7.  Genetic risk for earlier menarche also influences peripubertal body mass index.

Authors:  William Johnson; Audrey C Choh; Joanne E Curran; Stefan A Czerwinski; Claire Bellis; Thomas D Dyer; John Blangero; Bradford Towne; Ellen W Demerath
Journal:  Am J Phys Anthropol       Date:  2013-01       Impact factor: 2.868

Review 8.  Genomics and successful aging: grounds for renewed optimism?

Authors:  L C Pilling; L W Harries; J Powell; D J Llewellyn; L Ferrucci; D Melzer
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2012-03-27       Impact factor: 6.053

9.  Integration of genetic and epigenetic markers for risk stratification: opportunities and challenges.

Authors:  Nora Pashayan; Daniel Reisel; Martin Widschwendter
Journal:  Per Med       Date:  2016-03-01       Impact factor: 2.512

10.  Epigenome-wide association meta-analysis of DNA methylation with coffee and tea consumption.

Authors:  Irma Karabegović; Eliana Portilla-Fernandez; Yang Li; Jiantao Ma; Silvana C E Maas; Daokun Sun; Emily A Hu; Brigitte Kühnel; Yan Zhang; Srikant Ambatipudi; Giovanni Fiorito; Jian Huang; Juan E Castillo-Fernandez; Kerri L Wiggins; Niek de Klein; Sara Grioni; Brenton R Swenson; Silvia Polidoro; Jorien L Treur; Cyrille Cuenin; Pei-Chien Tsai; Ricardo Costeira; Veronique Chajes; Kim Braun; Niek Verweij; Anja Kretschmer; Lude Franke; Joyce B J van Meurs; André G Uitterlinden; Robert J de Knegt; M Arfan Ikram; Abbas Dehghan; Annette Peters; Ben Schöttker; Sina A Gharib; Nona Sotoodehnia; Jordana T Bell; Paul Elliott; Paolo Vineis; Caroline Relton; Zdenko Herceg; Hermann Brenner; Melanie Waldenberger; Casey M Rebholz; Trudy Voortman; Qiuwei Pan; Myriam Fornage; Daniel Levy; Manfred Kayser; Mohsen Ghanbari
Journal:  Nat Commun       Date:  2021-05-14       Impact factor: 14.919

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