Literature DB >> 21732189

Endogenous tagging of the murine transcription factor Sox5 with hemaglutinin for functional studies.

Wenqing Jean Lee1, Petra Kraus, Thomas Lufkin.   

Abstract

Gene expression is usually studied at the transcript level rather than at the protein level due to the lack of a specific and sensitive antibody. A way to overcome this is to fuse to the protein of interest an immunoreactive tag that has well-characterized antibodies. This epitope tagging approach is often used for in vitro experiments but for in vivo studies, the success rate of protein tagging has not been extensively analyzed and our study seeks to cover the void. A small epitope, hemaglutinin derived from the influenza virus was used to tag a transcription factor, Sox5 at the N-terminal via homologous recombination in the mouse. Sox5 is part of the Sry-related high-mobility-group box gene family and plays multiple roles in essential biological processes. Understanding of its molecular function in relation to its biological roles remains incomplete. In our study, we show that the longer isoform of Sox5 can be tagged endogenously with hemaglutinin without affecting its biological function in vivo. The tagged protein is easily and specifically detected with an anti-hemaglutinin antibody using immunohistochemistry with its expression matching the endogenous expression of Sox5. Immunoprecipitation of Sox5 was also carried out successfully using an anti-hemaglutinin antibody. The transgenic line generated from this study is predicted to be useful for future experiments such as co-immunoprecipitation and chromatin immunoprecipitation, allowing the further understanding of Sox5. Lastly, this approach can be easily employed for the investigation of other transcription factors and proteins in vivo to overcome technical limitations such as antibody cross-reactivity and to perform isoform-specific studies.

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Year:  2011        PMID: 21732189     DOI: 10.1007/s11248-011-9531-9

Source DB:  PubMed          Journal:  Transgenic Res        ISSN: 0962-8819            Impact factor:   2.788


  30 in total

1.  Epitope tagging of endogenous proteins for genome-wide ChIP-chip studies.

Authors:  Xiaodong Zhang; Chunguang Guo; Yueting Chen; Hennady P Shulha; Michael P Schnetz; Thomas LaFramboise; Cynthia F Bartels; Sanford Markowitz; Zhiping Weng; Peter C Scacheri; Zhenghe Wang
Journal:  Nat Methods       Date:  2008-01-06       Impact factor: 28.547

2.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

3.  Generation of mice with a novel conditional null allele of the Sox9 gene.

Authors:  Sook Peng Yap; Xing Xing; Petra Kraus; V Sivakamasundari; Hsiao Yun Chan; Thomas Lufkin
Journal:  Biotechnol Lett       Date:  2011-04-12       Impact factor: 2.461

4.  Immunogenic structure of the influenza virus hemagglutinin.

Authors:  N Green; H Alexander; A Olson; S Alexander; T M Shinnick; J G Sutcliffe; R A Lerner
Journal:  Cell       Date:  1982-03       Impact factor: 41.582

5.  Transcriptional regulation of an axonemal central apparatus gene, sperm-associated antigen 6, by a SRY-related high mobility group transcription factor, S-SOX5.

Authors:  Elizabeth Anne Kiselak; Xuening Shen; Jingmei Song; David Roberto Gude; Jiannan Wang; Steven L Brody; Jerome F Strauss; Zhibing Zhang
Journal:  J Biol Chem       Date:  2010-07-28       Impact factor: 5.157

6.  Purification of a RAS-responsive adenylyl cyclase complex from Saccharomyces cerevisiae by use of an epitope addition method.

Authors:  J Field; J Nikawa; D Broek; B MacDonald; L Rodgers; I A Wilson; R A Lerner; M Wigler
Journal:  Mol Cell Biol       Date:  1988-05       Impact factor: 4.272

7.  L-Sox5 and Sox6 drive expression of the aggrecan gene in cartilage by securing binding of Sox9 to a far-upstream enhancer.

Authors:  Yu Han; Véronique Lefebvre
Journal:  Mol Cell Biol       Date:  2008-06-16       Impact factor: 4.272

Review 8.  Functional proteomics: protein-protein interactions in vivo.

Authors:  Maria Monti; Marianna Cozzolino; Flora Cozzolino; Roberta Tedesco; Piero Pucci
Journal:  Ital J Biochem       Date:  2007-12

9.  SoxD proteins influence multiple stages of oligodendrocyte development and modulate SoxE protein function.

Authors:  C Claus Stolt; Anita Schlierf; Petra Lommes; Simone Hillgärtner; Torsten Werner; Thomas Kosian; Elisabeth Sock; Nicoletta Kessaris; William D Richardson; Veronique Lefebvre; Michael Wegner
Journal:  Dev Cell       Date:  2006-11       Impact factor: 12.270

10.  TFCat: the curated catalog of mouse and human transcription factors.

Authors:  Debra L Fulton; Saravanan Sundararajan; Gwenael Badis; Timothy R Hughes; Wyeth W Wasserman; Jared C Roach; Rob Sladek
Journal:  Genome Biol       Date:  2009-03-12       Impact factor: 13.583

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  3 in total

1.  CRISPR-Cas9-Mediated Epitope Tagging Provides Accurate and Versatile Assessment of Myocardin-Brief Report.

Authors:  Qing Lyu; Vidhi Dhagia; Yu Han; Bing Guo; Mary E Wines-Samuelson; Christine K Christie; Qiangzong Yin; Orazio J Slivano; Paul Herring; Xiaochun Long; Sachin A Gupte; Joseph M Miano
Journal:  Arterioscler Thromb Vasc Biol       Date:  2018-09       Impact factor: 8.311

2.  An Integrative Developmental Genomics and Systems Biology Approach to Identify an In Vivo Sox Trio-Mediated Gene Regulatory Network in Murine Embryos.

Authors:  Wenqing Jean Lee; Sumantra Chatterjee; Sook Peng Yap; Siew Lan Lim; Xing Xing; Petra Kraus; Wenjie Sun; Xiaoming Hu; V Sivakamasundari; Hsiao Yun Chan; Prasanna R Kolatkar; Shyam Prabhakar; Thomas Lufkin
Journal:  Biomed Res Int       Date:  2017-05-28       Impact factor: 3.411

3.  In vivo genome-wide analysis of multiple tissues identifies gene regulatory networks, novel functions and downstream regulatory genes for Bapx1 and its co-regulation with Sox9 in the mammalian vertebral column.

Authors:  Sumantra Chatterjee; V Sivakamasundari; Sook Peng Yap; Petra Kraus; Vibhor Kumar; Xing Xing; Siew Lan Lim; Joel Sng; Shyam Prabhakar; Thomas Lufkin
Journal:  BMC Genomics       Date:  2014-12-05       Impact factor: 3.969

  3 in total

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